mRNA_P-fluviatile_contig22.5041.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.5041.1
Unique NamemRNA_P-fluviatile_contig22.5041.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.5041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:2582689..2583279 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size387
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.5041.1prot_P-fluviatile_contig22.5041.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 2582721..2583107 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815959.8363898-UTR-P-fluviatile_contig22:2582688..25827201622815959.8363898-UTR-P-fluviatile_contig22:2582688..2582720Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2582689..2582720 +
1693563853.9078393-UTR-P-fluviatile_contig22:2582688..25827201693563853.9078393-UTR-P-fluviatile_contig22:2582688..2582720Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2582689..2582720 +
1622815959.8658767-UTR-P-fluviatile_contig22:2583107..25832791622815959.8658767-UTR-P-fluviatile_contig22:2583107..2583279Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2583108..2583279 +
1693563853.925265-UTR-P-fluviatile_contig22:2583107..25832791693563853.925265-UTR-P-fluviatile_contig22:2583107..2583279Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 2583108..2583279 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815959.8536518-CDS-P-fluviatile_contig22:2582720..25831071622815959.8536518-CDS-P-fluviatile_contig22:2582720..2583107Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2582721..2583107 +
1693563853.9155533-CDS-P-fluviatile_contig22:2582720..25831071693563853.9155533-CDS-P-fluviatile_contig22:2582720..2583107Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 2582721..2583107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.5041.1

>prot_P-fluviatile_contig22.5041.1 ID=prot_P-fluviatile_contig22.5041.1|Name=mRNA_P-fluviatile_contig22.5041.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=129bp
MGPPGRSFNCPRPPSKRGELKTSVSTPAALLWRQLPPASSAALPRLLRKI
STASRRLLGKISTALRLLYQVRTISQLQSTAALVSTSKTPAPALCCPHPE
RVWVQQKLRACGSDEAAVVALPSCTCEL*
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mRNA from alignment at P-fluviatile_contig22:2582689..2583279+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.5041.1 ID=mRNA_P-fluviatile_contig22.5041.1|Name=mRNA_P-fluviatile_contig22.5041.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=591bp|location=Sequence derived from alignment at P-fluviatile_contig22:2582689..2583279+ (Porterinema fluviatile SAG_2381)
CATACAGCCCACCTTCTCCGGTAGTCACGCGCATGGGACCACCTGGCCGA
AGCTTCAACTGTCCCCGCCCTCCGTCCAAGCGCGGGGAGCTCAAGACATC
CGTGTCCACCCCTGCGGCCCTGCTGTGGCGGCAGCTGCCGCCCGCATCCT
CCGCCGCCCTGCCGCGGCTGTTGCGAAAAATTTCCACCGCTTCGCGACGA
CTGCTTGGAAAAATTTCCACCGCGCTGCGACTGCTGTACCAGGTGCGCAC
CATCTCCCAATTGCAATCCACGGCCGCCCTGGTATCCACCTCCAAAACCC
CCGCTCCCGCCCTCTGCTGCCCCCATCCTGAAAGGGTCTGGGTTCAGCAA
AAGTTGCGAGCGTGCGGATCTGACGAAGCTGCTGTCGTTGCGCTACCATC
CTGCACCTGTGAATTATAAAACATGTAGTCCATGTAGTCTAGTTGTATTT
TCCTGTCTTTTCTGCAGCCTGTCGCAAGCCCTTCGTTACCTTGCACAGTT
GTATGTATCCTTGTCGCAAGTCCTTGTTACCTTGCACTTGTATCATCTTT
CTCTCATCATGTCGCAAGCCCCACGTTATCCTTGCACATGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig22:2582689..2583279+

>mRNA_P-fluviatile_contig22.5041.1 ID=mRNA_P-fluviatile_contig22.5041.1|Name=mRNA_P-fluviatile_contig22.5041.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=774bp|location=Sequence derived from alignment at P-fluviatile_contig22:2582689..2583279+ (Porterinema fluviatile SAG_2381)
ATGGGACCACCTGGCCGAAGCTTCAACTGTCCCCGCCCTCCGTCCAAGCG
CGGGGAGCTCAAGACATCCGTGTCCACCCCTGCGGCCCTGCTGTGGCGGC
AGCTGCCGCCCGCATCCTCCGCCGCCCTGCCGCGGCTGTTGCGAAAAATT
TCCACCGCTTCGCGACGACTGCTTGGAAAAATTTCCACCGCGCTGCGACT
GCTGTACCAGGTGCGCACCATCTCCCAATTGCAATCCACGGCCGCCCTGG
TATCCACCTCCAAAACCCCCGCTCCCGCCCTCTGCTGCCCCCATCCTGAA
AGGGTCTGGGTTCAGCAAAAGTTGCGAGCGTGCGGATCTGACGAAGCTGC
TGTCGTTGCGCTACCATCCTGCACCTGTGAATTATAAATGGGACCACCTG
GCCGAAGCTTCAACTGTCCCCGCCCTCCGTCCAAGCGCGGGGAGCTCAAG
ACATCCGTGTCCACCCCTGCGGCCCTGCTGTGGCGGCAGCTGCCGCCCGC
ATCCTCCGCCGCCCTGCCGCGGCTGTTGCGAAAAATTTCCACCGCTTCGC
GACGACTGCTTGGAAAAATTTCCACCGCGCTGCGACTGCTGTACCAGGTG
CGCACCATCTCCCAATTGCAATCCACGGCCGCCCTGGTATCCACCTCCAA
AACCCCCGCTCCCGCCCTCTGCTGCCCCCATCCTGAAAGGGTCTGGGTTC
AGCAAAAGTTGCGAGCGTGCGGATCTGACGAAGCTGCTGTCGTTGCGCTA
CCATCCTGCACCTGTGAATTATAA
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