mRNA_P-fluviatile_contig21.4474.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4474.1
Unique NamemRNA_P-fluviatile_contig21.4474.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:237550..240288 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1715
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4474.1prot_P-fluviatile_contig21.4474.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 238623..239805 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815929.1015816-UTR-P-fluviatile_contig21:237549..2381131622815929.1015816-UTR-P-fluviatile_contig21:237549..238113Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 237550..238113 -
1693563762.2067056-UTR-P-fluviatile_contig21:237549..2381131693563762.2067056-UTR-P-fluviatile_contig21:237549..238113Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 237550..238113 -
1622815929.111722-UTR-P-fluviatile_contig21:238356..2384841622815929.111722-UTR-P-fluviatile_contig21:238356..238484Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 238357..238484 -
1693563762.2146404-UTR-P-fluviatile_contig21:238356..2384841693563762.2146404-UTR-P-fluviatile_contig21:238356..238484Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 238357..238484 -
1622815929.1217752-UTR-P-fluviatile_contig21:238562..2386221622815929.1217752-UTR-P-fluviatile_contig21:238562..238622Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 238563..238622 -
1693563762.2249966-UTR-P-fluviatile_contig21:238562..2386221693563762.2249966-UTR-P-fluviatile_contig21:238562..238622Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 238563..238622 -
1622815929.1540594-UTR-P-fluviatile_contig21:239805..2402881622815929.1540594-UTR-P-fluviatile_contig21:239805..240288Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 239806..240288 -
1693563762.2540169-UTR-P-fluviatile_contig21:239805..2402881693563762.2540169-UTR-P-fluviatile_contig21:239805..240288Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 239806..240288 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815929.1336644-CDS-P-fluviatile_contig21:238622..2387361622815929.1336644-CDS-P-fluviatile_contig21:238622..238736Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 238623..238736 -
1693563762.2347383-CDS-P-fluviatile_contig21:238622..2387361693563762.2347383-CDS-P-fluviatile_contig21:238622..238736Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 238623..238736 -
1622815929.144143-CDS-P-fluviatile_contig21:239439..2398051622815929.144143-CDS-P-fluviatile_contig21:239439..239805Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 239440..239805 -
1693563762.2445564-CDS-P-fluviatile_contig21:239439..2398051693563762.2445564-CDS-P-fluviatile_contig21:239439..239805Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 239440..239805 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4474.1

>prot_P-fluviatile_contig21.4474.1 ID=prot_P-fluviatile_contig21.4474.1|Name=mRNA_P-fluviatile_contig21.4474.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=160bp
MPSSTKKARQTPTFPTVVDILIRLKTFVDSESYLSFACVDRDWNRAWGSS
PKTTRCPVRETTVDMLHECFDHGLCRRSFRVCAEIASLDRLDLFQEAVSA
GCVVGSEACETAAMVGSLGILKVPGGAARWREGERERERERSATETRLTT
PPFRLVSGL*
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mRNA from alignment at P-fluviatile_contig21:237550..240288-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4474.1 ID=mRNA_P-fluviatile_contig21.4474.1|Name=mRNA_P-fluviatile_contig21.4474.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2739bp|location=Sequence derived from alignment at P-fluviatile_contig21:237550..240288- (Porterinema fluviatile SAG_2381)
CAGCGAGCTACCCGTGTGTGGGCGGAAGCTGGTGGGAAAAAATGAGACAC
ACACGCAAACACTGAAACACTCCCTTCTCTCTGCTCCCCACATAAGATCC
GCGGCAAGTGCGCTACCGCCAGGTGTCCTTCATCAACTGCTGTACACAGC
ACTTCATGTTTGATTTGTTTTACACTTCGGGCTGAAGAGCACGCCGGCCA
CAGTGCAACTTTTCGCTCCCAAGAGAGACACCGACGCCCGCCGCCTGCCA
CGAAGTGGATCGTGCCTGCTGAGGTGGCCGGCTTCCGTCGGGAGATCGGC
TTGCGTCTCAGCCCCCTTGTTCTCGTTTTTTGCAGACATTGAAAGGGTCA
ATCGAGGCACGGCCTGCTGTCCCGGCGGCGGGTCGTCCTCGTACAAGGCT
CGGCTTGTATCTCAGTTATATTTACCCATCACTTTGCCTCGACACGCCCC
GCTCCTCCTCACTCCCTACAACGAGCGAGAAAGATGCCTTCGTCCACGAA
AAAAGCACGCCAGACGCCGACGTTCCCGACGGTGGTGGATATTCTGATCC
GCCTAAAAACTTTCGTCGACAGTGAGAGCTACCTATCCTTCGCGTGTGTC
GACCGCGATTGGAACAGGGCGTGGGGCTCTTCGCCCAAGACCACGAGGTG
CCCAGTTCGCGAAACCACTGTCGATATGCTTCACGAGTGCTTCGACCACG
GTCTGTGCAGGCGAAGCTTCCGAGTCTGTGCGGAGATCGCGTCGCTGGAC
AGACTCGATCTATTTCAAGAGGCCGTCTCCGCGGGATGCGTCGTCGGCAG
CGAGGCTTGTGAAACCGCGGCCATGGTCGGATCATTGGGCATCTTGAAGG
TAGCGGTGGACCGTGGTGGTGCGATTTTGGACGTGCACACGGGCTACGGT
GCCGCCGCGGGTGGTCACCTCAACATCATGAGATATCTCAATGCGCAAGC
CTGCCCGATGGGACCACATGTTTACGGCATTGCCGCCGAGTGTATTTGGG
TGTTTCCTAGCCCTTTTTTCTTATTTTCGCAAAAAGTTGAGCCTTTTTTT
GTCAATTAACGGAATTTTTCTTAACTGCGGGCCCGTACTACTGTACAACA
ACTACCGCTTGTCTCAATCGTCGCTACGAGCGAACGCACGACGCTGAATC
TCGGTGATAATATCAGCGAGCCCGACCCTCTCCCTGGTTTCGTACAATCC
AACTTTTTCGTACGCCTCCTTCAACGTCATGACGATGTCCAATTCGGCCA
TGACGCGTTGTTTAGCGAGTTCGAGATCGTTTTTCCTCGCGAGCATTGCC
AACTCGTGTTGCACCACCATGTTGAAGTACGCGTGGCAGTCGCTGTCGGT
GGCGTGATCGAAGATAGGATGACCAATGCGAGCCCTCTTCGCCTCGCGCT
GTCGGGTGGACGATCTGGTGTCCATGGTGGTATTGTGTGCATGGAAACAC
GTGTTCCTACTCGCAAGTTTGGCGTAAATATTGCTCTCATGACGCGCCAT
CGCCCGCCCCTGTTTCAATGGCGCATGTACCCCAAACACTTCGCGATCAA
AGGTCCCGGGCGGCGCCGCCCGATGGAGGGAGGGAGAAAGGGAGAGAGAG
AGAGAGAGATCAGCCACCGAAACACGATTGACGACGCCGCCTTTCAGGCT
TGTCTCGGGACTTTGATCACCCTTGTAACAAGGCGAGGAAAAAAGGGCTC
ATCAGGCTCAGAGCCGGAGAGAAAAGGTATGGCAGACTCTGTGTAGGGTT
GGAAGTTTGCGGAAGGGGTAATTTTCTTTTCTTTCCTGTACCACAATCCA
CAAGTCAAACGCTTGTTTGTTTTCCAGACTCTGCGGGAAGGGAGGGAGCG
ATGCAAGGAGGAAGCTAATTAAAAAGCGATAGAAGCATGCGCCAAGTTTG
CGATCGATCGAGGCCAGAAGGAAAACCTCCAGGTGAGACCAGTTTTACAC
GGCAAGCCCCCGCAGGCGCAGTTCTGGGCCGACAAACTACTGAGTTTTTG
TGGCCAGCCGGAGCGCGCTAAAGTAGCACGAATTTGACGATCGGCCCCGC
CTGTACCGCGCGCGCCCGACGGCGACCACACCCCTCGCAATGCGCCATCG
CCAGCCAACCTACCCTCTGTTTCTGCGGCGATTAATGGTCCTGACTGGCT
GCCTTGCTCGTTGGAATTTGAACAGGTGCTCCACGCTACACCCCCCGTCA
CCCAGATCACCACCGTCGCGAGCATGTGTTAAAGACGTGTTTCGCATGTA
TCGGCCCCGCTCTTGTGGTCTTTAGAGCGAGTTGGGTAGTCAAGATGGCC
CGTGTCCTCTTTCAGGGGACATAGGAAGGAGGGCGTGTAATCAAGGGCGA
TGGCGAAGGAGATTTCGGGAGTGCGACAAGCGTAGTGATGGAAGCGATTT
GGTTTTGGTCGAGACTCTAGGCAGCTTCATTTGGCGATAACTCTCCCCAT
CACCGGCCATACTTTTTTGACGTTTGCGGGACTTTGTCGTGTAAGGTGTG
AGTGTAAGTTTCATATTGCCCATCGGTTGGGGCAATGTTGGCATTTCACA
TTAAAAATGGTCCCGACCTCTGCCCAATACTTTCGTCCTGCACACAGATT
CAACCGACCAGACACCCCCCCGTGAGTTATCTTAAAACCAGACAAAAAGG
AGGGGATTCATCTTCATCAGCAACAATCGGAGCCGATCGCCCCTACTGGA
AAACAAAAAAAAAAACAGGCGAGGCACCCCCACGTGGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:237550..240288-

>mRNA_P-fluviatile_contig21.4474.1 ID=mRNA_P-fluviatile_contig21.4474.1|Name=mRNA_P-fluviatile_contig21.4474.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=960bp|location=Sequence derived from alignment at P-fluviatile_contig21:237550..240288- (Porterinema fluviatile SAG_2381)
ATGCCTTCGTCCACGAAAAAAGCACGCCAGACGCCGACGTTCCCGACGGT
GGTGGATATTCTGATCCGCCTAAAAACTTTCGTCGACAGTGAGAGCTACC
TATCCTTCGCGTGTGTCGACCGCGATTGGAACAGGGCGTGGGGCTCTTCG
CCCAAGACCACGAGGTGCCCAGTTCGCGAAACCACTGTCGATATGCTTCA
CGAGTGCTTCGACCACGGTCTGTGCAGGCGAAGCTTCCGAGTCTGTGCGG
AGATCGCGTCGCTGGACAGACTCGATCTATTTCAAGAGGCCGTCTCCGCG
GGATGCGTCGTCGGCAGCGAGGCTTGTGAAACCGCGGCCATGGTCGGATC
ATTGGGCATCTTGAAGATGCCTTCGTCCACGAAAAAAGCACGCCAGACGC
CGACGTTCCCGACGGTGGTGGATATTCTGATCCGCCTAAAAACTTTCGTC
GACAGTGAGAGCTACCTATCCTTCGCGTGTGTCGACCGCGATTGGAACAG
GGCGTGGGGCTCTTCGCCCAAGACCACGAGGTGCCCAGTTCGCGAAACCA
CTGTCGATATGCTTCACGAGTGCTTCGACCACGGTCTGTGCAGGCGAAGC
TTCCGAGTCTGTGCGGAGATCGCGTCGCTGGACAGACTCGATCTATTTCA
AGAGGCCGTCTCCGCGGGATGCGTCGTCGGCAGCGAGGCTTGTGAAACCG
CGGCCATGGTCGGATCATTGGGCATCTTGAAGGTCCCGGGCGGCGCCGCC
CGATGGAGGGAGGGAGAAAGGGAGAGAGAGAGAGAGAGATCAGCCACCGA
AACACGATTGACGACGCCGCCTTTCAGGCTTGTCTCGGGACTTTGAGTCC
CGGGCGGCGCCGCCCGATGGAGGGAGGGAGAAAGGGAGAGAGAGAGAGAG
AGATCAGCCACCGAAACACGATTGACGACGCCGCCTTTCAGGCTTGTCTC
GGGACTTTGA
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