mRNA_P-littoralis_Contig1.422.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.422.1
Unique NamemRNA_P-littoralis_Contig1.422.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.422.1 vs. uniprot
Match: D8LBQ0_ECTSI (Peroxisomal enoyl-coenzyme A hydratase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBQ0_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 4.700e-19
Identity = 42/64 (65.62%), Postives = 56/64 (87.50%), Query Frame = 3 
Query:  189 MYDAFETLLISWPAPCVLHVQLNRPTKRNAMDAKFWVEFRECFKVIAEREDSDLRAIVVSGRGE 380
            MYD FETL +S+PA  VLHVQ+NRP+KRNAM+AKFW+E R+CF++I+E  D+D+RA+VVSG G+
Sbjct:    1 MYDGFETLFVSFPARYVLHVQINRPSKRNAMNAKFWIECRDCFQLISE--DADVRAVVVSGMGD 62
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BLAST of mRNA_P-littoralis_Contig1.422.1 vs. uniprot
Match: A0A4P9ZX98_9FUNG (ClpP/crotonase-like domain-containing protein n=1 Tax=Dimargaris cristalligena TaxID=215637 RepID=A0A4P9ZX98_9FUNG)

HSP 1 Score: 71.6 bits (174), Expect = 1.990e-11
Identity = 32/67 (47.76%), Postives = 48/67 (71.64%), Query Frame = 3 
Query:  183 STMYDAFETLLISWPAPCVLHVQLNRPTKRNAMDAKFWVEFRECFKVIAEREDSDLRAIVVSGRGES 383
            S +Y +FE L +++P+  VLHV LNRP +RNA++ + W E  +CF+ I  R DSD+RA+V+SG G +
Sbjct:    4 SNIYQSFECLRVTFPSDSVLHVTLNRPRQRNALNPRMWEEIGQCFQAI--RSDSDVRAVVLSGEGSA 68
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BLAST of mRNA_P-littoralis_Contig1.422.1 vs. uniprot
Match: UPI00077AEEBD (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077AEEBD)

HSP 1 Score: 69.3 bits (168), Expect = 3.200e-11
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:  183 STMYDAFETLLISWPAPCVLHVQLNRPTKRNAMDAKFWVEFRECFKVIAEREDSDLRAIVVSGRGE 380
            ST   +FETL +S P   V+HV+LNRP KRNAM+  FW E  ECFK IA+  DS+ RA+V++G G+
Sbjct:   47 STGSYSFETLAVSKPHEHVIHVELNRPEKRNAMNKAFWREMVECFKQIAD--DSNCRAVVLTGAGK 110
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BLAST of mRNA_P-littoralis_Contig1.422.1 vs. uniprot
Match: A0A6G1R1G6_9GRUI (Enoyl-CoA hydratase 1 (Fragment) n=1 Tax=Hypotaenidia okinawae TaxID=2861861 RepID=A0A6G1R1G6_9GRUI)

HSP 1 Score: 66.6 bits (161), Expect = 9.070e-11
Identity = 35/73 (47.95%), Postives = 50/73 (68.49%), Query Frame = 3 
Query:  162 PTTGGGGSTMYDAFETLLISWPAPCVLHVQLNRPTKRNAMDAKFWVEFRECFKVIAEREDSDLRAIVVSGRGE 380
            PT  G G+    A++TLL++   P VLHV+LNRP KRNA+++  W E RECF+ I +  D+  RA+V+SG G+
Sbjct:   40 PTPRGMGT---GAWQTLLVTPSGPHVLHVELNRPDKRNALNSTLWRELRECFRDITD--DASCRAVVLSGAGK 107
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BLAST of mRNA_P-littoralis_Contig1.422.1 vs. uniprot
Match: UPI0015612C80 (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=UPI0015612C80)

HSP 1 Score: 70.1 bits (170), Expect = 9.280e-11
Identity = 36/69 (52.17%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:  174 GGGSTMYDAFETLLISWPAPCVLHVQLNRPTKRNAMDAKFWVEFRECFKVIAEREDSDLRAIVVSGRGE 380
            G G++    +ETL +S P   V+HV+L+RP KRNAM+  FW E   CF  IAE  DSD RA+VVSG G+
Sbjct:   32 GSGASPSHTYETLRVSQPRESVIHVELHRPEKRNAMNQAFWREMVVCFDRIAE--DSDCRAVVVSGAGK 98
[Close]
BLAST of mRNA_P-littoralis_Contig1.422.1 vs. uniprot
Match: A0A8C4TL06_ERPCA (Enoyl-CoA hydratase 1 n=2 Tax=Polypteridae TaxID=8289 RepID=A0A8C4TL06_ERPCA)

HSP 1 Score: 69.3 bits (168), Expect = 1.690e-10
Identity = 35/60 (58.33%), Postives = 42/60 (70.00%), Query Frame = 3 
Query:  201 FETLLISWPAPCVLHVQLNRPTKRNAMDAKFWVEFRECFKVIAEREDSDLRAIVVSGRGE 380
            +ETLL+S P   VLHV+LNRP K NAM+  FW E  ECF  IA   D+D RA+VVSG G+
Sbjct:   37 YETLLVSRPRENVLHVELNRPNKMNAMNQAFWREMVECFNAIAA--DTDCRAVVVSGAGK 94
[Close]
BLAST of mRNA_P-littoralis_Contig1.422.1 vs. uniprot
Match: UPI001CF3EB97 (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF3EB97)

HSP 1 Score: 69.3 bits (168), Expect = 1.830e-10
Identity = 36/66 (54.55%), Postives = 47/66 (71.21%), Query Frame = 3 
Query:  183 STMYDAFETLLISWPAPCVLHVQLNRPTKRNAMDAKFWVEFRECFKVIAEREDSDLRAIVVSGRGE 380
            ST   +FETL +S P   V+HV+LNRP KRNAM+  FW E  ECFK IA+  DS+ RA+V++G G+
Sbjct:   47 STGSYSFETLAVSKPHEHVIHVELNRPEKRNAMNKAFWREMVECFKQIAD--DSNCRAVVLTGAGK 110
[Close]
BLAST of mRNA_P-littoralis_Contig1.422.1 vs. uniprot
Match: K7FK55_PELSI (Enoyl-CoA hydratase 1 n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=K7FK55_PELSI)

HSP 1 Score: 67.8 bits (164), Expect = 2.200e-10
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  177 GGSTMYDAFETLLISWPAPCVLHVQLNRPTKRNAMDAKFWVEFRECFKVIAEREDSDLRAIVVSGRGE 380
            GG+    ++ETL +S     VLHV+LNRP KRNAM+A FW E  ECF  IA+  D +  A+VVSG G+
Sbjct:   42 GGAPAAHSYETLAVSRAREKVLHVELNRPDKRNAMNAAFWREMVECFSKIAQ--DPECHAVVVSGAGK 107
[Close]
BLAST of mRNA_P-littoralis_Contig1.422.1 vs. uniprot
Match: UPI0003C4BA93 (delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial n=1 Tax=Pelodiscus sinensis TaxID=13735 RepID=UPI0003C4BA93)

HSP 1 Score: 67.8 bits (164), Expect = 3.020e-10
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 3 
Query:  177 GGSTMYDAFETLLISWPAPCVLHVQLNRPTKRNAMDAKFWVEFRECFKVIAEREDSDLRAIVVSGRGE 380
            GG+    ++ETL +S     VLHV+LNRP KRNAM+A FW E  ECF  IA+  D +  A+VVSG G+
Sbjct:   26 GGAPAAHSYETLAVSRAREKVLHVELNRPDKRNAMNAAFWREMVECFSKIAQ--DPECHAVVVSGAGK 91
[Close]
BLAST of mRNA_P-littoralis_Contig1.422.1 vs. uniprot
Match: A0A8D2HHY4_UROPR (Enoyl-CoA hydratase 1 n=11 Tax=Sciuridae TaxID=55153 RepID=A0A8D2HHY4_UROPR)

HSP 1 Score: 67.4 bits (163), Expect = 1.080e-9
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 3 
Query:  198 AFETLLISWPAPCVLHVQLNRPTKRNAMDAKFWVEFRECFKVIAEREDSDLRAIVVSGRGE 380
            ++E+LL++     +LHVQLNRP KRNAM+  FW E  ECF  IA+  DSD RA+V+SG G+
Sbjct:   98 SYESLLVTPAEKHILHVQLNRPDKRNAMNKAFWREMVECFNKIAQ--DSDCRAVVISGAGK 156
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBQ0_ECTSI4.700e-1965.63Peroxisomal enoyl-coenzyme A hydratase n=2 Tax=Ect... [more]
A0A4P9ZX98_9FUNG1.990e-1147.76ClpP/crotonase-like domain-containing protein n=1 ... [more]
UPI00077AEEBD3.200e-1154.55delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
A0A6G1R1G6_9GRUI9.070e-1147.95Enoyl-CoA hydratase 1 (Fragment) n=1 Tax=Hypotaeni... [more]
UPI0015612C809.280e-1152.17delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
A0A8C4TL06_ERPCA1.690e-1058.33Enoyl-CoA hydratase 1 n=2 Tax=Polypteridae TaxID=8... [more]
UPI001CF3EB971.830e-1054.55delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
K7FK55_PELSI2.200e-1051.47Enoyl-CoA hydratase 1 n=1 Tax=Pelodiscus sinensis ... [more]
UPI0003C4BA933.020e-1051.47delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitoc... [more]
A0A8D2HHY4_UROPR1.080e-954.10Enoyl-CoA hydratase 1 n=11 Tax=Sciuridae TaxID=551... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1838505..1839129 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBQ0
Preferred nameECH1
PFAMsECH_1
Model size625
Max annot lvl2759|Eukaryota
KEGG koko:K12663
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005777,GO:0005782,GO:0005829,GO:0006082,GO:0006605,GO:0006625,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006886,GO:0006996,GO:0007031,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009987,GO:0015031,GO:0015833,GO:0016042,GO:0016043,GO:0016054,GO:0016853,GO:0016860,GO:0016863,GO:0019395,GO:0019752,GO:0030258,GO:0031907,GO:0031974,GO:0032787,GO:0033036,GO:0033365,GO:0034440,GO:0034613,GO:0042579,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043574,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046395,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051750,GO:0055114,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072329,GO:0072594,GO:0072662,GO:0072663,GO:1901575
Exons1
Evalue3.57e-22
EggNOG OGsKOG1681@1|root,KOG1681@2759|Eukaryota
Ec32 ortholog descriptionperoxisomal enoyl-coenzyme A hydratase
Ec32 orthologEc-27_003160.1
Descriptiondelta3,5-delta2,4-dienoyl-CoA isomerase activity
Cds size207
COG categoryS
BRITEko00000,ko00001,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789324.639907-UTR-P-littoralis_Contig1:1838504..18387341680789324.639907-UTR-P-littoralis_Contig1:1838504..1838734Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1838505..1838734 -
1680789324.6632173-UTR-P-littoralis_Contig1:1838941..18391291680789324.6632173-UTR-P-littoralis_Contig1:1838941..1839129Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1838942..1839129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789324.6518161-CDS-P-littoralis_Contig1:1838734..18389411680789324.6518161-CDS-P-littoralis_Contig1:1838734..1838941Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1838735..1838941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.422.1prot_P-littoralis_Contig1.422.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1838735..1838941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.422.1

>prot_P-littoralis_Contig1.422.1 ID=prot_P-littoralis_Contig1.422.1|Name=mRNA_P-littoralis_Contig1.422.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=69bp
MYDAFETLLISWPAPCVLHVQLNRPTKRNAMDAKFWVEFRECFKVIAERE
DSDLRAIVVSGRGESAMQ*
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mRNA from alignment at P-littoralis_Contig1:1838505..1839129-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.422.1 ID=mRNA_P-littoralis_Contig1.422.1|Name=mRNA_P-littoralis_Contig1.422.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=625bp|location=Sequence derived from alignment at P-littoralis_Contig1:1838505..1839129- (Pylaiella littoralis U1_48)
CCTTTCTCCATGCGATGTGCTTGCGAGAGGGATCATGATACCGTTGCCCT
ATAAATGAGAGCAGCAGCGTCGAACTCCCCGCGCGCGCGGTCTTGTATGA
TAGCGTTTCAGCCTTCAGCCTGCCTAGATAGCTTCGCACGAAGTTAGCCT
GCAGCACAACACCAACAACAGGGGGAGGGGGTAGCACGATGTACGACGCT
TTCGAAACATTACTCATCTCTTGGCCGGCACCATGTGTACTGCATGTGCA
GCTGAACCGGCCAACGAAAAGGAATGCCATGGACGCAAAGTTTTGGGTAG
AGTTTCGAGAGTGCTTCAAGGTAATCGCGGAGCGGGAGGATTCGGACCTG
CGCGCGATTGTAGTGTCTGGAAGAGGTGAGAGCGCAATGCAGTGAAAGAA
GTAGCGCCTGTTTCAGGGGGTTATGAAAGCGGTGATTTGTCGTTGTCACG
ACCACCTCCATTGCTTTATAGGAGATGGCGTTGCGCCTTTCGTGAAAGTC
TGGGAACAGATTCTTCCGCAAGGCCCTTTCTAATCATTCCGGATTTTTGC
CGGGAAACAGAGAACCAATGAACTGAGTTTCGCTCTGTTCTAAACGATTG
GGCGAGTATTTTTTTTCAAAATGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1838505..1839129-

>mRNA_P-littoralis_Contig1.422.1 ID=mRNA_P-littoralis_Contig1.422.1|Name=mRNA_P-littoralis_Contig1.422.1|organism=Pylaiella littoralis U1_48|type=CDS|length=207bp|location=Sequence derived from alignment at P-littoralis_Contig1:1838505..1839129- (Pylaiella littoralis U1_48)
ATGTACGACGCTTTCGAAACATTACTCATCTCTTGGCCGGCACCATGTGT
ACTGCATGTGCAGCTGAACCGGCCAACGAAAAGGAATGCCATGGACGCAA
AGTTTTGGGTAGAGTTTCGAGAGTGCTTCAAGGTAATCGCGGAGCGGGAG
GATTCGGACCTGCGCGCGATTGTAGTGTCTGGAAGAGGTGAGAGCGCAAT
GCAGTGA
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