mRNA_P-littoralis_Contig1.421.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.421.1
Unique NamemRNA_P-littoralis_Contig1.421.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.421.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 7.260e-51
Identity = 80/103 (77.67%), Postives = 91/103 (88.35%), Query Frame = 1 
Query:   49 KKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRIPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTF 357
            K D  TCAWAQ+LED+DL+D TS+ A+KFREDFR+PYPFFLRLVE+VK+KDWFAT QRDA+GR+CHPVEHKVLACLTIL RGN FGSIY LSWMS+  VQK F
Sbjct:   57 KNDTSTCAWAQVLEDEDLKDPTSIAAKKFREDFRVPYPFFLRLVELVKKKDWFATTQRDAYGRRCHPVEHKVLACLTILGRGNVFGSIYNLSWMSTPTVQKVF 159
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BLAST of mRNA_P-littoralis_Contig1.421.1 vs. uniprot
Match: A0A6H5L0X4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0X4_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.430e-44
Identity = 76/114 (66.67%), Postives = 90/114 (78.95%), Query Frame = 1 
Query:   16 PLEKRTRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRIPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTF 357
            P E+  R QR++KD+ETCAWAQLLEDKDLED+TS+TA++FR DFR+PY FFLRLV +VK K+WF  A  DA GR  HPVEHKVLA LTIL R NCF SI+ +SWMS+  VQ  F
Sbjct:   91 PFERLARSQRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFLAAATDAVGRASHPVEHKVLAWLTILGRNNCFASIFQVSWMSAKTVQGMF 204
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BLAST of mRNA_P-littoralis_Contig1.421.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 4.150e-44
Identity = 77/119 (64.71%), Postives = 91/119 (76.47%), Query Frame = 1 
Query:    1 PDEEQPLEKRTRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRIPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTF 357
            PD  +P   RT+RQRK  D++TCAWAQ+LEDKDLED+ S T+++FR DFR+PY FFLRLV +VK K+WF TA  D  GR  HPVEHKVLA LTIL RGNCF SIY +SWMS+  VQ  F
Sbjct:   41 PDLPRPRLSRTQRQRK--DVKTCAWAQMLEDKDLEDSNSRTSKQFRLDFRVPYSFFLRLVALVKSKNWFVTAGCDGAGRHSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMF 157
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BLAST of mRNA_P-littoralis_Contig1.421.1 vs. uniprot
Match: A0A6H5JBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL1_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.260e-42
Identity = 74/114 (64.91%), Postives = 88/114 (77.19%), Query Frame = 1 
Query:   16 PLEKRTRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRIPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTF 357
            P  K +R QRK+KD+E CAWA++LEDKDLED+ S+T+++FR DFR+PY FFLRL  +VK KDWF T+  DA GRQ H VEHKVLA LTIL RGNCF SIY +SWMS   VQ  F
Sbjct:   76 PRPKLSRGQRKRKDVEKCAWAKMLEDKDLEDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDAAGRQSHQVEHKVLAWLTILGRGNCFASIYQMSWMSGKTVQTMF 189
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BLAST of mRNA_P-littoralis_Contig1.421.1 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.440e-41
Identity = 72/107 (67.29%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:   16 PLEKRTRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRIPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSS 336
            P  K  R QRK+KD+E CAWAQ+LEDKDL+D+ S+T+++FR DFR+PY FFLRL  +VK KDWF T+  DA GRQ HPVEHKVLA LTIL RGNCF SIY +SWMS+
Sbjct:   80 PRPKLNRGQRKRKDVEKCAWAQMLEDKDLDDSNSITSKQFRLDFRVPYSFFLRLGALVKSKDWFTTSGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSA 186
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BLAST of mRNA_P-littoralis_Contig1.421.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 147 bits (371), Expect = 2.390e-40
Identity = 76/119 (63.87%), Postives = 91/119 (76.47%), Query Frame = 1 
Query:    1 PDEEQPLEKRTRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRIPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTF 357
            PD  +P   RT+RQRK   +E CAWA++LEDKDLE++ S T+++FR DFR+P  FFLRLV +VK K+WFATA  DA GRQ HPVEHKVLA LTIL RGNCF SIY +SWMS+  VQ  F
Sbjct:   41 PDLTRPRLSRTQRQRKY--VERCAWARMLEDKDLEESNSRTSKQFRLDFRVPCAFFLRLVALVKSKNWFATAGCDAAGRQSHPVEHKVLAWLTILGRGNCFASIYQMSWMSAATVQAMF 157
[Close]
BLAST of mRNA_P-littoralis_Contig1.421.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 4.880e-40
Identity = 69/106 (65.09%), Postives = 85/106 (80.19%), Query Frame = 1 
Query:   40 QRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRIPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTF 357
            +RK+K++E CAWAQ+LEDKDLED+ S+++++FR DFR+P  FFLRLV +VK KDWF T+  DA  RQ HPVEHKVLA LTIL RGNCF SIY +SWMS+  VQ  F
Sbjct:   25 ERKRKEVEKCAWAQMLEDKDLEDSNSISSKQFRLDFRVPDSFFLRLVALVKSKDWFTTSGCDAARRQSHPVEHKVLAWLTILGRGNCFASIYQVSWMSAKTVQTMF 130
[Close]
BLAST of mRNA_P-littoralis_Contig1.421.1 vs. uniprot
Match: A0A6H5JSI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSI1_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 2.960e-33
Identity = 57/82 (69.51%), Postives = 69/82 (84.15%), Query Frame = 1 
Query:   16 PLEKRTRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRIPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHK 261
            P E+ TR QR+KKD+ETCAWAQLLEDKDLED+TS+TA++FR DFR+P+ FFLRLV +VK K+WF+TA  DA GR  HP EHK
Sbjct:   29 PRERLTRSQRQKKDVETCAWAQLLEDKDLEDSTSITAKQFRGDFRVPFTFFLRLVALVKSKNWFSTAVTDAVGRASHPGEHK 110
[Close]
BLAST of mRNA_P-littoralis_Contig1.421.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 8.210e-33
Identity = 62/92 (67.39%), Postives = 72/92 (78.26%), Query Frame = 1 
Query:   82 LLEDKDLEDTTSVTAEKFREDFRIPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNCFGSIYMLSWMSSTVVQKTF 357
            LLEDKDLED+TS+TA++ R DFR+PY  FLRLV +VK K+WF+TA  DA G   HPVEHKVLA LTIL RGNCF SIY +SWMS+  VQ  F
Sbjct:   26 LLEDKDLEDSTSITAKQLRVDFRVPYTVFLRLVALVKSKNWFSTAVTDAVGWASHPVEHKVLAWLTILGRGNCFASIYQMSWMSAKTVQGMF 117
[Close]
BLAST of mRNA_P-littoralis_Contig1.421.1 vs. uniprot
Match: A0A6H5KLY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLY4_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 1.460e-32
Identity = 55/78 (70.51%), Postives = 67/78 (85.90%), Query Frame = 1 
Query:   40 QRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFRIPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLAC 273
            QR++KD+ETCAWAQLLEDKDLED+TS+TA++FR DFR+PY FFLRLV +VK K+WF+TA +DA GR  HPVEHK   C
Sbjct:   85 QRQRKDVETCAWAQLLEDKDLEDSTSITAKQFRVDFRVPYTFFLRLVALVKSKNWFSTAGKDAIGRASHPVEHKDRRC 162
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBE2_9PHAE7.260e-5177.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0X4_9PHAE2.430e-4466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE4.150e-4464.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JBL1_9PHAE2.260e-4264.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KFR8_9PHAE1.440e-4167.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI2.390e-4063.87Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5JHI0_9PHAE4.880e-4065.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSI1_9PHAE2.960e-3369.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNX4_9PHAE8.210e-3367.39DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KLY4_9PHAE1.460e-3270.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1835545..1838003 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0SBY6
PFAMsPlant_tran
Model size361
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue0.000144
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size357
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789324.600555-CDS-P-littoralis_Contig1:1835546..18356421680789324.600555-CDS-P-littoralis_Contig1:1835546..1835642Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1835547..1835642 -
1680789324.6102448-CDS-P-littoralis_Contig1:1837742..18380031680789324.6102448-CDS-P-littoralis_Contig1:1837742..1838003Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1837743..1838003 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.421.1prot_P-littoralis_Contig1.421.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1835547..1838003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.421.1

>prot_P-littoralis_Contig1.421.1 ID=prot_P-littoralis_Contig1.421.1|Name=mRNA_P-littoralis_Contig1.421.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=119bp
PDEEQPLEKRTRRQRKKKDIETCAWAQLLEDKDLEDTTSVTAEKFREDFR
IPYPFFLRLVEVVKRKDWFATAQRDAFGRQCHPVEHKVLACLTILARGNC
FGSIYMLSWMSSTVVQKTF
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mRNA from alignment at P-littoralis_Contig1:1835545..1838003-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.421.1 ID=mRNA_P-littoralis_Contig1.421.1|Name=mRNA_P-littoralis_Contig1.421.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2459bp|location=Sequence derived from alignment at P-littoralis_Contig1:1835545..1838003- (Pylaiella littoralis U1_48)
CCCGATGAGGAGCAGCCGCTCGAGAAGCGCACGCGAAGGCAGAGGAAGAA
GAAAGACATCGAGACGTGTGCTTGGGCGCAGCTCCTCGAGGATAAAGACC
TGGAGGACACGACGTCCGTAACGGCGGAAAAGTTTCGAGAGGACTTTCGC
ATCCCCTACCCGTTTTTCCTGCGGCTTGTCGAAGTGGTGAAGAGGAAGGA
CTGGTTCGCCACTGCACAGCGCGACGCATTTGGGCGGCAATGCCACCCAG
TGGAGCACAAGGTGGGCTCAGGAAGTTGATCACTCGTCAATACTTGTTGC
TTGTTGTGGCGTCTGTACGGTTTTATAGCCGCATAAACTCTCGGTGCGTT
TGAATTTGCGGAGATGAAGGATTCAAAAATCGTATGACACCAACAACGGA
TGGCACGAATAAATGGGACGAACACACACACACACACACACACACACACA
CACACATGCTCGAGATGGTACCCCAACGTTACCCTCTGATATCTCCTTTC
GTTTGGGTGGCCATGGCTTTGTTCCCTTGATTTTTATCTTCCTCCTATCG
TAGCACGATATGTGCGTGGTTTGTGACCACGGGCTAGACTACGGTTGTGG
TGAGCTAATGTGAGAATCAACAACTATCTCAACATGCTGAAATAAATCGT
ACCTACAAAACAGACAGCAGTAGCATTCCCTGGAGGCTGCAGCGGTACTG
CTGTAGCTCTTTTACCTGCACAACAGCGGAAGTTCGGATGCCTGTACAGC
AGCAGTAGCTCTCCCCATCGTGTTATGGCAGAAACTCTACAACCTGTCCT
ATCAAGCAGGTAACTCTGGTCGCTGCGTGCACCAACATCCATCACCACCG
CCGTGCAGCATTTAGGTGCTGATGGGCGCAGCTCTTCTTCGCAAGGGTGC
ATGCATGTGCATGCATATATGCATACAGCAGTAATCGTTTTACACAGAGT
GTGAACATCTGGGTTGGAAGAGGGAAGCTGGCCATGCGGCGGCAAATACA
CCAGACAGCAGACACGCTTTCTGCTTCCTGCTTGTGGTGCCCTGTGATAT
CATACCATACCATGTCATATCATATCATATCATAGATCATATCATTTCAC
ATCATTTCATATCATTTCATGTCATTTCATATCATTTCATATCATATCCT
ATCATATCTTATCAGACCAGATCAAATCTGGTCCGATCGGATCAGATTAC
AGTACAGTAGATCGGATTAGATCAGATCAGATCAAAACATCGCGTAGCAT
ATGATATCATATCATCACATGTCACATCACATTATAGTACATAAACGTTT
GTTGGCAGGCGCAGGTAACGTGATAAGAGCCGGTTACCCGGTGTGTTCGA
TCTCACAGCAGGGATCGGCAGGCACCACTGGTCGCACGGGATACAACTGC
ACAGTACTTGTCTTTTGTTCTCGGCTTCTGGTACTGGGCTCTTCCCAGAA
GGCTAGGAGCCTGCCTTCTTTTTGTTATGTCGGGCAGAAAGCGTTTCGCA
CAAAGCAGACAGTCCCGACCACAACACACCACAATCTCGCCGCTCTAGAG
TGCGCATCAGCTTACGGAGGGCAGCAGCACATCCCCACAGCGCGATCGAA
ATACACACAGGGGCCGCGACAAAGGCCCGCGATAGACTGGAGCGATTGGT
TTGATAAGCAGAAGGGTTGCCCGGCCGTTATCCTGTCGCCAACCGAGCTG
GGAACGTGTCTTCCGTGGTGCTGCTGTGTCATCAGCTGCCGTTTCTTTTC
CAGTATACTACAACAGCCGTCCACCACAACTACTCATTTTTTCCCACTTG
AACGTTGTTCAGCATACGCACATCTCTAAGCCCCTCGAGGCGCACGCCTT
CATCCTCTCCACTGGTTCGCGGCTCTGTCTGCTGTCTGCTGTTCCCTATT
CTCTGACTGGTACGTGATTGCTTCTCCTCCTGCTGCTGCTGCTGGATGTA
GCCCATCCACCAGCATCGTCTGTCTTCTGTGTTGCTGTTGCATATTTCTT
GTTCTTGCATCACACACACAAATATATGCTGCTGCTGTATGCTGTACACC
ACGACGATGCTTGAACCGGGTACCTCTATACGTTATGCAATGTGGATAAT
TTCTATGATGTCGGGATTTGTGTTGGTGCCCCTTGTTGTGTCTTGTTTAA
GTTGGGACGTGAAGAAGAAAGGCGCTGAGGTGCCTCTTCCACGTCGGGAA
GACCGGACTCGAAACTGAAACAGTCAGATGCTCAATTCGATGATCAACCC
CACCAGGGTTAACGCGACACCCCACACGATAGCCTGACGTCTTACAACCA
TGTACTCCCTCCACGAACCCCTTTTTTTTTTTACCTTTTGCAACTGGTGC
TAATATTGCAGGTCCTGGCCTGCCTTACCATACTGGCCAGGGGAAACTGT
TTCGGAAGCATCTACATGCTTTCATGGATGAGCAGCACCGTAGTGCAGAA
GACTTTCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1835545..1838003-

>mRNA_P-littoralis_Contig1.421.1 ID=mRNA_P-littoralis_Contig1.421.1|Name=mRNA_P-littoralis_Contig1.421.1|organism=Pylaiella littoralis U1_48|type=CDS|length=357bp|location=Sequence derived from alignment at P-littoralis_Contig1:1835545..1838003- (Pylaiella littoralis U1_48)
CCCGATGAGGAGCAGCCGCTCGAGAAGCGCACGCGAAGGCAGAGGAAGAA
GAAAGACATCGAGACGTGTGCTTGGGCGCAGCTCCTCGAGGATAAAGACC
TGGAGGACACGACGTCCGTAACGGCGGAAAAGTTTCGAGAGGACTTTCGC
ATCCCCTACCCGTTTTTCCTGCGGCTTGTCGAAGTGGTGAAGAGGAAGGA
CTGGTTCGCCACTGCACAGCGCGACGCATTTGGGCGGCAATGCCACCCAG
TGGAGCACAAGGTCCTGGCCTGCCTTACCATACTGGCCAGGGGAAACTGT
TTCGGAAGCATCTACATGCTTTCATGGATGAGCAGCACCGTAGTGCAGAA
GACTTTC
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