mRNA_P-littoralis_Contig1.223.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.223.1
Unique NamemRNA_P-littoralis_Contig1.223.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.223.1 vs. uniprot
Match: A0A6H5JXG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG7_9PHAE)

HSP 1 Score: 319 bits (818), Expect = 4.050e-101
Identity = 198/366 (54.10%), Postives = 227/366 (62.02%), Query Frame = 2 
Query:  206 AAAAVVALTLLGSPLPTSSFVPAASRVQMPFYSSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSYRGAAEGVAAP----------LSVGGLDDMD-IDPLEAGPDPDAILLQGEPELLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIASM--GKGGGAEDVTMASLKASKKKTG-RTRVDPLMPKGGVPPNDWGEMGDLAEGVRGILVVCHSGLPRDKRRATEVMQAVRDRYGHLIHTHEWWDDDPELTEDDREEVGTFEVWLEGPTVVHYHERADGKMELDNVQLAKILDDLECRVVDEAILGQYVYEDFQFRLPGFRAAEQRRKQFP 1261
            A+ AVVA TLLGS LPTSSFVP ASR Q P  SSR                                                        G  E V+ P          L +GG+D+MD IDPLE GPDPD ILLQGEPELLRQ  XXXXX                            XX +AS   G+G GA++V MA+L   +KK   + RVDPLMP+GGV PN+W +M +LAEGVRGILVVCH+GLP+DK+RATEVM AV++RYGH+IHTHEWWDDD ELT+DDRE+ GTFEVWLEGPTVVHYHERADGK++LD+ QL KILDDLE RV+DEAILGQY+ EDFQFRLPGF   EQR KQFP
Sbjct:   10 ASIAVVAFTLLGSLLPTSSFVPLASRGQAPRQSSRRPPPSSSRFAGPLQMTMPAPRQRQQRRQIFMPAGASSTLAGHQRRRTPS-------GGREEVSLPRPRRCRSLQPLGLGGMDEMDDIDPLEGGPDPDEILLQGEPELLRQQQXXXXXEAELAAAEAATVAAGKGPTKAELAEAAVXXXMASKTAGEGVGADEVAMAALGPKRKKRAEKVRVDPLMPRGGVAPNEWLDMANLAEGVRGILVVCHTGLPKDKKRATEVMNAVKERYGHVIHTHEWWDDDEELTDDDREDAGTFEVWLEGPTVVHYHERADGKLDLDDEQLDKILDDLEERVMDEAILGQYINEDFQFRLPGFTVPEQRFKQFP 368
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BLAST of mRNA_P-littoralis_Contig1.223.1 vs. uniprot
Match: D7G5D7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D7_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 5.010e-94
Identity = 158/253 (62.45%), Postives = 186/253 (73.52%), Query Frame = 2 
Query:  521 LDDM-DIDPLEAGPDPDAILLQGEPELLRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIASMG--KGGGAEDVTMASLKASKKK-TGRTRVDPLMPKGGVPPNDWGEMGDLAEGVRGILVVCHSGLPRDKRRATEVMQAVRDRYGHLIHTHEWWDDDPELTEDDREEVGTFEVWLEGPTVVHYHERADGKMELDNVQLAKILDDLECRVVDEAILGQYVYEDFQFRLPGFRAAEQRRKQFPEL 1267
            +D+M D+DPLEAGPDPD ILLQGEPELLRQ                                XXXXX        +GGGA++  MA+L   +KK   + R+DPLMP+GGV PN+W +M DLAEGVRGILVVCH+GLP+DK+RA E+M AV++RYGH+IHTHEWWDDD ELT+DDRE+ GTFEVWLEGPT+VHYHERADGK++LD+ QL KILDDLE RV+DEAILGQY+ EDFQFRLPGF   EQR KQFP L
Sbjct:    1 MDEMEDMDPLEAGPDPDEILLQGEPELLRQQQEEEDYEVELAAAEAATVAAGKAPTKAELAEXXXXXXXXXXXXREGGGADEAAMAALGPKRKKRVEKARIDPLMPRGGVAPNEWLDMADLAEGVRGILVVCHTGLPKDKKRAAEIMNAVKERYGHVIHTHEWWDDDEELTDDDREDAGTFEVWLEGPTIVHYHERADGKLDLDDEQLDKILDDLEERVMDEAILGQYINEDFQFRLPGFTVPEQRFKQFPVL 253
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JXG7_9PHAE4.050e-10154.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5D7_ECTSI5.010e-9462.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1101139..1105791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1642
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_008690.1
Cds size1098
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.223.1prot_P-littoralis_Contig1.223.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1101511..1105619 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789317.153915-UTR-P-littoralis_Contig1:1101138..11015101680789317.153915-UTR-P-littoralis_Contig1:1101138..1101510Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1101139..1101510 -
1680789317.2190237-UTR-P-littoralis_Contig1:1105619..11057911680789317.2190237-UTR-P-littoralis_Contig1:1105619..1105791Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1105620..1105791 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789317.165791-CDS-P-littoralis_Contig1:1101510..11017951680789317.165791-CDS-P-littoralis_Contig1:1101510..1101795Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1101511..1101795 -
1680789317.178998-CDS-P-littoralis_Contig1:1102573..11026631680789317.178998-CDS-P-littoralis_Contig1:1102573..1102663Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1102574..1102663 -
1680789317.1896832-CDS-P-littoralis_Contig1:1103845..11040641680789317.1896832-CDS-P-littoralis_Contig1:1103845..1104064Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1103846..1104064 -
1680789317.1994-CDS-P-littoralis_Contig1:1104321..11047081680789317.1994-CDS-P-littoralis_Contig1:1104321..1104708Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1104322..1104708 -
1680789317.2106097-CDS-P-littoralis_Contig1:1105502..11056191680789317.2106097-CDS-P-littoralis_Contig1:1105502..1105619Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1105503..1105619 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.223.1

>prot_P-littoralis_Contig1.223.1 ID=prot_P-littoralis_Contig1.223.1|Name=mRNA_P-littoralis_Contig1.223.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=366bp
MTPKNAVSGAVAAAAVVALTLLGSPLPTSSFVPAASRVQMPFYSSRRPPP
SSSSPLSSSPRMSAATHNRRREQPHSCFLPTTPAGERRHQQRQRRPSSSS
YRGAAEGVAAPLSVGGLDDMDIDPLEAGPDPDAILLQGEPELLRQQQEEE
KYEAEVAARAAATASAKKAPTKKQIAEEAVAAAIASMGKGGGAEDVTMAS
LKASKKKTGRTRVDPLMPKGGVPPNDWGEMGDLAEGVRGILVVCHSGLPR
DKRRATEVMQAVRDRYGHLIHTHEWWDDDPELTEDDREEVGTFEVWLEGP
TVVHYHERADGKMELDNVQLAKILDDLECRVVDEAILGQYVYEDFQFRLP
GFRAAEQRRKQFPEL*
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mRNA from alignment at P-littoralis_Contig1:1101139..1105791-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.223.1 ID=mRNA_P-littoralis_Contig1.223.1|Name=mRNA_P-littoralis_Contig1.223.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4653bp|location=Sequence derived from alignment at P-littoralis_Contig1:1101139..1105791- (Pylaiella littoralis U1_48)
GTGGTACCTGAAACAGCAGCAGGGTTGACGAGGGCTGATAAGTCACGCGT
CATACCTAGCCTGTTTTATCTGCTCGGCACTTCTCACGGCGAACAGGCGA
ACGAAGTGTAGCACGATCGGTACAACTACGGGTATTGTCGGGGCTTCTCT
ACCGTTCAACCTGCGGTCTGCCATGACTCCGAAGAATGCAGTGTCGGGGG
CGGTGGCAGCAGCGGCGGTTGTGGCCTTGACTCTGCTGGGCTCACCCTTG
CCGACATCGAGCTTTGTGCCGGCGGCTTCGCGAGTACAGGTGAGAATAAG
TGAGATACGTTTTAGCTGTGTCTTCAACTGATCACGACGGCGGCGAACCG
ACTCTCTTCGGCTACCGGTACCTGGCTGTCCTTGTGTTCTTGTTCGATGA
TAAAAGAAGACGTCAAACATTCACCCCTGGCCCCTGGCCGGCAAAGAAAC
ATGAACAGGGTCTCATGATAGTTCAAGTATGCTTCTGTTGTCATATCATG
GGAGACTACATCCGTACCCGCTACCTGGTACCTGGTACTCACTCGTACCT
GGTGTGGGATTCCCTCATTCTGTTGGGACCACAGCAACGAAAGCACTGCT
GTAGCTCACTGGTCCAGCACATGTTCGGTTCCGTCAATCCCGAACAGCCA
TGTGCGTGAGGGCTCTGATGGGTTGCGCATATGTACATTGTACAACCGTG
TCTTTGGTTGTTTCCGAGACCCGCCTCACACAACGCTGTACCAGGTGCGT
GATGACCGGGTTTCTGGATATGAGCATTAATTTTGTACTATAAGTGCTGT
CTGTTCGTAAAGAAGTACTTAGTAAACAGCAGACCAGCTGTCAAACCAAC
ATCACTGCTGCAGTCTTCGCCGACGACGAAAGCGAACACTTTGGATTCCA
GGGATGTACCACCTCGCCAATCCAACTCCCAGCACATATGCATCGCCCCA
GGATTTACGGGATGCGAGGGTCTACGGCGGTGTATATAAGGTGCCCCGCG
GCCTGCAGTGAAGGTGAACGACCTGTCCCCTTTGTCTCCACCGCTTGCCC
TCCGTGCTCCCACCCCGTTCTGCCCAACAACAGATGCCTTTCTATTCTAG
CAGACGACCACCACCATCATCTTCGTCGCCTCTCTCGAGCTCTCCTAGGA
TGTCCGCCGCGACTCACAATCGGCGAAGAGAACAGCCGCACTCTTGCTTC
CTCCCGACAACACCGGCGGGCGAAAGGCGACACCAGCAGCGACAACGGCG
CCCATCGTCATCGTCGTACCGCGGCGCCGCGGAGGGGGTTGCAGCGCCGC
TCTCGGTCGGCGGCCTGGACGACATGGACATCGACCCTTTGGAGGCGGGA
CCCGACCCGGACGCGATATTACTGCAGGGGGAGCCGGAACTGCTGAGGCA
GCAGCAGGAGGAAGAGAAGTACGAGGCGGAGGTGGCGGCGAGAGCAGCAG
CAACAGCGTCGGCCAAAAAGGTACTTGAGTATTGAGCCGTTCGATGCACA
TCTCCGTTGGGATCGGCGTCTGTTTGTAGGGGTAAAAATAATGGTTCCTT
GTGGGACCTCTACCGTTATCGTCGTTTCTCCATCGCGAAACCTGGATTTA
ATTTTATGTCTATGTCCATACGATTTTTCACTTTCCGCCTGTCTGTTCTT
TTTCCGGTTACGTTTGCATTTTTGTGATTGTGATTTATTTCCTTTTTTAT
CCTGTCGATGATATGATATGAAAACAGGCACCGACGAAAAAGCAAATAGC
GGAGGAGGCGGTGGCGGCGGCGATCGCCTCGATGGGAAAGGGGGGCGGGG
CCGAAGACGTAACCATGGCGTCGCTCAAGGCCAGTAAGAAAAAGACTGGA
AGGACTAGGGTCGACCCCCTCATGCCCAAGGGCGGGGTACCGCCGAACGA
TTGGGGAGAGATGGGGGACCTTGCGGAGGGTGTCAGAGGAATTCTGGTGA
GGTTGTGTCACTAAAAAAAAAACGGACGTGGAACTCAGAATACTTCTCGG
AGTGGCCAACCACAGCGCAAAAACTCCTGTACAAAGTGAAGGGTTTCGTC
CACTGGGGTTCCCCGTTTTGGTGTACTCGTACGTTCCTCAAAATTATCAT
TTAGTCCAAATGGAGCCGGCTGCGGGTGAGAATGAAGCTTCTGGCGGTGA
GGAAGAAACTTCTGGCGCGAGAAAAGAGCACACAGATACCAACCCCGCCT
CGCGCCGCGCCGACTCATGAGCCCTCTCTCATGAATAAAGTCACGGTGCA
GCAGCAGCAGCAAAAAAATCACCATCACCTCCGTTCGTTTTCAATCACTC
GGCCGGCCGAGAAATAGCCATCTATCATGATGTGCCGTGTGTGTGGTTGT
TATGTGTGTGCGTATATGTGCTGTTGAAAGGCAGCATAATAATAACTTTT
CGCCTGATTTCGGGTTCCATGTTCTCGCTTTTCTTGTGTGTTTTTGGCTT
TGTAGACACCCAACGACACGGAACAGGGAACGTACCACGTGTCATGAATT
TGTTGTTCAGACACGCCCTGAGCATTAAATCATCCATGACCTACATTGCT
GTATGCCTGCCCTCGAGCTGCTTTGCTTTGGCGGGGAAGCGAAGTTTTGT
TCACAATTTTTTCCAAATGGGCGAGAGGACATACGCCGAGCTAGGACCAC
GCGGATTTATAATAATCTCGGCAAGATTTTGTTTTCATGAGAATACAGCT
GCTCCAACTTTAGTTTTTCATCGTACCCTCCCTGGGTGGAGATCGACCGG
CTGTAAATTTCTAAATTTCAAATTTCGCCGCCCAATCTCCCCCCCCCCCC
CCTCCCATTCGTCCCCTCGGTGCGATTCTTAGTGTAGGTGGGTATTTTAG
CACGGTAAAGTGTGTCGCAAAGTCATGAACGACTTGAGTTTTACCTAAAA
CGAGGCCTTCGGAACGGTCCCACGCCGTCGGTACGACCAAGCTGTCGATG
AGAAATGAACACGAAGATACGCAAGCAACTGTATCTTGTGACCTTGGATA
CCGGTCAAGTGTCAGGATGACACACGCACATTGCACCTTCGCTGCTTGAT
TGTCTGGAACTACTGTATTAGCTCGTTGACTGTATAACATGACACTCGAT
CCAAACCCAATGCAAATCCAACTTTCAGGTGGTGTGTCACAGCGGCTTGC
CGAGAGATAAGAGAAGGGCGACGGAGGTCATGCAGGCGGTCAGAGATCGC
TATGGCCACCTCATTCACGTGAGGAAAAGCGCTACCTGTGCGTGTGTCGG
GGTTTTTGTGCGTTTGCTCTTGCTGCATTTGTGTGGGACTCGTTTCGCTC
CTTCAGGACATCCGTCTTTGTTATCCGTTTTGTCATCCTCACCACAGGAA
TAAATCAAAGCCCAAATTCTTTTTTACCAACCGATGTGCGAGAGTCTCCG
TTTTTTTTCGTGCAGTCCGTCCCTTGGAGACGCCTTTCTTCGCGATTCAC
ACTGCTGTTCAATACATGAATTGAAAACGAAACGTTCGAGCGTGTAGGGA
TGACAGCAGGCAGATCGCCGATGTAGACCGTTTTTGAAGCCCGGGCTGAG
GTTTTGCATTGGGGCTGTACTGACATGAGAAAACACAACATGACGATTCC
TGCCAACAGAAGACGTCGAATGTTCTACTCGGATGGAAGAAAGGCCAGAC
GACGGCGAACCAAAATTTCTTGAAAAACAACAGCGACGCGTGCCTTGTCA
ACAATGTACGTTCAATTCGTTCTACCACAAAGCTAAAATCCAGGAAAATA
TATCTCACGCTGTCACACGCAGCAAAAACAACAACGGCAACCACAATTGC
TGTCCCCGCCTATCTCTGACCCTTCCTTGGTATTTGGCGTTGAGTTCATT
TCACCTGTTTGACGTAAGAAAAGAGCGTTGTTGCGGCTAATTTTTGCGAT
GAGCTTAATGCAATGAGAAAAAAAAATAGAACAATGACTCGTACCCTGTC
AGCAAATATACCGTCCAATTTTGTGCATCGAACTCGTTCTTCTCAGACAC
ACGAGTGGTGGGATGACGACCCAGAGCTCACCGAAGATGACCGCGAGGAG
GTGGGCACCTTCGAGGTCTGGCTGGAGGGCCCCACCGTGGTCCACTACCA
CGAGAGGGCCGATGGAAAGATGGAACTGGATAACGTGCAGCTGGCGAAGA
TCCTCGACGACCTCGAGTGCCGCGTGGTCGACGAGGCTATCCTCGGCCAG
TACGTCTACGAAGACTTTCAGTTCAGGCTTCCTGGATTCAGGGCCGCCGA
GCAGAGGCGCAAGCAGTTCCCCGAGCTGTAGAATAGAAGAGAGAGGGGCA
CGTTTTGTCTTGGTTCGGATGTTGTTCCCGCACTTTGTGCTGCAAAACTT
CTGTGGCTCTGTTTTTTGTCCCCTTGTTTAGTTTGTTTTTCGACAGTTGT
GCTGGATGCAAATGGTAATGTTCGAAAAGGAAGCAAGCTGCAAGCTGATC
TGGTGACCGCTGTTGTTGTCTGTGAAAGCTATTGCCCGTATGTACATCAA
CACCAACTGCTGTTGCCGTTGGTAAGCGATTGATTTCTTGCAGATTTTTT
TTTTCAATATTCTTGCTCGTTCGCGAGTTGTTGCGAAAACCGAGTGTTTT
GGTTCAACTATGAAGGGATTTATCATGCTAAATTTACACACGTACCATAC
AAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:1101139..1105791-

>mRNA_P-littoralis_Contig1.223.1 ID=mRNA_P-littoralis_Contig1.223.1|Name=mRNA_P-littoralis_Contig1.223.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1098bp|location=Sequence derived from alignment at P-littoralis_Contig1:1101139..1105791- (Pylaiella littoralis U1_48)
ATGACTCCGAAGAATGCAGTGTCGGGGGCGGTGGCAGCAGCGGCGGTTGT
GGCCTTGACTCTGCTGGGCTCACCCTTGCCGACATCGAGCTTTGTGCCGG
CGGCTTCGCGAGTACAGATGCCTTTCTATTCTAGCAGACGACCACCACCA
TCATCTTCGTCGCCTCTCTCGAGCTCTCCTAGGATGTCCGCCGCGACTCA
CAATCGGCGAAGAGAACAGCCGCACTCTTGCTTCCTCCCGACAACACCGG
CGGGCGAAAGGCGACACCAGCAGCGACAACGGCGCCCATCGTCATCGTCG
TACCGCGGCGCCGCGGAGGGGGTTGCAGCGCCGCTCTCGGTCGGCGGCCT
GGACGACATGGACATCGACCCTTTGGAGGCGGGACCCGACCCGGACGCGA
TATTACTGCAGGGGGAGCCGGAACTGCTGAGGCAGCAGCAGGAGGAAGAG
AAGTACGAGGCGGAGGTGGCGGCGAGAGCAGCAGCAACAGCGTCGGCCAA
AAAGGCACCGACGAAAAAGCAAATAGCGGAGGAGGCGGTGGCGGCGGCGA
TCGCCTCGATGGGAAAGGGGGGCGGGGCCGAAGACGTAACCATGGCGTCG
CTCAAGGCCAGTAAGAAAAAGACTGGAAGGACTAGGGTCGACCCCCTCAT
GCCCAAGGGCGGGGTACCGCCGAACGATTGGGGAGAGATGGGGGACCTTG
CGGAGGGTGTCAGAGGAATTCTGGTGGTGTGTCACAGCGGCTTGCCGAGA
GATAAGAGAAGGGCGACGGAGGTCATGCAGGCGGTCAGAGATCGCTATGG
CCACCTCATTCACACACACGAGTGGTGGGATGACGACCCAGAGCTCACCG
AAGATGACCGCGAGGAGGTGGGCACCTTCGAGGTCTGGCTGGAGGGCCCC
ACCGTGGTCCACTACCACGAGAGGGCCGATGGAAAGATGGAACTGGATAA
CGTGCAGCTGGCGAAGATCCTCGACGACCTCGAGTGCCGCGTGGTCGACG
AGGCTATCCTCGGCCAGTACGTCTACGAAGACTTTCAGTTCAGGCTTCCT
GGATTCAGGGCCGCCGAGCAGAGGCGCAAGCAGTTCCCCGAGCTGTAG
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