mRNA_P-littoralis_Contig1.222.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.222.1
Unique NamemRNA_P-littoralis_Contig1.222.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:1099907..1101088 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size313
Hectar predicted targeting categoryother localisation
Exons2
Cds size183
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789308.1862347-CDS-P-littoralis_Contig1:1099906..10999361680789308.1862347-CDS-P-littoralis_Contig1:1099906..1099936Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1099907..1099936 -
1680789308.1978009-CDS-P-littoralis_Contig1:1100807..11009601680789308.1978009-CDS-P-littoralis_Contig1:1100807..1100960Pylaiella littoralis U1_48CDSP-littoralis_Contig1 1100808..1100960 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789308.2131188-UTR-P-littoralis_Contig1:1100960..11010881680789308.2131188-UTR-P-littoralis_Contig1:1100960..1101088Pylaiella littoralis U1_48UTRP-littoralis_Contig1 1100961..1101088 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.222.1prot_P-littoralis_Contig1.222.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 1099907..1100960 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.222.1

>prot_P-littoralis_Contig1.222.1 ID=prot_P-littoralis_Contig1.222.1|Name=mRNA_P-littoralis_Contig1.222.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=61bp
MHKKPSTQDGQGHEKARKSTHSRMNAAVAAECRADEGDGCLGELQALFST
ALTPVGRCRER
back to top

mRNA from alignment at P-littoralis_Contig1:1099907..1101088-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.222.1 ID=mRNA_P-littoralis_Contig1.222.1|Name=mRNA_P-littoralis_Contig1.222.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1182bp|location=Sequence derived from alignment at P-littoralis_Contig1:1099907..1101088- (Pylaiella littoralis U1_48)
GGGGTGGGGGGTGGTGGCGCGGTGGATCCCTTCGCGTGGTTCCCCGTCCT
TTTATGACAGCAAAGAGTGTGCATGCGATCTAATCTTTGTGGGTAATTGA
GGTTCGAGGCGTAGCCCTCGGGTGCCAGATGCACAAGAAGCCTTCGACTC
AGGATGGACAAGGACACGAGAAGGCGCGAAAGAGCACACACTCACGTATG
AATGCCGCTGTCGCTGCTGAGTGTCGTGCTGATGAGGGTGACGGTTGCCT
TGGTGAGTTACAAGCTCTTTTTTCCACCGCCCTGGTCAGACACGTCCGAT
CACGGCCAGGGCCTGCATTTGTGTCTAGTGCGGTAGTCGTGCTTCATTAT
GTGTTCTCCTGTACAGCAGTCGCGAAAACGTGGACGGAAGTATTGACTCT
GCTGCGGAAGACGAAAACAAGACACGTACAAGACGCATGTTGCATGGTGT
CCTGTTTTCGGTGGTATGCCAGTCCGTAGAACGGATTTCTCGCCGGTCCT
CGTTTGCTTTGTCGAGATTTGTCGGTCAATGCCATGCTACCAAGCCCCCC
CCCCCTCCCTCGCGCCCCTCCACCCCTGAACCACCACCCCCATCGCCACC
ACGCCACCACTACTGCTGTGTGCGCCACAAATCCCTTTCTCTCGTTGGAG
GTTAAATCAGACCCTTTTCCCTGGCCCATACTTCTTGAGGTTCTGTCTGG
TGGTGCCACCGCGATTACAATCCCCAGCGCTGGGGATTGGAAGAAATCCC
CAGCCAGAGAAACGCCTCCAGAACTATCAAAATAAGCTCTTTTGACCGCG
TTCTGTCTTGCGGACCACCAGCGTTCCGCGACCGCGGCGCAGTCGCGGTT
GTGCTCGCTACGGCCCTCCTCGGTCGGTCGTGAGGGTTAGGGTTAGGGTT
GGGTTGGGTTGGGTTGGGGTGGGTACGTGTGTACCGGTTTGTCATGGTTC
GTGTGCTGAACTGAAGTCAAACTTTCTTTCAGATCTAAAGATCCTCTAAA
CAGACAGGTGTAAATTTGTTGGTTCAGCTCTTCCACAACCATATCATCCA
TATATCTCGAATAAAGCGACACACACGTGTACGTCTTCATCATCTCCCCT
CCAAGCTCATACGGAGTATATTCACGGGCCCTGACACTCGCACACTGGGT
ACCTCACACCAGTAGGAAGGTGTCGGGAAAGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1:1099907..1101088-

>mRNA_P-littoralis_Contig1.222.1 ID=mRNA_P-littoralis_Contig1.222.1|Name=mRNA_P-littoralis_Contig1.222.1|organism=Pylaiella littoralis U1_48|type=CDS|length=183bp|location=Sequence derived from alignment at P-littoralis_Contig1:1099907..1101088- (Pylaiella littoralis U1_48)
ATGCACAAGAAGCCTTCGACTCAGGATGGACAAGGACACGAGAAGGCGCG
AAAGAGCACACACTCACGTATGAATGCCGCTGTCGCTGCTGAGTGTCGTG
CTGATGAGGGTGACGGTTGCCTTGGTGAGTTACAAGCTCTTTTTTCCACC
GCCCTCACACCAGTAGGAAGGTGTCGGGAAAGA
back to top