mRNA_P-fluviatile_contig22.4707.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig22.4707.1
Unique NamemRNA_P-fluviatile_contig22.4707.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig22.4707.1 vs. uniprot
Match: A0A6H5KSN9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSN9_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.610e-14
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = -1 
Query:   81 KMERVMGLIDPAYRLDNYRQSYEDPSCVLVLPVLEMINEDPSLLPPPPAQGQSGRPKK-GPPPGRRIPSKGEKAASAANNVRMSELPGATPG---ADGLSQG 374
            KM+ VM L++PAYRL  +RQ+Y D +  +++PV   + ED +LLPP P  GQ+G PKK GP   R I  +G+K AS++   R+SEL  A  G   A  LSQG
Sbjct:   20 KMDAVMTLMNPAYRLKYHRQTYGDDAYQVMMPVASTLEEDDTLLPPLPVDGQAGAPKKLGPKKFRGIAGRGDKYASSSFITRVSELGPAASGTTAAPSLSQG 121
[Close]
BLAST of mRNA_P-fluviatile_contig22.4707.1 vs. uniprot
Match: A0A6H5K727_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K727_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.860e-13
Identity = 49/102 (48.04%), Postives = 65/102 (63.73%), Query Frame = -1 
Query:   81 KMERVMGLIDPAYRLDNYRQSYEDPSCVLVLPVLEMINEDPSLLPPPPAQGQSGRPKK-GPPPGRRIPSKGEKAASAANNVRMSELPGATPG---ADGLSQG 374
            KM+ VM L++PAYRL  +RQ+Y D +  ++LPV   + ED +LLPP P  GQ+  PKK GP   +RI  +G+K AS++ N R SEL  A  G   A  LSQG
Sbjct:   13 KMDAVMTLMNPAYRLKYHRQTYGDDAYQVMLPVASTLEEDDTLLPPLPVDGQACAPKKLGPKKFKRIAGRGDKYASSSFNTRDSELGPAASGTTAAPSLSQG 114
[Close]
BLAST of mRNA_P-fluviatile_contig22.4707.1 vs. uniprot
Match: A0A6H5JCH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.580e-12
Identity = 47/102 (46.08%), Postives = 63/102 (61.76%), Query Frame = -1 
Query:   81 KMERVMGLIDPAYRLDNYRQSYEDPSCVLVLPVLEMINEDPSLLPPPPAQGQSGRPKK-GPPPGRRIPSKGEKAASAANNVRMSELPGATPG---ADGLSQG 374
            KM+ VM L++P YRL  +RQ+Y D +  ++LPV   + ED +LLPP P  GQ G PKK GP   + I  + +K AS++ N R+SEL  A  G   A  LSQG
Sbjct:   41 KMDAVMTLMNPTYRLKYHRQTYGDDAYQVMLPVASTLKEDDTLLPPLPVDGQVGAPKKLGPKKFKGIAGRRDKYASSSFNTRVSELGPAASGTTAAPSLSQG 142
[Close]
BLAST of mRNA_P-fluviatile_contig22.4707.1 vs. uniprot
Match: A0A6H5JSD2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSD2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.280e-12
Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = -1 
Query:   81 MERVMGLIDPAYRLDNYRQSYEDPSCVLVLPVLEMINEDPSLLPPPPAQGQSGRPKK-GPPPGRRIPSKGEKAASAANNVRMSEL-PGA--TPGADGLSQG 371
            M+ VM L++PA RL  +RQ+Y D +  ++LPV   + ED +LLPP P  GQ G  KK GP   +RI  +G+K AS++ N R+SEL P A  T  A  LSQG
Sbjct:    1 MDAVMTLMNPACRLQYHRQTYGDDAYQVMLPVPSTLEEDDTLLPPLPVDGQPGAHKKLGPKKLKRIAGRGDKYASSSFNTRVSELGPAAFGTTAAPSLSQG 101
[Close]
BLAST of mRNA_P-fluviatile_contig22.4707.1 vs. uniprot
Match: A0A6H5LAA7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAA7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.370e-11
Identity = 37/73 (50.68%), Postives = 48/73 (65.75%), Query Frame = -1 
Query:  159 KMERVMGLIDPAYRLDNYRQSYEDPSCVLVLPVLEMINEDPSLLPPPPAQGQSGRPKK-GPPPGRRIPSKGEK 374
            KM  VMGL+ PAYRL  +RQ+Y D    ++LPV   + ED +LLPP P   Q+G PKK GP   +RIP +G+K
Sbjct:   13 KMNAVMGLMHPAYRLQYHRQTYGDDEYQVMLPVSSTLEEDDTLLPPLPVDSQAGAPKKLGPKKFKRIPGRGDK 85
[Close]
BLAST of mRNA_P-fluviatile_contig22.4707.1 vs. uniprot
Match: A0A6H5KNL7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNL7_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 6.530e-11
Identity = 44/97 (45.36%), Postives = 60/97 (61.86%), Query Frame = -1 
Query:   81 MGLIDPAYRLDNYRQSYEDPSCVLVLPVLEMINEDPSLLPPPPAQGQSGRPKK-GPPPGRRIPSKGEKAASAANNVRMSELPGATPG---ADGLSQG 359
            M L+ PA+RL  +RQ+Y D +  ++LPV   + ED +L PP P  GQ+G PKK GP   +RI  + +K AS++ N R+SEL  A  G   A  LSQG
Sbjct:    1 MTLMHPAFRLQCHRQTYGDDAYQVMLPVPSTLEEDDTLRPPLPVDGQAGAPKKLGPKKFKRIAGRWDKYASSSFNTRVSELGPAASGTTAAPSLSQG 97
[Close]
BLAST of mRNA_P-fluviatile_contig22.4707.1 vs. uniprot
Match: A0A6H5K5N8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5N8_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 1.340e-10
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = -1 
Query:   81 KMERVMGLIDPAYRLDNYRQSYEDPSCVLVLPVLEMINEDPSLLPPPPAQGQSGRPK--KGPPPGRRIPSKGEKAASAANNVRMSELPGATPG---ADGLSQG 374
            KM+ VM L+ PAYRL  +R++Y D +  ++LPV   + ED +LLPP    GQ+G PK   GP   + IP +G+K AS++ N R+SEL     G   A  LSQG
Sbjct:  163 KMDVVMALMHPAYRLQYHRRTYGDNAYQIMLPVPSTLEEDDTLLPPFWVAGQAGAPKTKSGPKKYKMIPGRGDKNASSSFNRRVSELGPTASGSTAAPSLSQG 265
[Close]
BLAST of mRNA_P-fluviatile_contig22.4707.1 vs. uniprot
Match: A0A6H5JYU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.130e-8
Identity = 44/108 (40.74%), Postives = 60/108 (55.56%), Query Frame = -1 
Query:   81 MGLIDPAY-----------RLDNYRQSYEDPSCVLVLPVLEMINEDPSLLPPPPAQGQSGRPKK-GPPPGRRIPSKGEKAASAANNVRMSELPGATPG---ADGLSQG 359
            M L+ PAY            L  +RQ+Y D +  ++LPV   + ED +LLPP P  GQ+G PKK GP   +RI  +G+K AS++ N R+S+   A  G   A  LSQG
Sbjct:    1 MTLMHPAYGLVMXXXXXXXXLQYHRQTYGDDAYQVMLPVPSTLEEDDTLLPPVPVDGQAGAPKKLGPNKFKRIAGRGDKYASSSFNTRVSDFGPAASGTTAAPSLSQG 108
[Close]
BLAST of mRNA_P-fluviatile_contig22.4707.1 vs. uniprot
Match: A0A6H5JDY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDY3_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 7.750e-8
Identity = 40/85 (47.06%), Postives = 54/85 (63.53%), Query Frame = -1 
Query:   81 YRQSYEDPSCVLVLPVLEMINEDPSLLPPPPAQGQSGRPKK-GPPPGRRIPSKGEKAASAANNVRMSELPGATPG---ADGLSQG 323
            +RQ+Y D +  ++LPV   + ED +LLPP P  GQ+G PKK GP   +RI  +G+K AS++ N R+SEL  A  G   A  LSQG
Sbjct:  205 HRQTYADDAYQVMLPVPSTLEEDDTLLPPLPVDGQAGAPKKLGPKKFKRIAGRGDKYASSSFNTRVSELGPAASGTTAAPSLSQG 289
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig22.4707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KSN9_9PHAE7.610e-1447.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K727_9PHAE1.860e-1348.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCH3_9PHAE1.580e-1246.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSD2_9PHAE2.280e-1247.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LAA7_9PHAE1.370e-1150.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNL7_9PHAE6.530e-1145.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5N8_9PHAE1.340e-1044.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYU3_9PHAE3.130e-840.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JDY3_9PHAE7.750e-847.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig22contigP-fluviatile_contig22:30386..32636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size379
Cds size312
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig22.4707.1prot_P-fluviatile_contig22.4707.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig22 30386..32571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815956.873166-CDS-P-fluviatile_contig22:30385..304561622815956.873166-CDS-P-fluviatile_contig22:30385..30456Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 30386..30456 +
1693563847.8963418-CDS-P-fluviatile_contig22:30385..304561693563847.8963418-CDS-P-fluviatile_contig22:30385..30456Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 30386..30456 +
1622815956.8829968-CDS-P-fluviatile_contig22:32330..325711622815956.8829968-CDS-P-fluviatile_contig22:32330..32571Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 32331..32571 +
1693563848.0371099-CDS-P-fluviatile_contig22:32330..325711693563848.0371099-CDS-P-fluviatile_contig22:32330..32571Porterinema fluviatile SAG_2381CDSP-fluviatile_contig22 32331..32571 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815956.892282-UTR-P-fluviatile_contig22:32571..326361622815956.892282-UTR-P-fluviatile_contig22:32571..32636Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 32572..32636 +
1693563848.1898592-UTR-P-fluviatile_contig22:32571..326361693563848.1898592-UTR-P-fluviatile_contig22:32571..32636Porterinema fluviatile SAG_2381UTRP-fluviatile_contig22 32572..32636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig22.4707.1

>prot_P-fluviatile_contig22.4707.1 ID=prot_P-fluviatile_contig22.4707.1|Name=mRNA_P-fluviatile_contig22.4707.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=104bp
WNSSVARTAQHAAGALAQQQRDYCAPDPCDSPSAPGVAPGSSDIRTLFAA
EAAFSPFDGILLPGGGPFFGRPDWPWAGGGGSREGSSLIISSTGRTRTQL
GSS*
back to top

mRNA from alignment at P-fluviatile_contig22:30386..32636+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig22.4707.1 ID=mRNA_P-fluviatile_contig22.4707.1|Name=mRNA_P-fluviatile_contig22.4707.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2251bp|location=Sequence derived from alignment at P-fluviatile_contig22:30386..32636+ (Porterinema fluviatile SAG_2381)
TGGAATTCCAGCGTCGCTAGGACAGCTCAGCATGCTGCAGGAGCTCTGGC
TCAACAACAACGGGATTACTGGTGAGGAATGTGTACAATGTCGGATCTTC
TTTCGATTATTCTGTGGAAGCATGCATGAATCCCGCCCACGGCAGGACAC
ATTCCAGAAAGGTTAGGGCAGTGGCCAAAAAACAGTATACCGTGCCCGAA
TGTGGCCACGATGCGGTACAGGGTAGAACGACATACAACCGAGGCCGAAT
AGAGCCACGTGATTGGTCGAAACAGGACCGCACCCTACGCTGGCCGCTTT
TTCGGGCGGTATACCTCGCGGTGGCCACTCAGCTCGCGATGCCACCGTGT
TTGGCCACCACTTCTACCGTGTTTTGGCCACCCCGAGACAGGCTGTTCGC
TCAACCGACCAACGCATGGCAGGCCTCTCGCCAACGCCACGCTGGTGACG
TGGACCCGCATGTGCACGCGCCCGCTATCGACAAACTTTTGGTGCACTTC
TCTCTCTTTTTTTCCTCGGATTCTCTCCCTCTCTCTCACTCTTCATTAGT
GCGACGCGCATCGCCACCACACACACACCACACCACACGAAAGCGCACAA
CATCCGAAAGCACCGTGAGCGCCGGTGGGTCGCGGCCGCCGCCTACACCA
CACCATCTCCTTGACCAACTACTACCACTGTCGTCTGCGTTTGTTCGTCC
AGCTTGCGAGGAGAGCCAAATGCATTGAGCGTGGAGCATTCTTCAGAGCC
AGCTGAAGATATTGAGACTTCGCCCTTACCACCTCGTATCGTTAACGGAC
GTAGTAAAGTTCATTTATCATTGTTGATGAGTATGTCAAAACGTGGATGA
CAAGTCCCTGACAAAAAACCCCATCCCAAAACCGAGGAAACATCCACACA
CACACCGTCCCCTAGACTACTCAACATCGCATCCCCGAGACAAGTCTAAT
GGCCCTCGACTATTTCACGAGAAATCGCACGAACTGCATCGTACTGCTAG
CCTAAATTATAGGGCTACAAGTAAAATCATACTGGGATCATGCCACGAAT
CCGATGTAATATCCTTTCTGACATTTCTCAAGCAAGGTGACTCAAGCATG
TGAGCCGCACACACCATGCAGACTAGGGTTTGTTTCCCTTTGTTTCCCAC
TGCGCTCTTAATTTTGATTGAGCTCACAAGCCTTTAGAAGCTTAAGTAAC
ATTGTGGTGACGAACAGGATATGGTGACGAACAAAACGCGCGATTTAAAT
GGAAAAAATGAGGGAAATAGAAAAAAAATGAGGGTGATATACCACAGACG
ATGATAAAGACTAGGGCATCAGACCTGTATGCGTCGGAGTACTACTGGGA
ATGGTTGCTTTCGCCAGCACCAATCAAACCAAACTGCGAGCGTTGTAGAG
GAGGTGGGCTGTAGACTTGCACTCCTCGACAGGGTGAAAAAAGAGGGACA
CACTTTCGGATCCTACTCGGATACGCAATAGTGTCTGGTTGCGATGAGCA
AGCGTTCGAAGGCGTAGGCACCCCCGAGGACGACGGCAAGGCAAGGCAAG
CGGCATGCACTGGATGACAGCATGTGTAAAATGTTGTAAATAGTTGTGCT
TGTAAGGGGTGACGCCCAACACCAAACGTACGCCTGCTGCTGACCGTCGC
ATCACACCGCACCACTCGCATGAAACCCCCACTCCACGGGGCTGAGGCAC
ATTAGTAGCAGCACCTCTGCAGCGCAAGACACAAAACATGCACCGCCAAG
CAAAGCACCACACCACAACACTCCGAAAAACACGCCTCTCTCCTCCCTGG
GGCTGAGGCACAGCAGCAGCACCGCTGCAGCGCAAGACACAAAACATACA
CCGCTGCAACAAAGCGCCACCGGTCCGAGAGTGGCAACTTGCTTTTCTTT
GCATCAACTGATGTCGATGGGTGCTGCCGGCGCACCCTGCGACAGCGCGC
CCGACCCTTGCGACAGCCCGTCGGCGCCGGGCGTCGCGCCAGGGAGTTCG
GACATCCGCACGTTGTTCGCGGCAGAGGCAGCCTTTTCGCCCTTTGACGG
GATCCTCCTTCCCGGGGGAGGCCCTTTCTTTGGGCGACCGGACTGGCCCT
GGGCAGGGGGTGGCGGGAGTAGAGAGGGGTCCTCGTTGATCATCTCCAGC
ACGGGCAGGACCAGGACGCAGCTAGGATCCTCGTAAGACTGGCGGTAGTT
GTCGAGGCGGTAAGCCGGGTCGATGAGACCCATGACCCTCTCCATCTTGC
C
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig22:30386..32636+

>mRNA_P-fluviatile_contig22.4707.1 ID=mRNA_P-fluviatile_contig22.4707.1|Name=mRNA_P-fluviatile_contig22.4707.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=624bp|location=Sequence derived from alignment at P-fluviatile_contig22:30386..32636+ (Porterinema fluviatile SAG_2381)
TGGAATTCCAGCGTCGCTAGGACAGCTCAGCATGCTGCAGGAGCTCTGGC
TCAACAACAACGGGATTACTGTGGAATTCCAGCGTCGCTAGGACAGCTCA
GCATGCTGCAGGAGCTCTGGCTCAACAACAACGGGATTACTGCGCGCCCG
ACCCTTGCGACAGCCCGTCGGCGCCGGGCGTCGCGCCAGGGAGTTCGGAC
ATCCGCACGTTGTTCGCGGCAGAGGCAGCCTTTTCGCCCTTTGACGGGAT
CCTCCTTCCCGGGGGAGGCCCTTTCTTTGGGCGACCGGACTGGCCCTGGG
CAGGGGGTGGCGGGAGTAGAGAGGGGTCCTCGTTGATCATCTCCAGCACG
GGCAGGACCAGGACGCAGCTAGGATCCTCGTAACGCGCCCGACCCTTGCG
ACAGCCCGTCGGCGCCGGGCGTCGCGCCAGGGAGTTCGGACATCCGCACG
TTGTTCGCGGCAGAGGCAGCCTTTTCGCCCTTTGACGGGATCCTCCTTCC
CGGGGGAGGCCCTTTCTTTGGGCGACCGGACTGGCCCTGGGCAGGGGGTG
GCGGGAGTAGAGAGGGGTCCTCGTTGATCATCTCCAGCACGGGCAGGACC
AGGACGCAGCTAGGATCCTCGTAA
back to top