mRNA_P-littoralis_Contig1.313.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.313.1
Unique NamemRNA_P-littoralis_Contig1.313.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1.313.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 6.710e-30
Identity = 60/133 (45.11%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNKS-GSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTL 393
            GKEK R+T+ LAV GD +KV  R I+KG P +       G A +P KNS+++E LP+ R+  GYP GG+S GVQ+ SWCD  +   W+   +  RP + S   QRP +LVLDDF+CH+++ F  +L   A T+
Sbjct:   87 GKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTI 219          
BLAST of mRNA_P-littoralis_Contig1.313.1 vs. uniprot
Match: A0A6H5L4U1_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4U1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 6.540e-29
Identity = 61/133 (45.86%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTL 393
            GKEK R+T+VLAV  DG+KV PRII+KG PF+  T +  G +  P KNS+++E  P  R    +PA G+S GVQ  SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+
Sbjct:   10 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEIHPANRAKHAHPANGMSFGVQGKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTI 142          
BLAST of mRNA_P-littoralis_Contig1.313.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.380e-28
Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTL 393
            GKEK R+T+VLAV  DG+KV PRII+KG PF   T +  G +  P KNS+++E  P  R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+
Sbjct:  149 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTI 281          
BLAST of mRNA_P-littoralis_Contig1.313.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.940e-27
Identity = 64/134 (47.76%), Postives = 84/134 (62.69%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTL 393
            GKEK R+T+ LAV  DG+KV  RII+KG PFV   T   G A +P KNS+++E LP  R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+
Sbjct:  303 GKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTI 435          
BLAST of mRNA_P-littoralis_Contig1.313.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.230e-27
Identity = 59/133 (44.36%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTL 393
            GKEK R+T+VLAV  DG+KV PRII+KG PF+    +  G +  P KNS+++E  P  R    +PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+
Sbjct:  149 GKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTI 281          
BLAST of mRNA_P-littoralis_Contig1.313.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 2.620e-27
Identity = 64/134 (47.76%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTL 393
            GKEK R+T+ LAV  DG KV  RII+KG PFV   T   G A +P KNS+++E LP  R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+
Sbjct:  262 GKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTI 394          
BLAST of mRNA_P-littoralis_Contig1.313.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 4.520e-27
Identity = 59/133 (44.36%), Postives = 84/133 (63.16%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTL 393
            G EK R+T+VLAV  DG+KV PRII++G PF+  T +  G + +P KN +++E  P  R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+
Sbjct:  344 GNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTI 476          
BLAST of mRNA_P-littoralis_Contig1.313.1 vs. uniprot
Match: A0A6H5KEE8_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE8_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 3.430e-26
Identity = 63/134 (47.01%), Postives = 83/134 (61.94%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVG-GTNKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTL 393
            GKEK R+T+ LAV  DG+KV  RII+KG PFV   T   G A +P KNS+++E LP  R+  G P  G+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+
Sbjct:  274 GKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVEGMSFGVQEKSWCDLRECKLWIKGSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTI 406          
BLAST of mRNA_P-littoralis_Contig1.313.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 3.680e-26
Identity = 59/133 (44.36%), Postives = 83/133 (62.41%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTL 393
            G+EK R+T+VLAV  DG+KV  RII+ G PF+  T +  G +  P KNS+++E  P  R   G+PA G+S GVQ+ SW D  + + W +  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+
Sbjct:   83 GEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTI 215          
BLAST of mRNA_P-littoralis_Contig1.313.1 vs. uniprot
Match: A0A6H5KT06_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT06_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.210e-26
Identity = 58/133 (43.61%), Postives = 82/133 (61.65%), Query Frame = 1
Query:    1 GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGT-NKSGSAKKPGKNSLSYEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTL 393
            GKE+ R+ +VLAV  DG+KV PRI +KG PF   T +  G +  P KNS+++E  P  R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+ H++E F   L   A T+
Sbjct:   30 GKEQERFALVLAVMADGKKVSPRITFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGVSFGVQEKSWSDQRECNGWISGRWKLRPNNGSIVQQRPCILVLDDFKRHKDEGFIAALKRDANTI 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI6.710e-3045.11DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5L4U1_9PHAE6.540e-2945.86DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.380e-2846.62DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE1.940e-2747.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK2_9PHAE2.230e-2744.36DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KE45_9PHAE2.620e-2747.76DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE4.520e-2744.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEE8_9PHAE3.430e-2647.01DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE3.680e-2644.36DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KT06_9PHAE5.210e-2643.61DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1444392..1444785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size395
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.1e-30
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size393
COG categoryCH
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789320.7359905-CDS-P-littoralis_Contig1:1444392..14447851680789320.7359905-CDS-P-littoralis_Contig1:1444392..1444785Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1444393..1444785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.313.1prot_P-littoralis_Contig1.313.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1444393..1444785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.313.1

>prot_P-littoralis_Contig1.313.1 ID=prot_P-littoralis_Contig1.313.1|Name=mRNA_P-littoralis_Contig1.313.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=131bp
GKEKLRYTVVLAVRGDGQKVRPRIIYKGNPFVGGTNKSGSAKKPGKNSLS
YEHLPDKRTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR
DQRPSVLVLDDFRCHREERFQKKLMDLAKTL
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mRNA from alignment at P-littoralis_Contig1:1444392..1444785-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.313.1 ID=mRNA_P-littoralis_Contig1.313.1|Name=mRNA_P-littoralis_Contig1.313.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=394bp|location=Sequence derived from alignment at P-littoralis_Contig1:1444392..1444785- (Pylaiella littoralis U1_48)
GGCAAGGAGAAGCTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGG ACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGAACCCTTTTGTCGGGG GTACCAACAAGTCAGGCTCAGCCAAGAAGCCTGGCAAGAACAGCCTGTCG TACGAGCACCTCCCAGACAAGCGGACGAGCTTCGGCTACCCGGCTGGCGG CATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGGCACCCAGTCCG ACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCAGGGTCTACCTCCAGA GATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGGTGCCACCGGGA AGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGACGCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1444392..1444785-

>mRNA_P-littoralis_Contig1.313.1 ID=mRNA_P-littoralis_Contig1.313.1|Name=mRNA_P-littoralis_Contig1.313.1|organism=Pylaiella littoralis U1_48|type=CDS|length=393bp|location=Sequence derived from alignment at P-littoralis_Contig1:1444392..1444785- (Pylaiella littoralis U1_48)
GGCAAGGAGAAGCTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGG
ACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGAACCCTTTTGTCGGGG
GTACCAACAAGTCAGGCTCAGCCAAGAAGCCTGGCAAGAACAGCCTGTCG
TACGAGCACCTCCCAGACAAGCGGACGAGCTTCGGCTACCCGGCTGGCGG
CATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGGCACCCAGTCCG
ACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCAGGGTCTACCTCCAGA
GATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGGTGCCACCGGGA
AGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGACGCTG
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