mRNA_P-fluviatile_contig22.4853.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4853.1
Unique NamemRNA_P-fluviatile_contig22.4853.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig22.4853.1 vs. uniprot
Match: Q8QN81_ESV1K (EsV-1-209 n=2 Tax=root TaxID=1 RepID=Q8QN81_ESV1K)

HSP 1 Score: 263 bits (672), Expect = 2.810e-81
Identity = 126/204 (61.76%), Postives = 160/204 (78.43%), Query Frame = 3 
Query:  531 IRVQFEYSLFLTSRVFRLEGLYISRYICPTQLAQLKGGPLAQIHESVERMKKNAKRMLRASLQSSSLKFATVDVNQMMKHPAMKTRINRCAGYAHDPDTVAAKMADFWLTKNDRAYRLRMLQSAMNKKGLTIREDSAYCHDYIHGGIDVDLDEIVGIQYITRTLFDIGGPRQWKRHRASCEDVFRRELLENGKNLERSIETALR 1142
            +R  FEYSLF+++R FRLEG+ ISR+ CP++LA+LK GPL+QI  SVER+KKNA RMLR +LQ      +T +V +MMKHPAM+TR+ RC  YAHDP+TVAAKMA+FW TK+DR +R R+LQ AM+ +GL IR DS YCHDYI G IDVDL+E+VGIQYITR LFD GGPR W  +  +CE  +R+ LLENG  +++SI+ ALR
Sbjct:  187 LRRDFEYSLFVSTRAFRLEGVAISRFFCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQGQG-SCSTTEVERMMKHPAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDRTHRRRVLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTGGPRFWSEYHHACESAYRQALLENGNTMDQSIKMALR 389
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BLAST of mRNA_P-fluviatile_contig22.4853.1 vs. uniprot
Match: A0A6H5JM66_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM66_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 5.050e-80
Identity = 127/205 (61.95%), Postives = 161/205 (78.54%), Query Frame = 3 
Query:  531 IRVQFEYSLFLTSRVFRLEGLYISRYICPTQLAQLKGGPLAQIHESVERMKKNAKRMLRASLQSS-SLKFATVDVNQMMKHPAMKTRINRCAGYAHDPDTVAAKMADFWLTKNDRAYRLRMLQSAMNKKGLTIREDSAYCHDYIHGGIDVDLDEIVGIQYITRTLFDIGGPRQWKRHRASCEDVFRRELLENGKNLERSIETALR 1142
            +R  FEYSLF+++R FRLEG+ ISRY+CP++LA+LK GPL+QI  SVER+KKNA RMLR +LQ   S   ++ +V +MMK+PAM+TR+ RC  YAHDP+TVAAKMA+FW TK+DR +R RMLQ AM+ +GL IR DS YCHDYI G IDVDL+E+VGIQYITR LFD GGPR W  +  +CE  +R  LLENG  +++SI+ ALR
Sbjct:  190 LRRAFEYSLFVSTRAFRLEGVAISRYLCPSELAELKNGPLSQIPASVERLKKNAPRMLRMALQGQGSCNISSTEVERMMKYPAMRTRVRRCIEYAHDPETVAAKMAEFWRTKDDRTHRRRMLQDAMDLRGLDIRPDSVYCHDYICGLIDVDLEELVGIQYITRELFDTGGPRFWSEYHHACESAYREALLENGNTMDQSIKMALR 394
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BLAST of mRNA_P-fluviatile_contig22.4853.1 vs. uniprot
Match: A0A6H5JEH1_9PHAE (HTH_OrfB_IS605 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 5.000e-13
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:  307 VHGVSPATPIHHKLFVNIFGDYLTSAAEPKKKLKELKYRFSAHDVAVWLCEPDPVCAMLFLEKQGV 504
            VH +SPA+ IH+ LF +IFGDYL  A  PKK LK+LKYRF AHD+++ LC  DPVCAM  LE + +
Sbjct:   19 VHKISPASQIHYVLFEHIFGDYLW-ATSPKKTLKQLKYRFFAHDISLDLCAADPVCAMHCLENRSI 83
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BLAST of mRNA_P-fluviatile_contig22.4853.1 vs. uniprot
Match: A0A835Z0N9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0N9_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 3.480e-11
Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = 3 
Query:  771 PAMKTRINRCAGYAH-DPDTVAAKMADFWLTKNDRAYRLRMLQSAMNKKGLTIREDSAYCHDYIHGGIDVDLDEIVGIQYITRTLFDIGGPRQWKRHRASCEDVFRRELLENGKNLERSIETAL 1139
            PA   R+ R   +   D    AAK+  F  T+ D   R  +LQ+AM+K+ L IR+DS +C  +I G +DVD +E+  I  IT  LFD  G   + +     E     E+ E GK+ +  +++A+
Sbjct:  257 PACARRVKRFMRHIRIDAAETAAKIVAFHRTRGDAVARRALLQAAMDKQHLEIRDDSDFCASFISGDVDVDPEEVAAIMDITAYLFDSWGHVAYSKCSLQAEAACLHEVFECGKSWDSGVQSAM 380
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4853.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Q8QN81_ESV1K2.810e-8161.76EsV-1-209 n=2 Tax=root TaxID=1 RepID=Q8QN81_ESV1K[more]
A0A6H5JM66_9PHAE5.050e-8061.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEH1_9PHAE5.000e-1359.09HTH_OrfB_IS605 domain-containing protein n=1 Tax=E... [more]
A0A835Z0N9_9STRA3.480e-1133.87Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:1213830..1214980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1151
Cds size681
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815976.0256445-CDS-P-fluviatile_contig22:1213829..12145101622815976.0256445-CDS-P-fluviatile_contig22:1213829..1214510Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1213830..1214510 -
1693563924.0021064-CDS-P-fluviatile_contig22:1213829..12145101693563924.0021064-CDS-P-fluviatile_contig22:1213829..1214510Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 1213830..1214510 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815976.0359056-UTR-P-fluviatile_contig22:1214510..12149801622815976.0359056-UTR-P-fluviatile_contig22:1214510..1214980Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1214511..1214980 -
1693563924.0103939-UTR-P-fluviatile_contig22:1214510..12149801693563924.0103939-UTR-P-fluviatile_contig22:1214510..1214980Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 1214511..1214980 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4853.1prot_P-fluviatile_contig22.4853.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 1213830..1214510 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4853.1

>prot_P-fluviatile_contig22.4853.1 ID=prot_P-fluviatile_contig22.4853.1|Name=mRNA_P-fluviatile_contig22.4853.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=227bp
MRHAISRKAGGSSHAHRVQLIRVQFEYSLFLTSRVFRLEGLYISRYICPT
QLAQLKGGPLAQIHESVERMKKNAKRMLRASLQSSSLKFATVDVNQMMKH
PAMKTRINRCAGYAHDPDTVAAKMADFWLTKNDRAYRLRMLQSAMNKKGL
TIREDSAYCHDYIHGGIDVDLDEIVGIQYITRTLFDIGGPRQWKRHRASC
EDVFRRELLENGKNLERSIETALRRV*
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mRNA from alignment at P-fluviatile_contig22:1213830..1214980-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4853.1 ID=mRNA_P-fluviatile_contig22.4853.1|Name=mRNA_P-fluviatile_contig22.4853.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1151bp|location=Sequence derived from alignment at P-fluviatile_contig22:1213830..1214980- (Porterinema fluviatile SAG_2381)
ATGTACAAGGGCATTCGCCTGACCCTGGTTTGTGTTTCGTGCGCGGCCAC
CGCGTGCAGCGACGAGGGACACACGCTGATCTGCCGATCGAAAGCCAGGG
CGCTGTTTCCCCTAATACCACCGAAGCGCCTGGAAAAGCTCGGATCGACT
CCTCACAGAAACCCGTACTACAAGAGCGCCGCTCCCATGCGCTTGTTCTG
TCTTGCGGAAATCAAAGTCCTTCACAAGACCATCGAGGCAGAGGTGGCGG
TTAAAGACGAGCTCCTCGCCACGAAAAGGCGCGCTCGGCTACAAAGAATG
GTTACCGTGCATGGCGTAAGCCCTGCAACGCCGATTCACCACAAACTTTT
CGTAAACATATTTGGGGACTACTTGACCAGTGCAGCGGAGCCAAAGAAAA
AACTGAAGGAACTCAAGTACAGGTTTTCGGCGCACGACGTAGCCGTGTGG
CTCTGTGAGCCAGACCCCGTATGCGCCATGCTATTTCTAGAAAAGCAGGG
GGTAGCTCTCACGCTCACCGAGTCCAGCTCATCAGGGTACAATTTGAGTA
CTCGCTCTTCCTGACGTCGCGTGTGTTCCGCCTAGAAGGCCTGTACATCT
CGCGGTACATCTGTCCGACTCAGCTTGCGCAACTGAAAGGTGGCCCGCTA
GCGCAAATCCACGAGAGCGTCGAGCGGATGAAAAAAAACGCGAAGCGGAT
GCTGAGAGCGTCGCTGCAATCCTCATCACTGAAATTCGCAACGGTCGATG
TGAACCAGATGATGAAACACCCCGCAATGAAAACGAGAATCAACAGGTGT
GCCGGGTACGCACACGACCCCGACACGGTGGCCGCAAAGATGGCGGACTT
CTGGTTGACCAAAAACGACCGTGCCTACCGTCTGCGAATGCTACAGAGCG
CCATGAACAAAAAAGGATTGACTATCAGGGAAGACAGCGCTTACTGCCAC
GACTATATACACGGCGGAATAGACGTTGATTTGGACGAGATTGTAGGCAT
TCAGTACATCACAAGGACGTTGTTCGACATCGGTGGACCGCGTCAATGGA
AGCGCCATCGCGCATCTTGCGAGGACGTCTTCCGGCGCGAGCTGCTGGAG
AACGGCAAAAACTTGGAGCGGTCTATCGAAACGGCACTCCGGCGGGTCTA
A
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:1213830..1214980-

>mRNA_P-fluviatile_contig22.4853.1 ID=mRNA_P-fluviatile_contig22.4853.1|Name=mRNA_P-fluviatile_contig22.4853.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1362bp|location=Sequence derived from alignment at P-fluviatile_contig22:1213830..1214980- (Porterinema fluviatile SAG_2381)
ATGCGCCATGCTATTTCTAGAAAAGCAGGGGGTAGCTCTCACGCTCACCG
AGTCCAGCTCATCAGGGTACAATTTGAGTACTCGCTCTTCCTGACGTCGC
GTGTGTTCCGCCTAGAAGGCCTGTACATCTCGCGGTACATCTGTCCGACT
CAGCTTGCGCAACTGAAAGGTGGCCCGCTAGCGCAAATCCACGAGAGCGT
CGAGCGGATGAAAAAAAACGCGAAGCGGATGCTGAGAGCGTCGCTGCAAT
CCTCATCACTGAAATTCGCAACGGTCGATGTGAACCAGATGATGAAACAC
CCCGCAATGAAAACGAGAATCAACAGGTGTGCCGGGTACGCACACGACCC
CGACACGGTGGCCGCAAAGATGGCGGACTTCTGGTTGACCAAAAACGACC
GTGCCTACCGTCTGCGAATGCTACAGAGCGCCATGAACAAAAAAGGATTG
ACTATCAGGGAAGACAGCGCTTACTGCCACGACTATATACACGGCGGAAT
AGACGTTGATTTGGACGAGATTGTAGGCATTCAGTACATCACAAGGACGT
TGTTCGACATCGGTGGACCGCGTCAATGGAAGCGCCATCGCGCATCTTGC
GAGGACGTCTTCCGGCGCGAGCTGCTGGAGAACGGCAAAAACTTGGAGCG
GTCTATCGAAACGGCACTCCGGCGGGTCTAAATGCGCCATGCTATTTCTA
GAAAAGCAGGGGGTAGCTCTCACGCTCACCGAGTCCAGCTCATCAGGGTA
CAATTTGAGTACTCGCTCTTCCTGACGTCGCGTGTGTTCCGCCTAGAAGG
CCTGTACATCTCGCGGTACATCTGTCCGACTCAGCTTGCGCAACTGAAAG
GTGGCCCGCTAGCGCAAATCCACGAGAGCGTCGAGCGGATGAAAAAAAAC
GCGAAGCGGATGCTGAGAGCGTCGCTGCAATCCTCATCACTGAAATTCGC
AACGGTCGATGTGAACCAGATGATGAAACACCCCGCAATGAAAACGAGAA
TCAACAGGTGTGCCGGGTACGCACACGACCCCGACACGGTGGCCGCAAAG
ATGGCGGACTTCTGGTTGACCAAAAACGACCGTGCCTACCGTCTGCGAAT
GCTACAGAGCGCCATGAACAAAAAAGGATTGACTATCAGGGAAGACAGCG
CTTACTGCCACGACTATATACACGGCGGAATAGACGTTGATTTGGACGAG
ATTGTAGGCATTCAGTACATCACAAGGACGTTGTTCGACATCGGTGGACC
GCGTCAATGGAAGCGCCATCGCGCATCTTGCGAGGACGTCTTCCGGCGCG
AGCTGCTGGAGAACGGCAAAAACTTGGAGCGGTCTATCGAAACGGCACTC
CGGCGGGTCTAA
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