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Homology
BLAST of mRNA_P-littoralis_Contig1.96.1 vs. uniprot
Match: D8LDH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH1_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 6.250e-10 Identity = 25/36 (69.44%), Postives = 33/36 (91.67%), Query Frame = 2
Query: 503 MKQMVIKDKEDVKLKTWSTRIRDAAWNFWAGGPPVG 610
MKQMV+K++++VKL TW +RIR+AAW FWAGGPP+G
Sbjct: 1 MKQMVVKNRDEVKLTTWKSRIRNAAWQFWAGGPPLG 36
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2444 |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-15_000640.1 |
| Cds size | 276 |
Relationships
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789312.6810167-UTR-P-littoralis_Contig1:589656..591487 | 1680789312.6810167-UTR-P-littoralis_Contig1:589656..591487 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1 589657..591487 - |
| 1680789312.7212822-UTR-P-littoralis_Contig1:597786..597878 | 1680789312.7212822-UTR-P-littoralis_Contig1:597786..597878 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1 597787..597878 - |
| 1680789312.7289827-UTR-P-littoralis_Contig1:598210..598455 | 1680789312.7289827-UTR-P-littoralis_Contig1:598210..598455 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig1 598211..598455 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789312.6906307-CDS-P-littoralis_Contig1:591487..591553 | 1680789312.6906307-CDS-P-littoralis_Contig1:591487..591553 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1 591488..591553 - |
| 1680789312.7071621-CDS-P-littoralis_Contig1:597576..597786 | 1680789312.7071621-CDS-P-littoralis_Contig1:597576..597786 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1 597577..597786 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1.96.1 >prot_P-littoralis_Contig1.96.1 ID=prot_P-littoralis_Contig1.96.1|Name=mRNA_P-littoralis_Contig1.96.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=92bp
MPTRPSSTAAPTPSDSIRGDPTDNNASGGASAGGGAAAAGGLVIPEGKVA VWDNTMKQMVIKDKEDVKLKTWSTRIRDAAWNFWAGGPPVG* back to topmRNA from alignment at P-littoralis_Contig1:589657..598455- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig1.96.1 ID=mRNA_P-littoralis_Contig1.96.1|Name=mRNA_P-littoralis_Contig1.96.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8799bp|location=Sequence derived from alignment at P-littoralis_Contig1:589657..598455- (Pylaiella littoralis U1_48) AACAAACTGAGAAGGAGACTCTGTACTGTTGTGTAGCAGCAGCAGTGGGC
GTGCAGAGGCAATGCACAGGCAGGCAGGAAGCAGACCTGAAGAGACGAAT
ACTGTACTCGGGGAGATACCCGCCGACTTCATCTGTACTTCTCCGCGAAG
CCCCTTAGTACCGCTGTTGGACCGCAGATCCATCAGATCAACGCACCATT
GTGCACGGCGAACATCACTTCACGAGCTTTCTATGATACGACGAGGTGAG
CGAGTGCACAAGTTTTCCCTGCACCCCCCCTAACGACAACCTCTCCTTTA
CAACATGTATGTATCCAGTTGTACAGTGCAATCAGAAGTCGCTACCGGTA
TTCGAATTTTGAGTGTTGACCCTGATCATGACAGCGACTCTCCTGGAGCA
CCGACCTTCTAACTCGAGGCCTCTGGGCTGGTCGTCTTCAGTTCGCCGCA
AAGCAGCTTTCGTCCAAGCACTGCGCCCGGTATTCTCCCTTTCTCTTGAC
CCTTCAGCAGAGGCTCATTACTTCAAGCACCGCACGCACCTCCTCCTCCG
CCCCCTGTACTTCCATCCAACCAGCAGACAGAGCGTGCAAAGGTCGAAAG
TGACGACTCTATTGAGCCAAGTGAAGGGAAACACCCGCTGGACGCTGGAC
GAAAGACACGCTCATCACCATGCCAACGAGACCCTCCAGTACTGCTGCGC
CGACACCATCGGATTCGATAAGAGGCGATCCGACAGACAATAATGCTAGT
GGCGGTGCTTCGGCTGGTGGCGGTGCTGCTGCGGCTGGTGGTCTGGTAAT
TCCGGAGGGCAAGGTGGCCGTGTGGGACAATACCATGAAGCAGATGGTGA
TAAAAGACAAGGAGGACGTGAAGCTCAAGGTATTGCATGTGATATTGCCG
TTATTTACAGCAGTACTGCCACCCAAAGAGTGATTGATGCACGCAGACAG
GAAAATGTTTTCTTGTTCTACAGAAGTATCTAGTCACAGACAACTTTTGG
TTCGCACTAAACAGCAGCAGTATCATAGGCTCGTGAAGCTTGCCAGCTTT
CCAGGTTCACCGGCGGTATTCAGTGGCATATCCCTGGTACGGGGCTGCAC
ACGATTGCCTCTACCCACGAAGTCTTCACGGAGGCAGCGGAGTCTCCATG
GAGTCTCCGTGGAGACTCCAGTGCCTCCATGGAGACGCCATCTTCTCCCT
TGAGACTCGATGGAGAAAATGGAGACTCGTTGGATAAAATGGAGTGTCCA
TGGAGGTGGAGCTCCATAACATCCATGGAGGACGTGGAGTCTCTATGGCC
TCCATAGAGTCTCCATGTATCCTTCGTAGATTCTCCATGGATTCTCCGTG
GATTCTCTGTGGATTCTCCATGGGTAATCCATGGAGTCCCCTCATCAATA
CTGGGGGTAAGCTAAGCTTGGGGTTGTGTGGAGTAAAGAGCAATCCGGCC
AACACGGCCTGGGATGAAAAGCTTGTATTATCAACCTCCTTCGGGGGAGG
GCACCTGGCAAAAAGAAAAGGAGAGAGTCGCAAACGCGGCGCAATCACAT
CACGCAATCACACGAATCGAATATCCGAGACGACAAGATCCACAAAGGAA
AATACACCGAAATTCCGTGATACCCAGAAACCAACGGAACGCAGTCTCCG
TAGATCTGTATCCAATATCCATCCATCATGCTATGCTACGGGTATATCCA
ACAGCCCCCCTGCTCGTATGCATCGACGTGATACGGCAAGAATAATTCCC
ACAAAATACTCTCTTTACTAATACTTTCAATCGAAACCAACCAAGACAAA
ATGTATGCCCGAAATCCCGAAGTATCCAAAGAAATCCAACACACCAAAAA
TATCTATCCTTAACACATGTTCATTCTTCCTGCCTTCTCTTCTTCCTTTT
TCATCAACCAGAAAATAAAAAAAAATCAAACAAAACAACACAGACACAAC
TCGAAACAGAGCCAACCGCAGAGACAAAAATGCATTCTTCACTGCAAATT
CATCACAATATCACGGTGCAGTTCAAAAGACTCCCTGCTGATTGCTTTCA
TCAAGAAATCTGCATGCTGATATTCCGACGTCACGTGTGTGATCGAAATC
TCCTTCCTCTCTACCAGTTCCCTGATAAAGTGATGCCGTACGTCTATGTG
CTTCGAGTTCGAGTTGGTGATTGGATTGTGGGCGATCTGAATCGCACCCT
GATTGTCCTCGAACACTGGGATGCAAGGCATGCCCGCTGTTGGCAACATA
AAACGCCAAACCTGCCTTAAAAACAACACTTCCTTCAAGACATCTGCAAT
TGCCACGTACTCCGCCTCCGTTGTCGAAAGCGTCTGCACTTTTACGTCCT
AGAAAACCAAGTCACACATCCACCACCACACATCACAAGGCCTCCCGACA
CCGACCTCCAGTCTGCCGCCTTGCTCGCATAGTCGGCATCCGCAAACACT
TGCATGCTCATGCCACTCACTACCCCCCTCTGCAATGTAATACCCGTCCA
ACTCGTCCTGCGGACGTACCCTAAGATACCAAGTGCTGCCTTCCATACCT
TGCGGAGAGGGACTCGGGGGGGCACCATGGCCGTAGGCCACGGCACCGTC
AGCACAACTAGGGGGCAAGCGAGTAGCCAAAAGCGAACATCCAACGTCAG
AGTGTGCAAAGCACAGCTGCCCATCAAACAAGTGAACGCCCCTGTAGTCT
AGCAAAATTCCCTGCTTGCGTTGAGCGTGGTGCAGAGAAAACAAATTGAA
GTTAATGCCTGGCACAAGGTATACATCCGACATTTGTACACGGAAATCTA
TCTCTCCAGTCGAAGTCTGCATGTGGAACACGAGGTTGATGGTGCCAACA
CACTGTACTCGCATAAATGCTCCGTTGCCAACCTGCACAAACTCTTTACC
AGGGGGAACACGTTTGATGTTGAACATGTGGGTATCATCGCCGATAAAAC
TGTTGCTTGCACCACTATCAGCCCAAAATCGCTCTCTACCGCTTCCAACA
CTATGGCTTTGAGCCGAGAAAGCAAAATCACCACCCCCAAGACCATGCGA
AACCGAACTAAACTCGCCTGGGGACACAAAGCGTGCCATGAGGAAGTGGA
GCCCCCCCAGGGAAGATGAAGACGCATTGGGAGAAGGGGAATGGGTTGGG
GCAAAGGTCGAGAGCTGCTGTGACTGCTGCTGTGGCTGCTGCTGCTGAGG
GTGGAAGGTCGGCAGAGGAGGCGGCTGTGACTGCTGCTGTTCGTAGTGGT
ACTGCTGCGGCGGTAGCTGCTCCTCCGGTTCCAGATGATACTCCTGGTAG
CACTGTGGCTCATGCGCCTCCTACTGCTGCTGGTATGAGTCCCAAGTGTT
GGTGCTGCTGTCGCCGCCGTCGCAGCATTCACTGCTGTAGTCGACGGTGC
TGGCTCCAGATGACGTGGTGGGCTGTGCCATAAAGGCGGTGCCATACGAG
TGCACGATGTTCGCGCGCCCGTGCGGAGGCCTCCACTGCTGTTGCTGGGT
CGGAGTCTGGCGGGGGGGGGGGCGGAATTACCCCGCCCCATGTTGCCCCT
CCCGCCATCACTCCAAGGCGGCGGCCTACTGTTTTCACGACCACCAGGTC
CTCGTTCATGGGTTGGTGCTGCTGTCCTCCGCGGCCGCCGTGTGATCCAT
GCTGAGACATACTGTCCCAGCCGCCTCTACCACGGCCACCGTGATGCTGT
TGTTGCTGCTGCTGTCCGCTCCATCCGTCGGGGCGTTGGCTGCTGTAGTG
GGGTTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCGAAAAACCAC
CCCAGCCACGACCTCCACGGTTGTCCTGCTGCTGCTGTCCATACTGTTGC
TGTGGGCGCCCGTGCCGATATACACACTGCCCGTTGGTGTGGTTCGACTG
CGGGTGAAGGTGGCAGAGCTTAAAGGTCGTGGTCTCCTTGGTGTTCGTTG
CTCCTGCTGTACCTGCCGTTCCGGCTCCGTCCGCGGCTCCCCCTCGACCC
ATTTTGGACACGTGCATCGCCCCGGCCCATGCCGGATGCGACGAAAGCGT
GCCCCGCCCCATTCTTCCGCTCCTTCTCCCGCTGGATCTCCAACTCCCCG
TGGGCGTCACGAACCACTTCCTCAACTCCCTGCATAGTTAAATCTTGAAG
GGCGAGAAGATACCCTTTTGTAGCTTATAGTCGGGGGAGAGATTGCGAAC
CAAGTGTAAGATTGCATCGTCGTCGGAAAACAAGACACCATGTGATGCAA
GCTTGCTACGGAGCACTGCAAATCTACCAAGGTACGACTGCGGGGTCTCG
TCATCTCCCATCCTTAAAAGTGTGGTACTCTTGGGAAAGTTTGGATTTCT
CTGCTGCTGCCTGAGGCTTGTAGTACCTACAGAAAATTTCCCAGCCCTTA
CTGGGGCCACCATCTGGCAGGATCTGTGTGAGTACGGGCATGTAGACTAT
GGTTGAGATCAGCATGTTCCACGCTCTGACTGCCCGCTCTACTGTCTCGC
TTGAATGCATTGCACGCAATTCGTCCAAATGTACGCCCTCTACTCCAACC
CTGATGTGAGTATCACCCAACACCACTTCCCATACACCCTCTTGGGTGAA
GCTAGCTATCATGCTCGACTGAAATACGTGAATTTCGTCCGCAAATTCTC
TCCGTGTTTGATTTCGCCTGTCCAAGGCGCAACTCTACTCGACTGTGTAA
CTCTAAGTGTCCCAGGGTGAGGCGCACTGCCTACATGATTCTGAGTACCG
ATGTTCAGGCCTGTCAGGGCCCTTGCGATGGTGTGGGCGATCTTGTCGGC
TGACGGGGTCGATGATTCACGCCTCTCTTCCTGCTGATGGCGTGTCTCGT
GCTCCCCGTGCCGGACATCTCCTCCCCCCACCTCGCTGTCATCTCTTCGC
TGACGGCGGTCTTCTGCTATTGCGTCGGCAACGCTTGCCGCTGCCCTCTT
GGTCACCTGTTCTTCGATCAGTCTCGCGTTCTCCGCGATTCGTCGGTGCT
CCTGCGCGTGTAGACTCTCAAAACCCATCTTGTCCCAGCTCTATCACCGC
AAAGTGATACTCCAGCTAAGCTAGACCCGCATATCGTAGACGACGTGTCT
TTCGCTAGCGTAATCGATACTGGGGGTAAGCTAAGCTTGGGGTTGTGTGG
AGTAAAGAGCAATCCGGCCAACACGGCCTGGGATGAAAAGCTTGTATTAT
CAACCTCCTTCGGGGGAGGGCACACGGCTACCAGAAAAGGAGAGAGTCGC
AAACGCGGCGCAATCACATCACGCAGTCACACGAATCGAATATCCGAGAC
GGCAAGATTCACAAAGGAAAATACCGAAATTCCGTGATACCCAGAAACCA
ACGGAACGCAGTCTCCGTAGATCTGTATCCAATATCCATCCATCATGCCA
TGCTACGAGGAAATCCAACATCCCCATGGAATCTCCATTGAGTCTCCATT
TTCCCCACGTCGAGGCCGGTATCTTGAAATGAGACTAAAGGGCAACAGAG
CTTCTTGTAAACTCCATGCATTCTCCATGGATTCTCCACACATCTTCCAT
GGATTCTCCACGCATTCTCCTTGGGTTCTCCACGAATATTCCTATGATTA
TCCACGGATACATGGATGTATTATAAAGAAAAGGACCCTATGGGAGCCAT
CACGGGCTTCTTTTTTTGTGTTAATTTGATACCCGTATGTCCTGAAATCC
CTCTTTTCAGGATATGGACGGGAGGGAATTAAATCCCTCTTTTCTGAATC
TTCGCTAAATGATAAGGCAATGGTGTTAAAAATCATCTTGCGTATGTTAC
GGAAATATCCTCGCCAGTGCTTAGTGGTCTTGGATCTCCTGTACGTTTGT
GATCAACGCTCAGCAGCACATCTGTTATGTGTGTGCTCCATCGAGAAGGA
CATGTAACTTACAAGTCGGTATATCTTCGTCGGTTAGCCTGCATCGTACC
ACGTATGCGGGAGAACACTACACCACTGTTTGTGTGGTAATGTCCTTCTC
GGTGTTCCGTTTTCGACCTCAATCGTTGTTATCTCCCTGGGTCGTTTGAG
TACCATAGGTATCACTGCTGTCGCATAGAAACTACCATCAAGGTGTCTGG
ATTACCACCCACTTGTCTGCTTTATCTGTCTGTGCTGGGCTCAATCTTGT
AGGCGTCTCGTACTTCGGCTGCCTGTTGACGTAAAAACAAATGGCCCGTC
TCTATCTCCTTTAGAGGAATGACGACAGTAGGGAATAATTCAAGTCAACA
GGAAGTTCAGGTTACACAATGATCCGTTTGGTGCAACTGCAAGTCGCAGG
AGCCTTCATATGCCACTATTAGGCCCAAGATATCTCGACACAACACCCAC
AAAACCCAGTGCAGCAGTTGCAACAAGTACCACCCAATGCTCTTTCGACG
GCGGGTGCTAAATGTCTCTCGCCATCTGATACATACACTTTACGATGTGT
TTGTTTCGGGGTAGAAACAAACCCGAAGGAATCTACCATGTGAAAGGAGA
GGGGGTGTAAAATGAATTCGTCATTCACATTATCCATTTCGCTCGACCCA
TGCACCACACCATGACCACAGCGTCGCAATTTTCACTGGTATTGCGCCGT
TACATGAAAAGCACTTCGCACCAACTGCAACTCCTAAGGGCGGTAGTCAT
CCGTCGAACCTTACCAAGGCTTGGGCGGAGGGTTATCGTCGCGTGAACCA
TGTACGGAATTTCAGTTTTACCACGCTTAAGCGCAACAACTGGTAACGCT
TTGTTTGTATTTTTTCTAGCTAATTTTTTCGGAGGTTGAGCATACCTTTT
GATCACCCGTCACTCTTGACACGCCCACGGCCGTAAGAAAAGGCTTTGTC
TCCCCTTGCGCCCCATGCGTATCCTTTGTCGGCATGTCTTGCCATTGCGC
AGACGTGGTCTACGCGGATCAGAGACGCCGCTTGGAACTTCTGGGCCGGA
GGCCCTCCCGTGGGATGAATGACCGAACGAAGAGCAGGCAACGGCGACGA
CAATTGTTCGGAATTCACCACCCGACGAGAAACTTCCTTGGCACGGGGGA
AGCAGAGCGTAGGAGCCGACTCGACGAGGCCGTGTGGGTGCTTGACCCCA
GATTGGACATGTATTTTCGATCGCCCCTCGCCACGGAGCAGACTATCATG
CTTGGGTGTTTTACACCGGATGGAACGCCTCATTTTCGTTGCACCAACTG
TGGGTGAGGGGTCACATGCTCAAGGTGATGGCCGCTTGACCCTATGTAGA
TCGGATACTTCTCTGTCGTTCCACTACCATAGGAGGGGGAGAGCTGTCAC
TGCTCTCTTTGTTGCTCGACCAGTACGTGTTGATATTTGTTCTCCTAGTG
GGGAGGGATTTACTCAGCCTTTGACAGGTGATCGTGGACACCAATCATGG
CCCGACATCTCGGTAGAGTGATCGTGGAGGTGGGGGGGGCGGATCCTCCT
GCTGCTCACAATCCTAACTTACGTGTACGATCTCACATCCAGACATTTGA
CAAAAAAGGACGCGGAGCCTCTTTCGGTGCGGTGCGAGGCCGTATTAAGC
TGTCGTTGCGATGAAGCGTTTATCACGCTCGTGGGGGTGTTGTCGGTATT
CATACAAAAACTACCTGCCAAAAGAACGGGTGCTATTTTCGCTAAAACGT
GGACGAACACTGTACCTCCGCTGCTGCATAGAGCGCTCAAAGGGTAGTTA
CGAAGGAGGGCGTTCCTCGGCTGTCCAGGCAATAAGTTCACTTTTCGTTT
TTCGAGCACGGATGGCCGTGGCTAGACCGACCGCGTATCTGTGTAGCAGG
AATTGCCAATGGCATGATGTTACTCTCTTCATGATATACTCACAGCTTGT
AGGTATGATATACCACAAACCTAGTTCGTTCCGTTTGATATGGGGAGGGT
CGTTTTCTCAGCAGTTTTTCGCACGGTGACATTTTTTCCGAAGCTAGCTT
CCTTCCTCCGGAGCTGTGCTATCATTCCTACGACGAAGACGATTTGCAGT
CCGTCTTGTGATTCCTGGATATTTCAAAGATGTAGGTGTGGGAATTGATT
GTTGAGCACCCACCGCGCGTATGGTAAACGACGATCGAGAAGGATGGGGT
GGGATGCTTACATTTCAAAGTTTTTGATGCGTTGGACTGGGCCGTATTGA
TATTTTCCCTTGTGTGACCTCGGCTGGTGCACCTGACCCATATATGCCGG
GAGCCGAGATGCGGTATTCGCACGACGGTGTGGTTTGGGTGATAGCGGTT
TCTTGGCATACACCGTTTGCTCCCCGTGAGGGAACCGATCTGTTTAAAGT
AGGCTACGGTGGGTAAGGCACTAGACTCGTCTTGCAGCAAGTTTATTAAG
ATTTGCGAAATTCGAATTTCGTGTGGAGCACCCCGTACCAATCATCAACT
TGTTTTTCGATCCAGCGCATGATGCCCCTCGCAAAGGGACCATTACCACA
CATGCGTGCGGACGTTTTCAGCCGTCTACTCTATCGCCGGGAGGAAGAAA
AGCGTGGACATCGGAGCTTTGCACTATGGTGGAATGTTTGTTGATGATCG
GACACGCTTTAGTGTAGTTGGTGGCTTCAAGGTGAGGACCCTCTTCGCTC
CGACGTTTGGGCGACACGCGTTCCACTCTCGTAGTAGTTTGATAATGCAT
GACTAGGAAACGGCACACAAACCTTAGGTGCGTTTCACCGCATCCCAAGA
AGGCACAGCTACTGGCAACGGAACGTGCATTTTTCAGCTACAACCGCGCT
GTTGATGGTAGTTTCTGGTGCTTAGCCCCAGCAAAACATTTACTGCGCC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig1:589657..598455- >mRNA_P-littoralis_Contig1.96.1 ID=mRNA_P-littoralis_Contig1.96.1|Name=mRNA_P-littoralis_Contig1.96.1|organism=Pylaiella littoralis U1_48|type=CDS|length=276bp|location=Sequence derived from alignment at P-littoralis_Contig1:589657..598455- (Pylaiella littoralis U1_48) ATGCCAACGAGACCCTCCAGTACTGCTGCGCCGACACCATCGGATTCGAT AAGAGGCGATCCGACAGACAATAATGCTAGTGGCGGTGCTTCGGCTGGTG GCGGTGCTGCTGCGGCTGGTGGTCTGGTAATTCCGGAGGGCAAGGTGGCC GTGTGGGACAATACCATGAAGCAGATGGTGATAAAAGACAAGGAGGACGT GAAGCTCAAGACGTGGTCTACGCGGATCAGAGACGCCGCTTGGAACTTCT GGGCCGGAGGCCCTCCCGTGGGATGA back to top
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