prot_P-fluviatile_contig1.407.1 (polypeptide) Porterinema fluviatile SAG_2381

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-fluviatile_contig1.407.1
Unique Nameprot_P-fluviatile_contig1.407.1
Typepolypeptide
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Sequence length233
Homology
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A6H5K2C5_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 292 bits (747), Expect = 4.730e-96
Identity = 144/182 (79.12%), Postives = 159/182 (87.36%), Query Frame = 0
Query:    3 PMDSGSGGASDPFESDPREVDPTLQGSAGDHYVKCGKCQACYPMQLEVLGRGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEERAKQAAEAVKRFAGFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKVGASNSAG 184
            PMD G    ++P E DPRE+DP+LQGSAGD YVKCGKCQACYPM+L+VLGRGRIIECSVCGN+WFQTAERALTLTENFLMK WTE+R    AEA K FAGF LFVGNIP SVSEKDLGAIFGNFGE+ S +LVTD +GDS+GYG +KMG+ EDG KAIKALNGIEIQG+SMLVKVGASNSAG
Sbjct:  117 PMDFGG---AEPAEKDPREMDPSLQGSAGDTYVKCGKCQACYPMELDVLGRGRIIECSVCGNRWFQTAERALTLTENFLMKDWTEDRVAATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNSAG 295          
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: I2CR05_NANGC (RRM domain-containing protein (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CR05_NANGC)

HSP 1 Score: 109 bits (273), Expect = 3.110e-25
Identity = 63/193 (32.64%), Postives = 107/193 (55.44%), Query Frame = 0
Query:   23 DPTLQGSAGDHYVKCGKCQACYPMQLEVLG-RGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEERAKQAAEAVKRF----------AGFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKVGASNS-------------AGGGGRGGS 191
            DP +Q     ++V+CG+C A Y +  +++   G  ++C VCG+ WFQ + R   L+  +++K + E+  ++ AE V+                +FVGN+P S++E D+  +F   G ++S ++V D    SKG+GF++M   E+G +AI AL+G E+ G+ + V++G S +             AGGGG GGS
Sbjct:  101 DPNVQ-----YFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGGS 288          
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A7S3TR26_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TR26_EMIHU)

HSP 1 Score: 103 bits (257), Expect = 1.030e-23
Identity = 61/178 (34.27%), Postives = 93/178 (52.25%), Query Frame = 0
Query:   17 SDPREVDPTLQGSAGDHYVKCGKCQACYPMQLEVLGRGRIIEC--SVCGNKWFQTAERALTLTENFLMKGWTEER-----AKQAAEAVKRFAGFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKVGASNSAGGGG 187
            S PR     +Q  A   +V C +C+A + +       GR + C  + C ++WFQTA+R  TL     +  + +E      A ++AE V RF    +FVGN+  SV+E DL  +F   G +    ++TD  G  +G+GF+ M     G +A+K L+G E+QG+S+ V  G  N  G GG
Sbjct:   19 SSPRHESALMQTKAPSKFVTCARCKATFEVDEADFATGRQVRCGGTGCDHEWFQTADRLQTLPNGMELVEYPQEMKDRIAAGKSAEPVGRF---NIFVGNLAYSVAEDDLREVFEGIGSVAKVIIMTDDDGRPRGFGFVNMEEEAAGARAVKELDGYELQGRSITVSEGKQNDRGRGG 193          
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A7R9WVI4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVI4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.470e-20
Identity = 51/151 (33.77%), Postives = 87/151 (57.62%), Query Frame = 0
Query:   34 YVKCGKCQACYPMQLEVLG--RGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEERAKQAAEAVK-----RFAG-FELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVK 176
            Y +CG+C   + +  + LG  RGR +ECSVCG+ W+Q+ +R   +   F +    E   ++ A  ++     +F G  +L+VGNI  + +E+D+   F   G++   SLV D  G ++G+GFI M + E G KAI+ L+G  + G+++ V+
Sbjct:   71 YARCGRCDTSFALAPDDLGNGRGRRLECSVCGHTWYQSKDRLSNMNGGFEIIDLPETDLQRIANNIEEGRSPKFVGEMKLYVGNIAFTCTEQDMQEAFSEAGDVGEVSLVRDDEGRNRGFGFITMRTKEGGEKAIELLDGASVNGRNIAVR 221          
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: L1IF02_GUITC (RRM domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IF02_GUITC)

HSP 1 Score: 95.1 bits (235), Expect = 2.530e-20
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 0
Query:   34 YVKCGKCQACYPMQLEVLGR-GRIIECSVCGNKWFQTAER-----ALTLTENFLMKGWTEERAKQAAEAVKRF-----AGFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAH-GDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKV 177
            Y  CGKC A Y +    LG  G+ ++CSVC NKWFQ+A R     A +    F +  W ++    +    K+F       F LFVGN+P  +SE +L A+F   GE++S SL+ D   G  +G+GF+   + +    A+  LNG+ + G+ + V +
Sbjct:   55 YTTCGKCGAVYVINPADLGSDGQKVQCSVCNNKWFQSAARLAEAPAGSTFRAFPVSNWQKQDQANSQGGEKKFRHDRKGAFTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQSAKDAVSNLNGMPLDGREISVSI 210          
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A6V2PYU0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PYU0_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 5.170e-20
Identity = 51/152 (33.55%), Postives = 86/152 (56.58%), Query Frame = 0
Query:   34 YVKCGKCQACYPMQLEVLG---RGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEERAKQ-----AAEAVKRFAG-FELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVK 176
            Y +CG+C   + +  E LG   +GR +ECSVCG+ W+Q  ++   + E F +    +    +     AA+   RF G  +L+VGN+   V+E+DL   F    E+   +++TD  G SKG+ F+ M + E G KA++ L+G E+ G+++ V+
Sbjct:   66 YARCGRCSTSFALTSEDLGDRGKGRRVECSVCGHSWYQARDKLFDIREGFELVELPQSDVSRIERNIAADRDPRFTGDSKLYVGNLDFKVTEEDLFEEFSKVDEVGDVTIITDDSGRSKGFAFVTMLTKEGGEKALEKLDGEEVFGRNLNVR 217          
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A7S1Z4Z8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4Z8_TRICV)

HSP 1 Score: 92.8 bits (229), Expect = 2.580e-19
Identity = 54/152 (35.53%), Postives = 88/152 (57.89%), Query Frame = 0
Query:   34 YVKCGKCQACYPMQLEVLG---RGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEE---RAKQAAEAVKR--FAGF-ELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVK 176
            YV+CG+C A Y +Q + LG   +GR +ECSVCG+ W+Q+ +R   L+  F  + + +    R K   EA +   F G  + +VGN+     E+ +   F   G +   SL+TD  G S+G+ F+ M + EDG KA++ L+G E+ G+++ V+
Sbjct:   80 YVQCGRCHAAYAIQEDDLGDRGKGRRVECSVCGHSWYQSRDRLFGLSTGFEYRPFPQSDVVRVKSNLEAGRPADFRGVAKFYVGNLDYGTDEESVRVHFETAGTVGDVSLITDEDGRSRGFAFVTMMTEEDGEKAVQ-LDGTELAGRNISVR 230          
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A519E0E8_9BURK (RNA-binding protein n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519E0E8_9BURK)

HSP 1 Score: 73.2 bits (178), Expect = 5.440e-13
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 0
Query:  104 ELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAH-GDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKVGASNSAG--GGGRGG 190
            +++VGN+P SV++  L + FG  G + SA ++TD   G+SKG+GF++M SAED   AI ALNG+++ G+S++V +      G  GG RGG
Sbjct:    4 KIYVGNLPYSVTDASLRSNFGEHGSVKSAKVMTDRDTGNSKGFGFVEMASAEDAQAAITALNGMQVDGRSIVVSLARPREGGNDGGSRGG 93          
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A1F9K4R1_9DELT (RRM domain-containing protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9K4R1_9DELT)

HSP 1 Score: 71.2 bits (173), Expect = 1.580e-12
Identity = 36/75 (48.00%), Postives = 54/75 (72.00%), Query Frame = 0
Query:  102 GFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDA-HGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLV 175
            G +L+VGNIP SV+E+ L  +F   G ++SA ++TD   G SKG+GF++MGS  +  +A  ALNGIE +G+S++V
Sbjct:    2 GPQLYVGNIPFSVTEEKLKELFSRHGSVVSARIITDKLTGRSKGFGFVEMGSGAEAERATVALNGIEFEGRSIVV 76          
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: UPI0013D4CFC3 (RNA-binding protein n=1 Tax=Bacteroides sp. 51 TaxID=2302938 RepID=UPI0013D4CFC3)

HSP 1 Score: 71.6 bits (174), Expect = 1.610e-12
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 0
Query:  105 LFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAH-GDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKVGA--------SNSAGGGGRGGSF 192
            +FV  +   +SE +LG +F  +GEI+S  +VTD   G SKGYGF++M   E G KAI+ALNG+EI G+++ V V          +N  GGGG  G +
Sbjct:    3 IFVAGLNYKISEAELGDMFAEYGEIVSVKIVTDRETGRSKGYGFVEMAEDEAGNKAIEALNGVEIDGRTIAVSVARPREEAPRRNNYGGGGGNRGGY 99          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2C5_9PHAE4.730e-9679.12RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
I2CR05_NANGC3.110e-2532.64RRM domain-containing protein (Fragment) n=3 Tax=M... [more]
A0A7S3TR26_EMIHU1.030e-2334.27Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7R9WVI4_9STRA1.470e-2033.77Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
L1IF02_GUITC2.530e-2034.62RRM domain-containing protein n=1 Tax=Guillardia t... [more]
A0A6V2PYU0_9STRA5.170e-2033.55Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1Z4Z8_TRICV2.580e-1935.53Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A519E0E8_9BURK5.440e-1344.44RNA-binding protein n=1 Tax=Rubrivivax sp. TaxID=5... [more]
A0A1F9K4R1_9DELT1.580e-1248.00RRM domain-containing protein n=2 Tax=unclassified... [more]
UPI0013D4CFC31.610e-1243.30RNA-binding protein n=1 Tax=Bacteroides sp. 51 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 104..176
e-value: 9.8E-21
score: 84.9
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 105..172
e-value: 9.1E-19
score: 67.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 103..180
score: 17.984
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 82..198
e-value: 9.1E-23
score: 82.7
NoneNo IPR availablePANTHERPTHR23003RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEINcoord: 92..219
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 103..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4643275..4646783 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.407.1mRNA_P-fluviatile_contig1.407.1Porterinema fluviatile SAG_2381mRNAP-fluviatile_contig1 4642890..4648191 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-fluviatile_contig1.407.1 ID=prot_P-fluviatile_contig1.407.1|Name=mRNA_P-fluviatile_contig1.407.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=233bp
MVPMDSGSGGASDPFESDPREVDPTLQGSAGDHYVKCGKCQACYPMQLEV
LGRGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEERAKQAAEAVKRF
AGFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKM
GSAEDGLKAIKALNGIEIQGKSMLVKVGASNSAGGGGRGGSFQGRGGGSM
GGRGRGGGGGGGYQGGRGGGGYSGGGSYSPGF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf