mRNA_P-littoralis_Contig1.188.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1.188.1
Unique NamemRNA_P-littoralis_Contig1.188.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig1.188.1 vs. uniprot
Match: D7G7D4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7D4_ECTSI)

HSP 1 Score: 335 bits (858), Expect = 2.130e-106
Identity = 276/511 (54.01%), Postives = 325/511 (63.60%), Query Frame = 1 
Query:   25 QPFYAWDDPKAKCRGPRGAATLEAGGGAAVVNEASSVEGEEGKTSDGHHRRENNRPRRPHQPSFYDREALQEQLQGHESQRIDLSEKKAQLELRLKEAQTVLLDMRARKRGLSEDKMMGEAASEVLLSNGNVRAAGAFRDRKDRQ-HSNGNGGACRRRETRQQQRDEVANFAAQDRVMELEVLNNQLRRGQVGAEREAKSQQTASRATRAELQKVSERLKAMPRRFTESLLQLRDEVDKLESEKLSLELAKQQRSLKEADLLASAKRQQEYLGEELNALLDEIDDVEDDRDRWKRRLRVESARAASLRSQRDEALEALRDRFGGDAVERTAFALFASSRPKQKQIEGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGDVDGRE--KIPVSAIAKALRPAYGPDCDDDKHDDGVHHPGRVKDGRKVVVTLTAEAIEEAVESACGIDCSTL--SEENKRELGLGFGEFLAVANRLTVR 1542
            +P YAWDDP     G R  A+LE               G+ G+  + H R +NN      Q  FYD+EALQEQLQG +++ IDLSEK+  L LRL +AQ  L  MR +K GLS+ KM+ E  S         +AA     RK R+  SNG+GG   RRE R QQR E  NFAAQDRVMELE+LN+QLR+GQ  AER AK Q+   R+TRAE+ KV+ERLKAMP+RFT+SL  LRDEV+ LE EK +LELAK++++ KEADL+ASAKRQQ YLGEEL +LLDEIDDVEDDRDRWKRRLRVE+ RA SLRSQRDEAL ALR+RFG DAVER AFA FA++ PK     GG G         XXXXXXXXXXXXXXXXX  XXXXXXXXXXXXX                    G   G    KIPVS I+KAL+P YGPD D D   +G                LT EA+ EAV S CGIDCS +  +E     +G+G+ EF A+A RL  R
Sbjct:   13 KPVYAWDDP-----GTRPGASLE-------------ERGKAGRHHNRHLRYQNN------QAPFYDKEALQEQLQGLQAEGIDLSEKETHLGLRLAKAQATLSKMREKKVGLSQAKMLDEVMSVFP-----AKAADISVGRKHRESESNGDGGG--RREARSQQRHEETNFAAQDRVMELELLNSQLRKGQAEAERNAKLQEDTFRSTRAEVNKVAERLKAMPKRFTQSLQSLRDEVETLEREKFNLELAKERKTSKEADLIASAKRQQSYLGEELKSLLDEIDDVEDDRDRWKRRLRVETTRAESLRSQRDEALRALRERFGSDAVERAAFARFATA-PKGS---GGDGLMALSRRGWXXXXXXXXXXXXXXXXXYGXXXXXXXXXXXXXEK------------------GGFSGLRSPKIPVSMISKALKPVYGPDYDHDGGGEGF-------------ALLTEEAVGEAVLSECGIDCSAMEATEVEGGGVGVGYDEFRAIAKRLVER 457
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BLAST of mRNA_P-littoralis_Contig1.188.1 vs. uniprot
Match: A0A6H5K3E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3E6_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 4.350e-102
Identity = 240/517 (46.42%), Postives = 292/517 (56.48%), Query Frame = 1 
Query:   25 QPFYAWDDPKAKCRGPRGAATLEAGGGAAVVNEASSVEGEEGKTSDGHHRRENNRPRRPHQPSFYDREALQEQLQGHESQRIDLSEKKAQLELRLKEAQTVLLDMRARKRGLSEDKMMGEAASEVLLSNGNVRAAGAFRDRKDRQHSNGNGGACRRRETRQQQRDEVANFAAQDRVMELEVLNNQLRRGQVGAEREAKSQQTASRATRAELQKVSERLKAMPRRFTESLLQLRDEVDKLESEKLSLELAKQQRSLKEADLLASAKRQQEYLGEELNALLDEIDDVEDDRDRWKRRLRVESARAASLRSQRDEALEALRDRFGGDAVERTAFALFASSRPK----------QKQIEGGRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGDVDGREKIPVSAIAKALRPAYGPDCDDDKHDDGVHHPGRVKDGRKVVVTLTAEAIEEAVESACGIDCSTLSEEN-KRELGLGFGEFLAVANRLTVR 1542
            +P YAWDDP     G R  A+L+ GG             + G+  + H R +N       Q  FYD+EALQEQLQG  ++ IDLSEK+A+L  RL +AQ  L  MR +  GLS+ KM+ E  S         RAA     +K R+ S  NG    RRE R QQR E  NFAAQDRVMELE+LN+QLR+GQ  AER AK Q+   R+TRAE+ KV+ERLKAMP+RFT+SL  L+DEV+ LE EK  LELAK++++ KEADLLASAKRQQ YLGEEL++LLDEIDDVEDDRDRWKRRLRVE+ R  SLRSQR+EAL ALR+RFG DAVER AFA FA+  PK          ++   GGRG                                                          G   D+ G  KI VS I+KAL+P YGPDCD D   +G                LT EA+ EA  S CGIDCS     + +  +G+G+ EF A+A RL  R
Sbjct:   26 KPVYAWDDP-----GTRPGASLKEGG-------------KVGRDHNRHLRHQNT------QAPFYDKEALQEQLQGLRAEGIDLSEKEARLGFRLAKAQATLSRMREKMVGLSQAKMLDEVMSVFP-----ARAADVSVGKKHRE-SESNGDYGGRREARSQQRHEETNFAAQDRVMELELLNSQLRKGQAEAERNAKLQEATFRSTRAEVNKVAERLKAMPKRFTQSLQSLQDEVETLEREKFDLELAKERKTSKEADLLASAKRQQSYLGEELSSLLDEIDDVEDDRDRWKRRLRVETTRTESLRSQREEALRALRERFGSDAVERVAFARFATG-PKGSGKGLMTLSRRGRRGGRGTGSDRDEEDDYEDGDHDSGERDDSGER-------------------------------GGFSDL-GSPKILVSMISKALKPVYGPDCDHDGGGEGF-------------ALLTDEAVAEAALSECGIDCSEKEAADVEGGVGVGYDEFRAIAKRLVER 466
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1.188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G7D4_ECTSI2.130e-10654.01Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3E6_9PHAE4.350e-10246.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1contigP-littoralis_Contig1:983431..987405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1560
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_003230.1
Cds size1560
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789315.778741-CDS-P-littoralis_Contig1:983430..9840761680789315.778741-CDS-P-littoralis_Contig1:983430..984076Pylaiella littoralis U1_48CDSP-littoralis_Contig1 983431..984076 -
1680789315.7902641-CDS-P-littoralis_Contig1:984578..9847001680789315.7902641-CDS-P-littoralis_Contig1:984578..984700Pylaiella littoralis U1_48CDSP-littoralis_Contig1 984579..984700 -
1680789315.798432-CDS-P-littoralis_Contig1:985469..9857301680789315.798432-CDS-P-littoralis_Contig1:985469..985730Pylaiella littoralis U1_48CDSP-littoralis_Contig1 985470..985730 -
1680789315.8065712-CDS-P-littoralis_Contig1:986874..9874051680789315.8065712-CDS-P-littoralis_Contig1:986874..987405Pylaiella littoralis U1_48CDSP-littoralis_Contig1 986875..987405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1.188.1prot_P-littoralis_Contig1.188.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1 983431..987405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1.188.1

>prot_P-littoralis_Contig1.188.1 ID=prot_P-littoralis_Contig1.188.1|Name=mRNA_P-littoralis_Contig1.188.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=520bp
MATPSTRQQPFYAWDDPKAKCRGPRGAATLEAGGGAAVVNEASSVEGEEG
KTSDGHHRRENNRPRRPHQPSFYDREALQEQLQGHESQRIDLSEKKAQLE
LRLKEAQTVLLDMRARKRGLSEDKMMGEAASEVLLSNGNVRAAGAFRDRK
DRQHSNGNGGACRRRETRQQQRDEVANFAAQDRVMELEVLNNQLRRGQVG
AEREAKSQQTASRATRAELQKVSERLKAMPRRFTESLLQLRDEVDKLESE
KLSLELAKQQRSLKEADLLASAKRQQEYLGEELNALLDEIDDVEDDRDRW
KRRLRVESARAASLRSQRDEALEALRDRFGGDAVERTAFALFASSRPKQK
QIEGGRGGGREEAGGARWGGGCRRAARRGGESVSDEGGRGGGGNGHVFDE
GGGGDCVGSDDDDSSGCCGDVDGREKIPVSAIAKALRPAYGPDCDDDKHD
DGVHHPGRVKDGRKVVVTLTAEAIEEAVESACGIDCSTLSEENKRELGLG
FGEFLAVANRLTVRHQQID*
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mRNA from alignment at P-littoralis_Contig1:983431..987405-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1.188.1 ID=mRNA_P-littoralis_Contig1.188.1|Name=mRNA_P-littoralis_Contig1.188.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3975bp|location=Sequence derived from alignment at P-littoralis_Contig1:983431..987405- (Pylaiella littoralis U1_48)
ATGGCGACACCTTCTACAAGGCAGCAGCCGTTCTACGCATGGGATGACCC
GAAAGCCAAATGCCGTGGGCCTCGTGGAGCTGCAACATTAGAAGCAGGAG
GAGGAGCAGCAGTAGTGAACGAGGCATCATCCGTCGAAGGAGAAGAAGGA
AAGACAAGCGATGGCCATCATCGTCGAGAAAACAATCGCCCTCGACGTCC
TCACCAACCCTCGTTCTATGACAGAGAGGCTCTGCAAGAACAGCTGCAAG
GCCACGAGTCCCAGCGTATCGATCTTTCAGAGAAGAAAGCTCAATTGGAG
CTTCGATTGAAGGAGGCACAGACGGTACTGTTAGATATGCGGGCCAGAAA
GCGCGGTCTTTCTGAGGACAAGATGATGGGTGAGGCAGCCTCGGAAGTAT
TGCTCTCGAATGGCAACGTGAGGGCGGCGGGGGCCTTCAGAGATAGGAAA
GACCGACAGCACAGCAACGGCAACGGGGGCGCTTGTAGAAGGCGTGAAAC
GAGACAACAACAACGAGATGAAGTGGCCAACGTAAGCAAGTTGTTTGTGT
GATGATGCCTGCAGTAGGTAGTGGTAGCGGACAGACCAGTTATATCTTAC
AGCAGTGTCGCGTGCTGCGTGACTCCTCCCTTCGCTACCATCGTTGCCTG
CCGAATACCTTGGTATCCGGTGCTGTTTTGTATGTCTTGTCTAGAATCGT
AATGTCGCAGCAGAATGAACAGCTGAAAACAATTTCACGTAAAGACTCCA
GATCGAACAGTCAGAGCGTATTGCTGCTGTAAATGTATGGTTAAGGCCAC
GGGGGAATCGGTTGCAGGTTTTTCGTAGGCTTTCGACAAACGCCTTAACA
TTCTGTGTCCAACGTCCATCTTGGAGTACGAACCTACCATCATTGCAGAA
TAGTACCCGAGACGGTAGCTGTGACCAAAAACTAGTATCTAGGATCCAAG
TCCTTGCCATATACTTCAGATTCGTCGTCTGTGATTTTGAAACAAGCCCT
CTCCTTCATTCTAGTTCTGTGAGCTACAAGCAGTAGAAGCCGTAAAAGCA
GAGCGTGAATACCTGCGACCGCTATTTCAGCACGATGATCTCCCCACATA
CCTTTCCCATCGCGGTGATTGATTCGGCCGACGCAGGCACTCACGCATGC
CTTGATTGTTCGGATGCTGTATCCTGCAAGCGTTCAAAAGTATGGCTGCT
ACAGCAGTATCCACACGAAGCACTGTAGCTCATAGAACTCCATGATGGAT
GATATAGATACCATGGATTTTCATCCTTCTTCTTTGTATGGAATATAGGA
ACACATGGATAGAACGTACAGAGATTCGGACGTCTGCCGGACAAATACAA
TATCTCCCATGATCTCCGAACCGTGGTGACGGAGAATTCGGAAGTGAAGT
GCGACTATGACCGAATTCGTGGGATCGGGAAGTGATCCACGATGGCTAGC
CTCGTCCCACTCGCTAACCTAGCCCTGGCTGATACAGAAGTTTCCGAGGT
GGCATCAAACGCTCGCAGGCTGTGAGAAAATTAGCATTCCGTATGTGTGA
TTACCCGTAATGCATATAGCGGGACTGCATCGATCTTTAGATTAAGTTCG
CACGATGTACAGCAATACCGGTGGTCGCATCTTGTCGAGGTAAACTTTTG
CAACAACGCCATTCCCATTGATCAGTTTGCAGCGCAGGATAGAGTTATGG
AGCTGGAAGTATTGAACAACCAGCTCAGGAGGGGACAGGTGGGGGCCGAA
AGGGAGGCCAAATCGCAGCAGACCGCTTCCCGCGCCACCAGAGCAGAATT
GCAAAAGGTTTCGGAGAGACTGAAAGCCATGCCGAGGCGATTCACTGAGA
GCCTGTTGCAACTGCGGGACGAGGTGGATAAACTGGAGAGCGAAAAGCTG
TCCCTGGAGCTAGCAAAACAACAGAGAAGTTTGAAGGTACCTCGTTAAAG
AGTGTTTTTTGTCTTGCTGAGTAACACTCAACACACAGTTTGATTTCGCG
GTTCCGTCGACAACCCCTCCCTCTAACCGTCAACCACATCGACTTGTATT
ATTCCTTTGCCACAGTCAAGCACATGGCCCTTGAACTACATTGAAACTAC
CCGTCATCCACACTCTTGCCCTCTCGCCCGATTAGTCCACATCCACCACA
CGCACATCTTTGGAGGATAATGACTGACGAAGCGTTTCAGTTTTCAACAC
CTGGCCGCTCACGTATTCTTCTTGATTAGCCAAGCGTGTTATGGTCAATG
CAAGTGTTAAAAATGATCCACACACGTGCACACTGGTGCTACATGTTGTT
TACAAGGGAGGAAACCGTGCCCAACCTTAATCACCCGCTCTGGGAAATCG
TGCATTTGTTGTTGTTGTAGTCTTCTCAACAACAGCAAACTGGCGTATTT
CAGGTTGATCAAGATGAGGTATCCACATTGACCAAAAACACTGACAAACA
CAACAACACCATAAATGACCCAGAAAACCATTTGTATTCAGTAGATTAAA
TCTCACCCACCTACACCTAAACTGCTCATACAAACCATCACACCAACAAG
CAGGAGGTGGAGGTATCCAAAAGGACAACAAAAACACTGACAAACACAAG
CGACACCATAAATGACCCAGGGAAATGCTTAATTCAGTAGATCCTTCAAT
CTCACCCACCCACACCTAGACTGTACATGCAAACCATCACACTCAACAAG
AGCAGGAAGCGGACCTGCTAGCCTCTGCCAAGAGGCAGCAGGAGTACCTG
GGAGAAGAGCTCAATGCGCTTTTGGACGAAATCGACGACGTGGAGGACGA
TCGAGACCGCTGGAAGCGCCGTCTTCGGTGAGATATGCTCATATAACACT
CAAACATAGCAGTATTGCTGTCCATCTCTCGTCTCATCGCTGTGCACTAA
GTGGGTTAAAGTCTACAGGAGGTGACCTGGTCCTCGGGCCGTCTCGATGT
TCTCGTTTCTTCTCCGAAAGGCCTGCTTATGATCGTTGCTGCGAAGAAGG
GTGATACCGCTCTTCAAAGCAATTCCACTCAACCCTCGTCTTCTCGCTAT
CCCCAATGCTACAAACCGAATGACGAGAAGGTGACTGCTGCCAGTAGGGC
CTCATTCCCCCCGTGTCTCTTCCTTTCTCCAAACGTAAACGTAAAGCAAA
TGACACCCAACACCAAACGCCAAATTTGGCCGAGGCTTGGTGCGCGTTTA
TTATCTTAGAATTGGTCTCATACATGGCCATGCCAGAATGTCTTATTCTC
CAAGGAAGTCGAGCCTCCTGCAGATTCTACTTGGGAGCACGCCTTGCTTG
ATGTCGTGTACACCGTTGTGAACCCGCAGGGTGGAATCCGCTCGCGCGGC
GTCCTTGCGGTCACAGAGGGACGAAGCTCTGGAGGCTCTACGGGATCGTT
TCGGGGGCGATGCCGTTGAGCGCACCGCGTTTGCGTTATTCGCAAGCAGC
CGGCCAAAACAAAAACAGATCGAAGGAGGAAGGGGAGGAGGAAGAGAAGA
AGCAGGAGGCGCACGTTGGGGCGGCGGCTGTCGGCGAGCAGCCCGGAGGG
GTGGGGAGTCCGTCTCCGACGAGGGTGGACGGGGTGGGGGTGGGAACGGC
CACGTGTTTGATGAGGGTGGGGGTGGCGATTGCGTTGGATCTGACGATGA
TGATAGCAGCGGTTGTTGTGGTGACGTCGATGGACGGGAAAAAATCCCGG
TGTCAGCCATTGCTAAGGCCTTGAGACCGGCGTATGGGCCCGATTGCGAC
GACGACAAGCACGATGATGGCGTGCACCACCCGGGACGAGTTAAGGATGG
GAGAAAGGTGGTCGTAACTCTTACCGCTGAGGCTATCGAAGAGGCGGTTG
AATCGGCGTGCGGGATCGATTGTTCGACGTTGAGCGAGGAAAACAAGCGA
GAGTTGGGACTGGGGTTCGGGGAGTTCCTTGCTGTCGCGAATCGATTGAC
AGTAAGACATCAACAAATTGACTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1:983431..987405-

>mRNA_P-littoralis_Contig1.188.1 ID=mRNA_P-littoralis_Contig1.188.1|Name=mRNA_P-littoralis_Contig1.188.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1560bp|location=Sequence derived from alignment at P-littoralis_Contig1:983431..987405- (Pylaiella littoralis U1_48)
ATGGCGACACCTTCTACAAGGCAGCAGCCGTTCTACGCATGGGATGACCC
GAAAGCCAAATGCCGTGGGCCTCGTGGAGCTGCAACATTAGAAGCAGGAG
GAGGAGCAGCAGTAGTGAACGAGGCATCATCCGTCGAAGGAGAAGAAGGA
AAGACAAGCGATGGCCATCATCGTCGAGAAAACAATCGCCCTCGACGTCC
TCACCAACCCTCGTTCTATGACAGAGAGGCTCTGCAAGAACAGCTGCAAG
GCCACGAGTCCCAGCGTATCGATCTTTCAGAGAAGAAAGCTCAATTGGAG
CTTCGATTGAAGGAGGCACAGACGGTACTGTTAGATATGCGGGCCAGAAA
GCGCGGTCTTTCTGAGGACAAGATGATGGGTGAGGCAGCCTCGGAAGTAT
TGCTCTCGAATGGCAACGTGAGGGCGGCGGGGGCCTTCAGAGATAGGAAA
GACCGACAGCACAGCAACGGCAACGGGGGCGCTTGTAGAAGGCGTGAAAC
GAGACAACAACAACGAGATGAAGTGGCCAACTTTGCAGCGCAGGATAGAG
TTATGGAGCTGGAAGTATTGAACAACCAGCTCAGGAGGGGACAGGTGGGG
GCCGAAAGGGAGGCCAAATCGCAGCAGACCGCTTCCCGCGCCACCAGAGC
AGAATTGCAAAAGGTTTCGGAGAGACTGAAAGCCATGCCGAGGCGATTCA
CTGAGAGCCTGTTGCAACTGCGGGACGAGGTGGATAAACTGGAGAGCGAA
AAGCTGTCCCTGGAGCTAGCAAAACAACAGAGAAGTTTGAAGGAAGCGGA
CCTGCTAGCCTCTGCCAAGAGGCAGCAGGAGTACCTGGGAGAAGAGCTCA
ATGCGCTTTTGGACGAAATCGACGACGTGGAGGACGATCGAGACCGCTGG
AAGCGCCGTCTTCGGGTGGAATCCGCTCGCGCGGCGTCCTTGCGGTCACA
GAGGGACGAAGCTCTGGAGGCTCTACGGGATCGTTTCGGGGGCGATGCCG
TTGAGCGCACCGCGTTTGCGTTATTCGCAAGCAGCCGGCCAAAACAAAAA
CAGATCGAAGGAGGAAGGGGAGGAGGAAGAGAAGAAGCAGGAGGCGCACG
TTGGGGCGGCGGCTGTCGGCGAGCAGCCCGGAGGGGTGGGGAGTCCGTCT
CCGACGAGGGTGGACGGGGTGGGGGTGGGAACGGCCACGTGTTTGATGAG
GGTGGGGGTGGCGATTGCGTTGGATCTGACGATGATGATAGCAGCGGTTG
TTGTGGTGACGTCGATGGACGGGAAAAAATCCCGGTGTCAGCCATTGCTA
AGGCCTTGAGACCGGCGTATGGGCCCGATTGCGACGACGACAAGCACGAT
GATGGCGTGCACCACCCGGGACGAGTTAAGGATGGGAGAAAGGTGGTCGT
AACTCTTACCGCTGAGGCTATCGAAGAGGCGGTTGAATCGGCGTGCGGGA
TCGATTGTTCGACGTTGAGCGAGGAAAACAAGCGAGAGTTGGGACTGGGG
TTCGGGGAGTTCCTTGCTGTCGCGAATCGATTGACAGTAAGACATCAACA
AATTGACTAA
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