mRNA_P-littoralis_Contig1.270.3 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1.270.3 vs. uniprot
Match: D7FT40_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT40_ECTSI) HSP 1 Score: 400 bits (1027), Expect = 8.660e-124 Identity = 438/685 (63.94%), Postives = 456/685 (66.57%), Query Frame = 3
Query: 285 MSSKLDYLKKYGTPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGLRII-DDEAGMTTLDNKKVDKAWEGEETEEEKPALVLDDPDAGKKTQSGSWTTVGVASTSTAE-NDGEDVSPPRRRRR-HDSSDGXXXXXXXXXXXXXXXXXXNGVRRGGGDNTGGAGDXXXXXXXXXXXXXDEEDXXXXXXXXXXXXXXXXXXXXXXXQHQSQRPGATTPV-------------DGDGDTSPPGR---------------------------------RARADDDSRGGGRDGDRRS-DHGDERGTGRRSSRMEDASPPRRQLPSGGRGDRDGDSXXXXRGGTGARGSSSRHNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDPIPLARGKEARGDASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDDRVKTSSGYYAGLQSGKDFKVVEQNMKRKHEAEMKGADQSNSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKEQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKVKERVKSGKPLKPEYKGPQPKPNRFGIRPGYRWDGNDRGNGWEARIVAKGVDNNYKAELAYKWATADM 2189
MSSKLDYLKKYG PGG XXXXXXXXXXXXXXXXXXXXXXXXXXX DDEAGMTTLD K+V+KAWE EETEEEKPALV+DDPD G K QSGSWTTVGV +T NDGED+S HDSS+ XXXXXXXXXX R GG + G GD XXXXXXXXXX XXXXXXXXXX XXXXXXXXX +G G S R R R D R GGR+ R+ D G +G EDASPP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R R D+S XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GD RVKTSSGYYAGLQSGKDFKVVEQN+KRKH+AEMKGAD+S+SGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAK+QFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKK KE VKSGKPLKPEYKGPQPKPNRFGIRPGYRWDGNDRGNGWE+RIVAKGVDNNYKAELAYKWATADM
Sbjct: 1 MSSKLDYLKKYGMPGGEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDEAGMTTLDRKRVNKAWEEEETEEEKPALVIDDPDVGMKAQSGSWTTVGVGATGNGGGNDGEDMSXXXXXXXXHDSSEXXXXXXXXXXXP----------RNGGRSDPGDDGDASPXXXXXXXXXXXXXXXXXXXXXXXXDGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKNGGGGRSRSSREXXXXXXXXXPXXXGESRENXXXXXXXXXXXXXRGRRDAGYRSGGRNERRQGGDSGRSKGX---XXEGEDASPP----------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRPRERHDSSSGSDGSVPRGRTGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHDSPEEDGKAG---GDGRVKTSSGYYAGLQSGKDFKVVEQNLKRKHDAEMKGADKSSSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKDQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKAKEGVKSGKPLKPEYKGPQPKPNRFGIRPGYRWDGNDRGNGWESRIVAKGVDNNYKAELAYKWATADM 629
BLAST of mRNA_P-littoralis_Contig1.270.3 vs. uniprot
Match: A0A6H5KM91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM91_9PHAE) HSP 1 Score: 328 bits (840), Expect = 7.840e-97 Identity = 372/668 (55.69%), Postives = 389/668 (58.23%), Query Frame = 3
Query: 285 MSSKLDYLKKYGTPGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDG-LRIIDDEAGMTTLDNKKVDKAWEGEETEEEKPALVLDDPDAGKKTQSGSWTTVGVASTSTAEN-DGEDVSPPRR-RRRHDSSDGXXXXXXXXXXXXXXXXXXNGVRRGGGDNTGGAGDXXXXXXXXXXXXXDEEDXXXXXXXXXXXXXXXXXXXXXXXQHQSQRPGATTPVDGDG--------------------------------------------DTSPPGRR-----ARADDDSRGGGRDGDRRSDHGDERGTGRRSSR-MEDASPPRRQ-----------------LPSGGRGDRDGDSXXXXRGGTGARGSSSRHNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVDPIPLARGKEARGDASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGDDRVKTSSGYYAGLQSGKDFKVVEQNMKRKHEAEMKGADQSNSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKEQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKVKERVKSGKPLKPEYKGPQPKPNRFGIRPGY 2078
MSSKLDYLKKYG PGG XXXXXXXXXXXXXXXXXXXXXXXXXXX LRIIDDEAGMTTLD K+V+KAWE EETEEEKPALVLDDPD G K QSGSWTTVGV +T D ED+SPPRR R+RHDSSD NG RGG + G G XXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXX D SP R+ A A G +RS+R EDASPPRR G RG RD G R +R +P R A G XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GD RVKTSSGYYAGLQSGKDFKVVEQN+KRKH+AEMKGAD+ +SGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAK+QFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKK KERVKSGKPLKPEYKGPQPKPNR P +
Sbjct: 1 MSSKLDYLKKYGMPGGEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRIIDDEAGMTTLDRKRVNKAWEEEETEEEKPALVLDDPDVGVKAQSGSWTTVGVGATGNGGGTDREDMSPPRRQRKRHDSSD------DGCDASPPRRNPRNG--RGGRTDPGDDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEDASPLRRKNPVAAAAA---------------------GRRKRSTREAEDASPPRRPSRGGESLXXXXXXXXXXXXGGDRGRRD----------AGYRSEGRNEHRHGGSGRRSREENIKDGDASPPRRTRRAGERHDSSSGSDGSVPRERAGAAAG-----------------------WRGRDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSPEEDVKAGGDGRVKTSSGYYAGLQSGKDFKVVEQNLKRKHDAEMKGADKRSSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKDQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKAKERVKSGKPLKPEYKGPQPKPNRHVWHPAW 606
BLAST of mRNA_P-littoralis_Contig1.270.3 vs. uniprot
Match: A0A7S2BP57_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BP57_9STRA) HSP 1 Score: 199 bits (507), Expect = 2.890e-55 Identity = 106/179 (59.22%), Postives = 131/179 (73.18%), Query Frame = 3
Query: 1659 EMKGADQSNSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKEQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKVKERVK--SGKPLKPEYKGPQPKPNRFGIRPGYRWDGNDRGNGWEARIVAKGVDNNYKAELAYKWATADM 2189
+ K AD+S + ET+YRDKKGRKLDMLNEFM+ Q R GK+VEE EQ WG+G VQK+EEK +EEL NIA EPFARTV+D +++ + +I ADDPMAAYM KK+ KE VK +GKP KP YKGP+PKPNRFGI PGYRWDG DRG GWE ++ A + + Y+W+T+DM
Sbjct: 10 QQKEADKSLGDKQEETIYRDKKGRKLDMLNEFMRQQAIREGKEVEEKAEQEEWGKGTVQKQEEKAHQEELANIANEPFARTVNDPKVDAMYREKIHADDPMAAYMMKKREKEGVKGKNGKPAKPFYKGPKPKPNRFGIPPGYRWDGVDRGTGWEDKVYAYQANKGVNKQAEYEWSTSDM 188
BLAST of mRNA_P-littoralis_Contig1.270.3 vs. uniprot
Match: A0A835ZAF7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAF7_9STRA) HSP 1 Score: 197 bits (500), Expect = 1.250e-54 Identity = 101/167 (60.48%), Postives = 128/167 (76.65%), Query Frame = 3
Query: 1689 GQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKEQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKVKERVKSGKPLKPEYKGPQPKPNRFGIRPGYRWDGNDRGNGWEARIVAKGVDNNYKAELAYKWATADM 2189
GQ AETVYRD++GRKLDML+EFM+ QDAR G E+A ++ WGRGKVQKE++++ ++ELENI PFART + L+E KA++R+DDPMAAYMAKK+ K SGKPLKP YKGP PKPNRFGI PGYRWDG DRG+GWE ++V + +K E +Y++ ADM
Sbjct: 1 GQTAETVYRDRRGRKLDMLSEFMRQQDAREGAVREKADAEYEWGRGKVQKEDKERQRDELENIKLAPFARTAE--HLDEELKAQLRSDDPMAAYMAKKQAKTAAASGKPLKPVYKGPPPKPNRFGILPGYRWDGVDRGSGWEQKLVDAQLARRHKGEASYQYGCADM 165
BLAST of mRNA_P-littoralis_Contig1.270.3 vs. uniprot
Match: A0A7S4D5S3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5S3_HETAK) HSP 1 Score: 188 bits (478), Expect = 8.160e-50 Identity = 105/209 (50.24%), Postives = 134/209 (64.11%), Query Frame = 3
Query: 1566 RVKTSSGYYAGLQSGKDFKVVEQNMKRKHEAEMKGADQSNSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKEQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKVKERVKSGKPLKPEYKGPQPKP-NRFGIRPGYRWDGNDRGNGWEARIVAKGVDNNYKAELAYKWATADM 2189
R K SSG+ +GLQSG +FK +EQ ++ AE+ GAD+ SG+ A TVYRDK+GRKLDML +FM+ Q+A+ GKK E +EQF WGRG VQK E+ ++EEL I A+PFAR DD +L +A K EI ADDPMAAYM NR+G+RPGYRWDG+DRGNG+EAR++ K D E Y W+ +DM
Sbjct: 93 RQKMSSGHASGLQSGAEFKEIEQQVRAARAAELAGADEEVSGRNAGTVYRDKRGRKLDMLTQFMEQQEAKDGKKKREEQEQFEWGRGAVQKRRERDFQEELREIQAQPFARYRDDEKLNQAAKEEIHADDPMAAYMLXXXXXXXXXXXXXXXXXXXXXXXXXXNRYGLRPGYRWDGHDRGNGFEARVLGKAADRQVFNERKYNWSVSDM 301
BLAST of mRNA_P-littoralis_Contig1.270.3 vs. uniprot
Match: A0A6V1PRD0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1PRD0_HETAK) HSP 1 Score: 188 bits (478), Expect = 1.890e-48 Identity = 105/209 (50.24%), Postives = 134/209 (64.11%), Query Frame = 3
Query: 1566 RVKTSSGYYAGLQSGKDFKVVEQNMKRKHEAEMKGADQSNSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKEQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKVKERVKSGKPLKPEYKGPQPKP-NRFGIRPGYRWDGNDRGNGWEARIVAKGVDNNYKAELAYKWATADM 2189
R K SSG+ +GLQSG +FK +EQ ++ AE+ GAD+ SG+ A TVYRDK+GRKLDML +FM+ Q+A+ GKK E +EQF WGRG VQK E+ ++EEL I A+PFAR DD +L +A K EI ADDPMAAYM NR+G+RPGYRWDG+DRGNG+EAR++ K D E Y W+ +DM
Sbjct: 214 RQKMSSGHASGLQSGAEFKEIEQQVRAARAAELAGADEEVSGRNAGTVYRDKRGRKLDMLTQFMEQQEAKDGKKKREEQEQFEWGRGAVQKRRERDFQEELREIQAQPFARYRDDEKLNQAAKEEIHADDPMAAYMLXXXXXXXXXXXXXXXXXXXXXXXXXXNRYGLRPGYRWDGHDRGNGFEARVLGKAADRQVFNERKYNWSVSDM 422
BLAST of mRNA_P-littoralis_Contig1.270.3 vs. uniprot
Match: W7TD64_9STRA (Bud13 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TD64_9STRA) HSP 1 Score: 182 bits (461), Expect = 1.030e-46 Identity = 108/215 (50.23%), Postives = 142/215 (66.05%), Query Frame = 3
Query: 1560 DDRVKTSSGYYAGLQSGKDFKVVEQNMKRKHEAEMKGA-DQSNSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKEQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKK----VKERVKSGKPLKPEYKGPQPKPNRFGIRPGYRWDGNDRGNGWEARIVAKGVDNNYKAELAYKWATADM 2189
+D +KT + + A L++ KD + A +GA D +GQ AETV RD++GRKL+ML+EF+ + + GK +EAKE++ WGRGKVQKE+++ + ELE+I PFAR D +LE ARK EIRADDPMAAYM +K+ +E +SGK LKPEYKGP PKPNRF IRPGYRWDG DRGNG+EAR + + K E W +D+
Sbjct: 166 EDGLKTGAEFRAELEAQKDAEA---------HAWAEGAKDAGVTGQHAETVVRDRRGRKLEMLSEFLNQEAYKEGKAAKEAKEEYEWGRGKVQKEKDEDHRRELEDIKNAPFARYESDLKLERARKEEIRADDPMAAYMLQKQRDALAQEATRSGKVLKPEYKGPPPKPNRFNIRPGYRWDGIDRGNGFEARWFKRQSELVTKHERDRAWGMSDL 371
BLAST of mRNA_P-littoralis_Contig1.270.3 vs. uniprot
Match: A0A7R9U1Z5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1Z5_9STRA) HSP 1 Score: 174 bits (441), Expect = 6.280e-46 Identity = 97/185 (52.43%), Postives = 125/185 (67.57%), Query Frame = 3
Query: 1578 SSGYYAGLQSGKDFKVVEQNMKRKHEAEMKGADQSNSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKEQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKVKERVKSGKPLKPEYKGPQPKPNRFGIRPGYRWDGNDRGNGWEARIVAK 2132
SSG+ AGL + FK E ++R A++ SG+ +ETVYRD++GRKLDML+EFM+ Q+ + K+ + WG+G QK+ EK+++EELENI EPFAR DD RLE RK E+R DDPM AY+ K +R K+GK K Y GP P PNRFGI PGYRWDG DRGNG+EAR++AK
Sbjct: 27 SSGHRAGLHTADSFKRAEDELRRDKAAKLSRMSDELSGKNSETVYRDRQGRKLDMLSEFMRQQEEKESKRXXXXX-XYEWGKGTKQKKMEKEYEEELENIRNEPFARAHDDPRLERMRKEELRPDDPMLAYVQK----QRAKTGKSTKKAYTGPPPPPNRFGIPPGYRWDGVDRGNGFEARVLAK 206
BLAST of mRNA_P-littoralis_Contig1.270.3 vs. uniprot
Match: A0A7S1GEN6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GEN6_9STRA) HSP 1 Score: 172 bits (437), Expect = 1.370e-45 Identity = 97/199 (48.74%), Postives = 126/199 (63.32%), Query Frame = 3
Query: 1572 KTSSGYYAGLQSGKDFKVVEQNMKRKHEAEMKGADQSNSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKEQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKVKERVKSGKPL-KPEYKGPQPKPNRFGIRPGYRWDGNDRGNGWEARIVAKGVDNNYKAELA 2165
+ ++G AGL G+D K + ++R+ ++ D GQGAETVYRD+KGRKLDML E M+ QD GKKV + E F WG G VQK E + EE+ IA PFART DD + + K++IR DPMAA M +K+ + K G P KP+Y+GP P PNR+GI PGYRWDG DRGNGWE +++A +AE A
Sbjct: 1 RMATGERAGLLKGEDMKAEQLALRRREREKLAAMDAEMMGQGAETVYRDRKGRKLDMLQEMMRQQDLAKGKKVAKEAEAFDWGTGAVQKREVEARAEEMAKIAEAPFARTADDKDMNDYLKSQIREGDPMAAAMMRKQRERAAKEGGPGGKPQYRGPAPPPNRYGIAPGYRWDGVDRGNGWERKLLAYKAGKAARAEKA 199
BLAST of mRNA_P-littoralis_Contig1.270.3 vs. uniprot
Match: A0A7S2HC66_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HC66_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.330e-44 Identity = 89/181 (49.17%), Postives = 123/181 (67.96%), Query Frame = 3
Query: 1659 EMKGADQSNSGQGAETVYRDKKGRKLDMLNEFMKSQDARAGKKVEEAKEQFAWGRGKVQKEEEKQWKEELENIAAEPFARTVDDTRLEEARKAEIRADDPMAAYMAKKKVKERVK----SGKPLKPEYKGPQPKPNRFGIRPGYRWDGNDRGNGWEARIVAKGVDNNYKAELAYKWATADM 2189
E+K A+QS T+ RD++G+KLD LNEFMK+Q AG+K + +EQ WG+G VQK ++K+++ EL NI EPFAR+ +D ++++ + +I +DDPMAAYM KK+ E K +GKP +P YKGP PKPNRF I PGYRWDG DRG GWEA+I+ + AY+W+ A+M
Sbjct: 18 EVKTAEQST------TIVRDRRGKKLDALNEFMKAQAKSAGEKAADDEEQLEWGKGSVQKNQDKEYEAELANIKNEPFARSRNDPKVDQMYRNKIHSDDPMAAYMLKKRAAEADKLSKHAGKPARPVYKGPTPKPNRFNIHPGYRWDGRDRGTGWEAKILDHAAHSGVMKNAAYEWSVAEM 192 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.270.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1.270.3 >prot_P-littoralis_Contig1.270.3 ID=prot_P-littoralis_Contig1.270.3|Name=mRNA_P-littoralis_Contig1.270.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=636bp MSSKLDYLKKYGTPGGGEDGKKKKRRKKTPGAKDAKNSARSGGGGDGLRIback to top mRNA from alignment at P-littoralis_Contig1:1248910..1255976+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1.270.3 ID=mRNA_P-littoralis_Contig1.270.3|Name=mRNA_P-littoralis_Contig1.270.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=7067bp|location=Sequence derived from alignment at P-littoralis_Contig1:1248910..1255976+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1:1248910..1255976+ >mRNA_P-littoralis_Contig1.270.3 ID=mRNA_P-littoralis_Contig1.270.3|Name=mRNA_P-littoralis_Contig1.270.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1908bp|location=Sequence derived from alignment at P-littoralis_Contig1:1248910..1255976+ (Pylaiella littoralis U1_48)back to top |