mRNA_P-littoralis_Contig1.378.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.378.1
Unique NamemRNA_P-littoralis_Contig1.378.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1.378.1 vs. uniprot
Match: D8LI37_ECTSI (PA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI37_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 5.030e-124
Identity = 179/239 (74.90%), Postives = 202/239 (84.52%), Query Frame = 1
Query:  466 MSGFHPGHKHLRLPNVTDVSVSYAGEAQPPPGEGFDPFEREVHGPTLILDDREGQVRMDSNSSTFEIIDVWTCHYSPQSFRVKAELVVAQPTDARGGLVNGRFVRNRLVMVERGDIPIVHKVLDAQRAGALGVIVADDGRCGNSFGQLCVHGSDPPEGWAALDMPRPWLQVRVPVVLMLREDAERLAVAAGAAAEEVEAMAWSSLYDGWLDSMGSSSSAS---------VGGENWRASA 1155
            MSGFH GH+HLRLPNVTDVSV+YAGE +PPPG GFDPFEREVHGPT++LDDR  ++R+ SN+S FE IDVWTCH+SP+SF+VK+E+VVAQP DAR  L NGRFVRNR+V+V+RGDIPIVHKVL AQRAGALGVIVADDGRCG SFGQLCV+GSDPPEGWAALDMPRPWL VRVPVVLMLREDAERL  AAGAAA   E+MAW+SLYDGW+DSM S              VGG +WR S+
Sbjct:    1 MSGFHAGHEHLRLPNVTDVSVTYAGETEPPPGAGFDPFEREVHGPTVVLDDRASKIRVASNNSAFEDIDVWTCHFSPRSFKVKSEVVVAQPADARSELENGRFVRNRIVVVQRGDIPIVHKVLAAQRAGALGVIVADDGRCGGSFGQLCVYGSDPPEGWAALDMPRPWLDVRVPVVLMLREDAERLTAAAGAAAAHAESMAWTSLYDGWVDSMSSXXXXXXXXXXXXXXVGGGDWRTSS 239          
BLAST of mRNA_P-littoralis_Contig1.378.1 vs. uniprot
Match: D8LI38_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI38_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 1.510e-49
Identity = 95/128 (74.22%), Postives = 104/128 (81.25%), Query Frame = 1
Query:    1 RFSVCIVYGETTGPFSEYSKPARTAMVTAPLPVPSAPEGHAGAHSVTLRFLPPHDHGGSPVSWYHVMSRPTGENVLSKWQAVGMAAAPAPKLNVAVHDTEPQSVAVKVEHLVPGVAYQFQVCAQNDIG 384
            RFSVC+VYGET GPFSE+SKPART+MVTAPLPVP APEG  G H+VTLRFLPP DHG                 VLSKWQAVGMA APAP+L+V+VHDTEPQSVAVKVEHLVPGVAYQF+VCAQND+G
Sbjct:  705 RFSVCVVYGETAGPFSEFSKPARTSMVTAPLPVPRAPEGSPGTHAVTLRFLPPPDHG-----------------VLSKWQAVGMAPAPAPRLDVSVHDTEPQSVAVKVEHLVPGVAYQFRVCAQNDVG 815          
BLAST of mRNA_P-littoralis_Contig1.378.1 vs. uniprot
Match: A0A7S1XPP5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XPP5_9STRA)

HSP 1 Score: 168 bits (425), Expect = 4.300e-42
Identity = 129/365 (35.34%), Postives = 179/365 (49.04%), Query Frame = 1
Query:    1 RFSVCIVYGETTGPFSEYSKPARTAMVTAPLPVPSAPEGHA-GAHSVTLRFLPPHDHGGSPVSWYHVMSRPT---GENVLSKWQAVGMAAAPAPKLNVAVHDTEPQSVAVKVEHLVPGVAYQFQVCAQNDIGTSPWSAPSDPVMVL--------AAAVDQ-----TNGNGVSMSGFHPGHKHLRLPNVTDVSVSYAGEAQPPPGEGFDPFEREVHGPTLILDDREGQVRMDSNSSTFEIIDVWTCHYSPQSFRVKAELVVAQPTDA---RGGLVNGRFVRNRLVMVERGDIPIVHKVLDAQRAGALGVIVADDGRCGNSFGQLCVHGSDPP----EGWAALDMPRPWLQVRVPVVLMLREDAERL 1023
             FSV + YG+  G  SE SK ART  V AP      P G    +HSV L + PP DHGG P   + V  R      ++   +W  VG   A +    V   +    S+   V+HL+PG  YQF+V A N  G SPWS  +  +  +        A ++D       +G+G   SG H  H   +  N+T  + + A                  H  +L++D  +G   +         + VW   +SP SF V+A+L +A+P  A    GG  +   V +R+++VERG  P+V KVL AQ+AGALGVI+ DDGRC   F Q CV GSD      +G+AA D P  W +VR+P VL+L +D E L
Sbjct:  519 EFSVVLFYGDAKGKASEVSKAARTMPVAAPGRFHKVPVGVVKDSHSVQLYWEPPLDHGGDPNMHFEVERRQQFNRADHADGQWVNVGKVQAFSA---VTEDEALKNSMTTLVDHLLPGSMYQFRVSAVNSEGRSPWSVYTAALETVKAPKFRPGAGSIDSGDAPVLHGHG---SGAHRIHDAHKTGNMTAEATTGAI------------VNLHDHAHSLLVDGGDGGTNLQ--------LAVWAAAWSPASFSVRAQLAMAEPATACRAEGGAGHPSVVHHRVLLVERGGCPLVQKVLTAQKAGALGVIIVDDGRC-EKFDQHCVPGSDKVLSEGQGFAAQDHPGDWRKVRIPAVLVLADDGEVL 856          
BLAST of mRNA_P-littoralis_Contig1.378.1 vs. uniprot
Match: A0A7S3UWA2_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWA2_HETAK)

HSP 1 Score: 150 bits (379), Expect = 1.070e-38
Identity = 114/314 (36.31%), Postives = 146/314 (46.50%), Query Frame = 1
Query:  148 FLPPHDHGGSPVSWYHVMSRPTGENVLSKWQAVGMAAAPAPKLNVAVHDTEPQSVAVKVEHLVPGVAYQFQVCAQNDIGTSPWSAPSDPVMVLAAAVDQ------TNGNG-VSMSGFHP------------GHKHLRLPNVTDVSVSYAGEAQPPPGEGFDPFEREVHGPTLILDDREGQVRMDSNSSTFEI-IDVWTCHYSPQSFRVKAELVVAQPTDARGGLVNGRFVRNRLVMVERGD-IPIVHKVLDAQRAGALGVIVADDGRCGNSFGQLCVHGSDPP---EGWAALDMPRPWLQVRVPVVLMLREDAE 1017
            + PP D GG P++ YH+M   T E+    W+ +G      P       D     +   V HL+PG AY F+V A+   G   WSAPS P       ++       T G G V   G+ P               HL   + +D   SY                 + HGP + L D E ++ +        + +  WTC +SPQ+F V AE V A P  A   L N   +R RL +V RG  +P+V K L AQ AGALGVIV DDGRC  +F Q CV G+D     E WA  D P PW  VRVPVVL+L  DAE
Sbjct:    8 WFPPEDDGGEPITGYHLMKLHTDEHTHDDWEFLGTF---FPNF-----DPNMGGLCHTVPHLLPGTAYSFKVAARTAAGDGLWSAPSPPARTPLPQLEVDPKGKVTGGTGHVYGRGWDPITHTSFKKDMFEAPLHLET-HSSDKKTSY-----------------DQHGPVVTLHDHEARLEVRRGGGGPAVAVAAWTCAWSPQAFSVTAEAVRADPFLADRPLRNKAVLRKRLALVGRGGGVPLVTKALRAQAAGALGVIVVDDGRC-RAFDQRCVRGADLAARGELWARGDRPGPWRGVRVPVVLVLAGDAE 294          
BLAST of mRNA_P-littoralis_Contig1.378.1 vs. uniprot
Match: A0A7S2WLH8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLH8_9STRA)

HSP 1 Score: 156 bits (394), Expect = 2.770e-38
Identity = 116/370 (31.35%), Postives = 180/370 (48.65%), Query Frame = 1
Query:    4 FSVCIVYGETTGPFSEYSKPARTAMVTAPLPVPSAP----------EGHAGAHSVTLRFLPPHDHGGSPVSWYHVMSRPTGENVLSKWQAVGMAAAPAPKLNVAVHD---TEPQSVAVKVEHLVPGVAYQFQVCAQNDIGTSPWSAPSDPVMVLAAAVDQTNGNGVSMSGFHPGHKHLRLPNVTDVSVSYAGEAQPPPGEGFDPFER----EVHGPTLILDDREGQVRMDSNSSTFEIIDVWTCHYSPQSFRVKAELVVAQPT-----------DARGGLVNGRFVRNRLVMVERGDIPIVHKVLDAQRAGALGVIVADDGRCGNSFGQLCVHGSDPP--EGWAALDMPRPWLQVRVPVVLMLREDAERL 1023
            F + + YGET+ P S  S+   T  ++AP  + S P          +G      +++   PP D GG+ V  + V  R   E +   W  +G    P   ++  V D   TE   +A +++HL+P   Y+F++ A N IG +   AP     +    V +     V  SG    H+ + L +  ++   +  ++     E           EVHGP + L D    V ++    T   + VW  H+SP++++V AE++V  P              R  L N   V++R+ ++ERG +P+VHK   AQ AGAL VIV DDG+C   F QLC  G+D    +G+A LD+  PW ++R+PVVLMLR DA++L
Sbjct:  317 FRIMVYYGETSSPSSASSRIVHTPALSAPSRMESPPVLWRRPSKQDKGKLTGTKLSIVASPPVDDGGADVKGFIVQRRHVQEEMHDDWVTLGSF--PIHWVDHVVSDDGATE-HRLAFELDHLLPNCDYEFRIAAYNKIGVA---APGTGSRLRTNPVSRAGEEVVGGSG----HRSMPLHHFRELDEDFHTDSAAEVREHLKALHSSTFFEVHGPVVTLSDLLQTVTLEK-PGTGLTLPVWVSHWSPKAYKVTAEVIVTDPPMGDLSEPNKLPSTRTPLHNAATVQHRIALMERGGVPLVHKAALAQDAGALAVIVTDDGKC-TEFDQLCCPGADKKFGDGFAKLDLAAPWEKIRIPVVLMLRADADKL 674          
BLAST of mRNA_P-littoralis_Contig1.378.1 vs. uniprot
Match: A0A836CBI4_9STRA (PA domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBI4_9STRA)

HSP 1 Score: 132 bits (333), Expect = 2.950e-33
Identity = 81/198 (40.91%), Postives = 106/198 (53.54%), Query Frame = 1
Query:  466 MSGFHPGHKHLRLPNVTDVSVSYAGEAQPPPGEGFDPFEREVHGPTLILDDREGQVRMDSNSSTFEI------IDVWTCHYSPQSFRVKAELVVAQPTDARGG-LVNGRFVRNRLVMVERGDIPIVHKVLDAQRAGALGVIVADDGRCGNS--FGQLCVHGSDPPEGWAALDMPRPWLQVRVPVVLMLREDAERLAVA 1032
            + G H       LP   D +V YA     P        ER   GPT+ LD    +V +  +     I      + VW  H+SP++  V AEL+ A P DA    L N  FVR R+ +V RG +P+VHKV+ AQRA AL V++ADDG C ++  F Q C+ GS PP+GWA  D   PW +VR+P VLML+E A  L  A
Sbjct:    1 VQGIHGNAPLQPLPTPRDPAVRYADFGGAPIVGLHAHAERMARGPTVTLDAARERVHVADDRGPLAIALGGADVPVWAGHFSPRTHLVTAELIPADPPDAAAPELRNASFVRGRIALVTRGAVPLVHKVMAAQRARALAVVIADDGSCTHAGGFSQFCMPGSSPPDGWAREDSEGPWREVRIPHVLMLKEHAAVLLAA 198          
BLAST of mRNA_P-littoralis_Contig1.378.1 vs. uniprot
Match: A0A8K1C2W5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C2W5_PYTOL)

HSP 1 Score: 139 bits (351), Expect = 2.680e-32
Identity = 118/360 (32.78%), Postives = 172/360 (47.78%), Query Frame = 1
Query:    4 FSVCIVYGETTGPFSEYSKPART---AMVTAPLPVPSAPEGHAGAHSVTLRFLPPHDHGGSPVSWYHVMSRPTGENVLSKWQAVGMAAAPAPKLNVAVH---DTEPQSVAVKVE---HLVPGVAYQFQVCAQNDIGTSPWSAPSDPVMVLAAAVDQTNGN------GVSMSGFHPGHKHL--RLPNVTDVSVSYAGEAQPPPGEGFDPFEREVHGPTLILDDREGQVRMDSNSSTFEIIDVWTCHYSPQSFRVKAELVVAQPTDARGGLVNGRFVRNRLVMVERGDIPIVHKVLDAQRAGALGVIVAD-DGRCGNSFGQLCVHGSDPP--EGWAALDMPRPWLQVRVPVVLMLREDAERL 1023
            F + I  GE  G  S+ S+  RT   A+  A   VP A      A  + LR+L P D GG  ++ Y V  R   +      ++   +     +  V ++   D   QS    V    +LVPG  +Q +V A N IG  PWSA SDP   L+     +  N      G+    +    + L  +L N T   V+ A  A     +G          P ++L D + +  +   + T    DVW+ H+SP+ F+V +E+  A P DA   LVN   V++R+V++ RG++P V KV  AQ AGALGVI+ D +G C N F Q CV G+D    EG+   D    W ++R+P VL L+E + RL
Sbjct:  561 FDLRIWVGEAIGMESDRSRSIRTKPCAVPDAVRGVPYATSTENAATCLKLRWLEPSDDGGRRINAYLVALRELKDPSTDVLESEDPSRTDETEQLVVINATSDVSRQSDVWSVSSVCNLVPGTTFQVRVAAVNIIGVGPWSARSDPA-TLSPYDKSSRLNEIPVLYGIGDPRYSRASRFLTQQLNNATLALVTEAQRASTDTYQGV--------RPRIVLSDIQEKAIVAVGADTELQFDVWSGHFSPRKFQVSSEIARADPFDASSPLVNAADVKDRVVIIARGNVPFVFKVYHAQLAGALGVIIGDFNGTCHNRFDQRCVPGADRTRGEGFGLHDRHVLWQRIRIPFVLALKEASTRL 911          
BLAST of mRNA_P-littoralis_Contig1.378.1 vs. uniprot
Match: A0A8J2X4D2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X4D2_9STRA)

HSP 1 Score: 137 bits (344), Expect = 1.840e-31
Identity = 114/365 (31.23%), Postives = 159/365 (43.56%), Query Frame = 1
Query:    4 FSVCIVYGETTGPFSEYSKPARTAMVTAPLPVPSAPEGHAGAHSVTLRFLPPHDHGGSPVSWYHVMSRP-TGENVLSKWQAVGMAAAPAPKLNVAVHDTEPQSVAVKVEHLVPGVAYQFQVCAQNDIGTSPWSAPSDPVMVLAAAVDQTNGNGVSMSGFHPG---HKHLRLPNVTDVSVSYAGEAQPPPGEG-----------FDPFEREVHGPTL-----------ILDDREGQVRMDSNSSTFEIIDVWTCHYSPQSFRVKAELVVAQPTDARGGLVNGRFVRNRLVMVERGDIPIVHKVLDAQRAGALGVIVADDGRCGNSFGQLCVHGSDPPEG--WAALDMPRPWLQVRVPVVLMLREDA 1014
            F V + YGE  GP+S+ S+ A T    AP  +  +     G   +TL    P D GGS +    +  R    EN    W+ VG  A     L + V +     +    E      +Y+F V   N +G +PWS P+ P          TN    ++S  H     H    +P   ++      E +    E            FD     VHGP +           + D      R   N+        W CH+SP+  +  AELV A P DA     N   +R R+V+V+RG  P+  K L AQRAGALGV++AD+G+C  +  Q CV G+D   G  WA LD+ RPW  V +PVVL+L + A
Sbjct:  381 FRVRVYYGEVEGPWSKPSEEASTPARGAPSKIVGSSVQALG-RGLTLTVPRPFDDGGSTIKGLVLRFRHHDSENFPGAWRHVGSFATKDWPLQLDVTN----ELLTSREDSSHNHSYEFSVAPYNRLGVAPWSGPTAPCA--------TNNEEKAVSYGHGAFDRHTRHHIPTDDELVQIATEEGKKLYEEASHYVRKHLDDLFDEHAHSVHGPLVSIGGSLTASLDVYDSLHNYRR--PNARPDYSAQAWLCHWSPRGHKAVAELVAADPLDACSTHKNAAPLRGRVVLVKRGQCPLATKALLAQRAGALGVVIADNGKC-TALDQYCVPGADRSRGEAWARLDLQRPWAGVHIPVVLVLADSA 729          
BLAST of mRNA_P-littoralis_Contig1.378.1 vs. uniprot
Match: A0A7S3JZQ1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JZQ1_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.370e-30
Identity = 107/368 (29.08%), Postives = 170/368 (46.20%), Query Frame = 1
Query:    4 FSVCIVYGETTGPFSEYSKPARTAMVTAP--LPVPSAPEGHAGAHSVTLRFLPPHDHGGSPVSWYHVMSRPTGENVL-SKWQAVGMAAAPAPKLNVAVHDTEP---QSVAVKVEHLVPGVAYQFQVCAQNDIGTSPWSAPSDPVMVLAAAVDQTNGNGVSMSGFHPGHKHLRLPNVTDV------------SVSYAGEAQPPPGEGFDPFEREVH-GPTLILDDREGQVRMDSNSSTFEII-------DVWTCHYSPQSFRVKAELVVAQPTDARGGLVNGRFVRNRLVMVERGDIPIVHKVLDAQRAGALGVIVADDGRCGNSFGQLCVHGSDPP--EGWAALDMPRPWLQVRVPVVLMLREDAERL 1023
            F   I YG+  GP+S +S    T +  AP  +  P        A  + ++  PP+  GG P+  + +  R     ++ S+W + G  A  +    + +H   P   Q   +K  H     AY FQ  A N +G S WS PS+P+    A     +G G   +     H HL   N  D             ++S   E+              +H GP   +  R+ ++++ S+    + +       + W  H+SP    V AE++ AQP  A   L    +  +R+ +  RGD+P V K   AQR GAL +++ADDGRCG+S  Q CV G++    EG+AALD P+ W  + +P+VL+L++DA+ +
Sbjct:  332 FRTRIKYGDAYGPWSLWSDGIATRLRGAPRGMSPPHTIRPGVDASILQVQVDPPNIDGGDPIRGFLIRYRHVDTELMRSEWLSAGSFAVNS---IITIHGLLPNHCQEELIKERH-----AYIFQAAAYNRLGLSEWSPPSEPIATACALHTLVHGRGAQRNF---AHHHLHDENEKDPDLWAPARVFVTSAISLLHESH-----------LSLHLGPIATV--RDNKLQIWSHEFYGQPLRPPLYRCEAWFAHWSPPQISVAAEIIRAQPILANAPLQKELY--HRVAIANRGDVPFVVKAKHAQRTGALALVIADDGRCGDSLDQYCVPGAERARGEGFAALDNPKQWSSIHIPIVLILKKDADEV 673          
BLAST of mRNA_P-littoralis_Contig1.378.1 vs. uniprot
Match: A0A662X3D5_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3D5_9STRA)

HSP 1 Score: 133 bits (335), Expect = 3.480e-30
Identity = 118/380 (31.05%), Postives = 166/380 (43.68%), Query Frame = 1
Query:    4 FSVCIVYGETTGPFSEYSKPARTAMVTAPLPVPSAPEGH-AGAHSVTLRFLPPHDHGGSPVSWYHVMSRPTGE----NVLSKWQAVGMAAAPAPKLNVAVHDTEPQSVAVKVEH--------------LVPGVAYQFQVCAQNDIGTSPWSAPSDPVMVLAAA---------------VDQTNGNGVSMSGFHPGHKHLRLPNVTDVSVSYAGEAQPPPGEGFDPFEREVHGPTLILDDREGQVRM---DSNSSTFEIIDVWTCHYSPQSFRVKAELVVAQPTDARGGLVNGRFVRNRLVMVERGDIPIVHKVLDAQRAGALGVIVAD-DGRCGNSFGQLCVHGSDPP--EGWAALDMPRPWLQVRVPVVLMLREDAERL 1023
            FSV ++ GE  G  S  S+   T+  T P PV   PE H   A  +TLR++   D GG  +  Y V +    E    N  +  ++V  A        V   +       +  E               L PG AY F+V A N +G   WS  S  + +   +               V    G G        G + L   ++T +  S             +    +   P ++L D E QV +   D +  +    + W  HYSP+ F V AELV+A P DA   L+N   VR+R+V+  RG  P V K+  AQRAGALG+I+AD +G CG +F Q CV G+D    EG+AA D    W Q R+P VL+L++ A  L
Sbjct:  648 FSVRLLVGEARGAASGPSRLVVTSARTPPSPVRGMPEAHDIQATCLTLRWIDAEDDGGREIELYLVATEELPEKSERNGYNSGRSVEDATIVREHEKVTAFNASKSHGQISAEPSVSGASWKSTQVCGLFPGAAYTFRVAAMNALGAGHWSRRSARIEIPPRSHFFPSADTGRRQKYVVPMLKGMGDPAYTVMSGVEMLSQSDLTSLVTSNPHRILRASSGQIE----DAALPRVVLSDVEEQVALLADDGDVESQRTFEAWAGHYSPRLFDVSAELVLADPPDASRPLLNAHAVRDRVVLAVRGGAPFVFKLHYAQRAGALGLIIADVNGTCGGNFDQSCVPGADKTRNEGFAAQDRHTLWDQTRIPCVLVLQDAALEL 1023          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI37_ECTSI5.030e-12474.90PA domain-containing protein n=1 Tax=Ectocarpus si... [more]
D8LI38_ECTSI1.510e-4974.22Fibronectin type-III domain-containing protein n=1... [more]
A0A7S1XPP5_9STRA4.300e-4235.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S3UWA2_HETAK1.070e-3836.31Hypothetical protein (Fragment) n=2 Tax=Heterosigm... [more]
A0A7S2WLH8_9STRA2.770e-3831.35Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A836CBI4_9STRA2.950e-3340.91PA domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A8K1C2W5_PYTOL2.680e-3232.78Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J2X4D2_9STRA1.840e-3131.23Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3JZQ1_9STRA2.370e-3029.08Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A662X3D5_9STRA3.480e-3031.05Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1628886..1631999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LI37
PFAMsMyb_DNA-binding,PA
Model size1207
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons6
Evalue8.24e-125
EggNOG OGs29K29@1|root,2RTB6@2759|Eukaryota
Cds size1089
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.378.1prot_P-littoralis_Contig1.378.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1628929..1631924 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789322.608792-UTR-P-littoralis_Contig1:1628885..16289281680789322.608792-UTR-P-littoralis_Contig1:1628885..1628928Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1628886..1628928 -
1680789322.680469-UTR-P-littoralis_Contig1:1631924..16319991680789322.680469-UTR-P-littoralis_Contig1:1631924..1631999Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1631925..1631999 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789322.6179357-CDS-P-littoralis_Contig1:1628928..16292641680789322.6179357-CDS-P-littoralis_Contig1:1628928..1629264Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1628929..1629264 -
1680789322.6325297-CDS-P-littoralis_Contig1:1629674..16298101680789322.6325297-CDS-P-littoralis_Contig1:1629674..1629810Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1629675..1629810 -
1680789322.643333-CDS-P-littoralis_Contig1:1630036..16302081680789322.643333-CDS-P-littoralis_Contig1:1630036..1630208Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1630037..1630208 -
1680789322.6516411-CDS-P-littoralis_Contig1:1630491..16306281680789322.6516411-CDS-P-littoralis_Contig1:1630491..1630628Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1630492..1630628 -
1680789322.661481-CDS-P-littoralis_Contig1:1630975..16311871680789322.661481-CDS-P-littoralis_Contig1:1630975..1631187Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1630976..1631187 -
1680789322.6724315-CDS-P-littoralis_Contig1:1631828..16319241680789322.6724315-CDS-P-littoralis_Contig1:1631828..1631924Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1631829..1631924 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.378.1

>prot_P-littoralis_Contig1.378.1 ID=prot_P-littoralis_Contig1.378.1|Name=mRNA_P-littoralis_Contig1.378.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=363bp
MVTAPLPVPSAPEGHAGAHSVTLRFLPPHDHGGSPVSWYHVMSRPTGENV
LSKWQAVGMAAAPAPKLNVAVHDTEPQSVAVKVEHLVPGVAYQFQVCAQN
DIGTSPWSAPSDPVMVLAAAVDQTNGNGVSMSGFHPGHKHLRLPNVTDVS
VSYAGEAQPPPGEGFDPFEREVHGPTLILDDREGQVRMDSNSSTFEIIDV
WTCHYSPQSFRVKAELVVAQPTDARGGLVNGRFVRNRLVMVERGDIPIVH
KVLDAQRAGALGVIVADDGRCGNSFGQLCVHGSDPPEGWAALDMPRPWLQ
VRVPVVLMLREDAERLAVAAGAAAEEVEAMAWSSLYDGWLDSMGSSSSAS
VGGENWRASAMR*
back to top

mRNA from alignment at P-littoralis_Contig1:1628886..1631999-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.378.1 ID=mRNA_P-littoralis_Contig1.378.1|Name=mRNA_P-littoralis_Contig1.378.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3114bp|location=Sequence derived from alignment at P-littoralis_Contig1:1628886..1631999- (Pylaiella littoralis U1_48)
AGGTTCTCGGTTTGTATCGTCTACGGAGAAACCACCGGCCCATTCTCCGA ATACTCCAAGCCCGCGCGGACGGCTATGGTAACGGCCCCGCTGCCCGTGC CGAGTGCGCCAGAGGGGCATGCAGGGGCGCACTCGGTGACGCTCCGCTTC CTGCCACCTCACGACCATGGGGTGAGAGCAATAATCAGTAGAGGGTAGGA CTCGTTGTTATTCACGACTGCTGACCTTTTGGCATATTGAGCGAATGTCT AGCAGGGAAGCGGAAAAAGCCTCTTTGGGCAATGGTTTAAATACCTAGTG GTTGTTCCATTGTTTTTTCTGGCTCTCGAACACTCTTAACTGTATGCGGA TTCTGGTTGGTAAGCGGTCAGGTCGGGCAAAATCAAGGGAGGCGGGGGGT CGGTCGGTGAGTCGGCCGATCGCTTGGTCCATCGGGGAGTGTTTCGTATT CTTAGTGTGTGTTCCGAGGTGGTACGGAAAGAAGATTCAATGACCGCGAG CCTTCAAGAGTTCACGCTCGCCTTCTTGTTCTTCGGAGAAGTGCTGCTGG GTGGTGCCGGTATGCTTGTACCTGCCTGTATCCCAGACTCGCATTGTGTT TGTTTTCCTGACGACCCTGGATATATTTGTAGCGAAAAAAGCACGCGCCA GGACCTGCAACACACAGTACGCTTTTCTCGTCCACAGCAGGCACCACAGT TTATTCATCCCCCCTCCAACAGGAACAAACCTGTGGCATCTTCCCAAAGA GCACCCCTCCCCCCTCCCCCTAACACAAACCACCAAAATACGTATGATAC GTACGAGACTAGGGGTCTCCAGTGTCGTGGTATCACGTCATGTCGCGGCC AACCGGAGAAAATGTGCTGAGCAAGTGGCAGGCGGTGGGCATGGCGGCTG CACCGGCGCCGAAGCTAAACGTCGCCGTCCACGACACTGAGCCGCAATCT GTGGCGGTGAAGGTGGAACACCTCGTGCCCGGGGTAGCTTACCAGTTTCA AGTTTGCGCTCAGAACGATATTGGGTGAGTAAAAGTTTATCGAGCACAGT GTATGCAATAGTTTAAACGATGCCGACTGTCTGCTGTCTTTAAGTGCAGT GTTCTTTCTACAGTATTGGTTTCGTCGAGTGTTGCTTCGCAGGATGATTA TCCCAACTATTTCTCCCCCACCAAATAAAAGTGAGTTGAGAACTCTTAAG GTGAAACAGTCGCTTCTCGCATGTGGTGCAGGGCGTCGAATACTGTTAGA TGGCGGGAAGTGACGTATTGCGGATACTAGACAGGACGACCACAAACATC CTTCCATCCTAGGGCTGTTTGGAAAACAATCCCCGGCGCATTGATCTCGT GTCACCCCCTATAAACAACAGGACCTCTCCCTGGAGTGCTCCATCTGACC CTGTCATGGTTCTCGCGGCCGCGGTGGATCAAACCAACGGTAATGGTGTC TCCATGAGCGGGTTCCACCCTGGTCACAAACATCTCCGTCTCCCAAACGT CACCGACGGTGGGTAAAATGCACCCGACGGCATTTTCATTTTATCTCCAT TTCTATTTCGCTGTGTTGTTTTCGTAGCGATGGTGTTGGTGAGAGAACGA ACAGGAAAAAAACCCTAGACCACGTCCGAAACCTCACTCAGTCTTGGTGC CCGTGAGCTATACCGGAAGGACTGAAAGGGTTAGGCCGACGCCTCTCCCC CTTCCATCCGTAAGGTCAACCTGTCCTTCCCTGCCCCCCCCCCTCCCATC CTTGCCTGCATTGAACTGTACTCTTTGTAACCGAACCACAGTGTCGGTGA GCTACGCTGGAGAGGCGCAGCCGCCGCCGGGAGAGGGGTTCGATCCCTTC GAGAGGGAGGTGCATGGCCCGACACTTATCCTCGACGATCGAGAAGGCCA AGTCCGCATGGATAGCAACAGCTCCACGTTTGAAATAATTGATGTGTGGA CCTGCCACTATAGGTAAGCAAGGTTCTGCCGAGTCAAGTGTTGTGGCATC AAACCACGTAAGGCACCCTGGGCTGAAGGGACTATAGTTTGAACTTTCCA TGAACTAGCGCCAGCGACGAGTCACATCGTATTCTCACAGAAATTCTCCA GCGTTTGCCGGGATCCACACCCTTCCCCTCCGCACCCATGACGAACGCTC GAAAATCATGCCCAGATATCCTCCCCGTGCCCTTGTTAGCCCCCAGTCGT TCAGGGTCAAGGCCGAGTTAGTCGTGGCACAGCCGACTGACGCGCGCGGC GGCCTGGTGAATGGACGGTTCGTTAGGAATCGGCTGGTCATGGTGGAACG AGGAGACATACCGATCGTTCACAAGGTGAAAATCACCTGCAAAGGGAACC GAATCATAAATACCTGTAGGCTGTGTTCTTCGTCCATAAAGCTGTAAACG TGTATATCATCCATATCGACCGTCTACACTTGAGGTGGGGCAGTTACGAT CTTGTAATTTTGACTTGAGGTTTGTCTATCCCATGTATTCTCGGTATACA TGGCATTTTCTCTCTCCTACATTCGCAATCGGAGAGCCGAGGTGACATAG AGGGTGTATTTGAACACCAACAATCGCCGCTTCCAAATGAACATCTGCGC GCTGCCATGGTAGTGCAGTGTGTACGCCGCGCTCCTTCACCATTCGACTG CAAAGGGATTAAGACTTTATCGAACAAAACCAAAACGAGTCAAAGCACAA CTGAACACCTGGGGCACAAACACAAAAAACTCAAGGTACTCGACGCGCAA CGCGCCGGAGCTCTCGGAGTGATCGTGGCCGACGACGGGAGGTGCGGGAA TAGCTTCGGACAGCTCTGCGTGCACGGCAGCGACCCGCCCGAGGGCTGGG CGGCGCTCGATATGCCCCGCCCGTGGCTACAGGTCCGAGTGCCAGTTGTC CTCATGCTTCGCGAGGACGCGGAGAGGTTGGCCGTGGCGGCCGGGGCGGC AGCAGAGGAGGTCGAAGCTATGGCGTGGAGTTCTTTGTACGATGGATGGC TTGATTCTATGGGCTCTTCGTCGTCAGCTTCGGTAGGGGGCGAGAATTGG AGGGCGAGCGCAATGCGGTGATGCATTGATGTGATTTTTTTTCTGCAAGT TCGCTGGACCGGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1:1628886..1631999-

>mRNA_P-littoralis_Contig1.378.1 ID=mRNA_P-littoralis_Contig1.378.1|Name=mRNA_P-littoralis_Contig1.378.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1089bp|location=Sequence derived from alignment at P-littoralis_Contig1:1628886..1631999- (Pylaiella littoralis U1_48)
ATGGTAACGGCCCCGCTGCCCGTGCCGAGTGCGCCAGAGGGGCATGCAGG
GGCGCACTCGGTGACGCTCCGCTTCCTGCCACCTCACGACCATGGGGGGT
CTCCAGTGTCGTGGTATCACGTCATGTCGCGGCCAACCGGAGAAAATGTG
CTGAGCAAGTGGCAGGCGGTGGGCATGGCGGCTGCACCGGCGCCGAAGCT
AAACGTCGCCGTCCACGACACTGAGCCGCAATCTGTGGCGGTGAAGGTGG
AACACCTCGTGCCCGGGGTAGCTTACCAGTTTCAAGTTTGCGCTCAGAAC
GATATTGGGACCTCTCCCTGGAGTGCTCCATCTGACCCTGTCATGGTTCT
CGCGGCCGCGGTGGATCAAACCAACGGTAATGGTGTCTCCATGAGCGGGT
TCCACCCTGGTCACAAACATCTCCGTCTCCCAAACGTCACCGACGTGTCG
GTGAGCTACGCTGGAGAGGCGCAGCCGCCGCCGGGAGAGGGGTTCGATCC
CTTCGAGAGGGAGGTGCATGGCCCGACACTTATCCTCGACGATCGAGAAG
GCCAAGTCCGCATGGATAGCAACAGCTCCACGTTTGAAATAATTGATGTG
TGGACCTGCCACTATAGCCCCCAGTCGTTCAGGGTCAAGGCCGAGTTAGT
CGTGGCACAGCCGACTGACGCGCGCGGCGGCCTGGTGAATGGACGGTTCG
TTAGGAATCGGCTGGTCATGGTGGAACGAGGAGACATACCGATCGTTCAC
AAGGTACTCGACGCGCAACGCGCCGGAGCTCTCGGAGTGATCGTGGCCGA
CGACGGGAGGTGCGGGAATAGCTTCGGACAGCTCTGCGTGCACGGCAGCG
ACCCGCCCGAGGGCTGGGCGGCGCTCGATATGCCCCGCCCGTGGCTACAG
GTCCGAGTGCCAGTTGTCCTCATGCTTCGCGAGGACGCGGAGAGGTTGGC
CGTGGCGGCCGGGGCGGCAGCAGAGGAGGTCGAAGCTATGGCGTGGAGTT
CTTTGTACGATGGATGGCTTGATTCTATGGGCTCTTCGTCGTCAGCTTCG
GTAGGGGGCGAGAATTGGAGGGCGAGCGCAATGCGGTGA
back to top