mRNA_P-fluviatile_contig1.407.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.407.1
Unique NamemRNA_P-fluviatile_contig1.407.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A6H5K2C5_9PHAE (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K2C5_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 9.830e-94
Identity = 148/189 (78.31%), Postives = 164/189 (86.77%), Query Frame = 2 
Query:  209 SALSMVP-MDSGSGGASDPFESDPREVDPTLQGSAGDHYVKCGKCQACYPMQLEVLGRGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEERAKQAAEAVKRFAGFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKVGASNSAG 772
            +ALSM P MD G    ++P E DPRE+DP+LQGSAGD YVKCGKCQACYPM+L+VLGRGRIIECSVCGN+WFQTAERALTLTENFLMK WTE+R    AEA K FAGF LFVGNIP SVSEKDLGAIFGNFGE+ S +LVTD +GDS+GYG +KMG+ EDG KAIKALNGIEIQG+SMLVKVGASNSAG
Sbjct:  110 TALSMAPPMDFG---GAEPAEKDPREMDPSLQGSAGDTYVKCGKCQACYPMELDVLGRGRIIECSVCGNRWFQTAERALTLTENFLMKDWTEDRVAATAEAAKNFAGFNLFVGNIPFSVSEKDLGAIFGNFGEVKSTALVTDENGDSRGYGSVKMGTEEDGRKAIKALNGIEIQGRSMLVKVGASNSAG 295
[Close]
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: I2CR05_NANGC (RRM domain-containing protein (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CR05_NANGC)

HSP 1 Score: 109 bits (273), Expect = 1.590e-23
Identity = 63/193 (32.64%), Postives = 107/193 (55.44%), Query Frame = 2 
Query:  287 DPTLQGSAGDHYVKCGKCQACYPMQLEVLG-RGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEERAKQAAEAVKRF----------AGFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKVGASNS-------------AGGGGRGGS 793
            DP +Q     ++V+CG+C A Y +  +++   G  ++C VCG+ WFQ + R   L+  +++K + E+  ++ AE V+                +FVGN+P S++E D+  +F   G ++S ++V D    SKG+GF++M   E+G +AI AL+G E+ G+ + V++G S +             AGGGG GGS
Sbjct:  101 DPNVQ-----YFVRCGRCNAAYAVGADLVRPEGGRVKCEVCGHTWFQASNRLQVLSPGYVLKDYPEDLKEKVAENVRNNRHPLDTSAAKGAISVFVGNLPFSMAEADVQEMFSEHGGVVSVTIVKDQLNRSKGFGFVEMADKEEGERAIAALDGREMDGRPINVRLGTSKAQPRMRKERTQMKRAGGGGSGGS 288
[Close]
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A7S3TR26_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3TR26_EMIHU)

HSP 1 Score: 103 bits (256), Expect = 5.460e-22
Identity = 61/178 (34.27%), Postives = 93/178 (52.25%), Query Frame = 2 
Query:  269 SDPREVDPTLQGSAGDHYVKCGKCQACYPMQLEVLGRGRIIEC--SVCGNKWFQTAERALTLTENFLMKGWTEER-----AKQAAEAVKRFAGFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKVGASNSAGGGG 781
            S PR     +Q  A   +V C +C+A + +       GR + C  + C ++WFQTA+R  TL     +  + +E      A ++AE V RF    +FVGN+  SV+E DL  +F   G +    ++TD  G  +G+GF+ M     G +A+K L+G E+QG+S+ V  G  N  G GG
Sbjct:   19 SSPRHESALMQTKAPSKFVTCARCKATFEVDEADFATGRQVRCGGTGCDHEWFQTADRLQTLPNGMELVEYPQEMKDRIAAGKSAEPVGRF---NIFVGNLAYSVAEDDLREVFEGIGSVAKVIIMTDDDGRPRGFGFVNMEEEAAGARAVKELDGYELQGRSITVSEGKQNDRGRGG 193
[Close]
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A7R9WVI4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WVI4_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 3.910e-19
Identity = 51/151 (33.77%), Postives = 87/151 (57.62%), Query Frame = 2 
Query:  320 YVKCGKCQACYPMQLEVLG--RGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEERAKQAAEAVK-----RFAG-FELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVK 748
            Y +CG+C   + +  + LG  RGR +ECSVCG+ W+Q+ +R   +   F +    E   ++ A  ++     +F G  +L+VGNI  + +E+D+   F   G++   SLV D  G ++G+GFI M + E G KAI+ L+G  + G+++ V+
Sbjct:   71 YARCGRCDTSFALAPDDLGNGRGRRLECSVCGHTWYQSKDRLSNMNGGFEIIDLPETDLQRIANNIEEGRSPKFVGEMKLYVGNIAFTCTEQDMQEAFSEAGDVGEVSLVRDDEGRNRGFGFITMRTKEGGEKAIELLDGASVNGRNIAVR 221
[Close]
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: L1IF02_GUITC (RRM domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IF02_GUITC)

HSP 1 Score: 95.1 bits (235), Expect = 6.470e-19
Identity = 54/156 (34.62%), Postives = 83/156 (53.21%), Query Frame = 2 
Query:  320 YVKCGKCQACYPMQLEVLGR-GRIIECSVCGNKWFQTAER-----ALTLTENFLMKGWTEERAKQAAEAVKRF-----AGFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAH-GDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKV 751
            Y  CGKC A Y +    LG  G+ ++CSVC NKWFQ+A R     A +    F +  W ++    +    K+F       F LFVGN+P  +SE +L A+F   GE++S SL+ D   G  +G+GF+   + +    A+  LNG+ + G+ + V +
Sbjct:   55 YTTCGKCGAVYVINPADLGSDGQKVQCSVCNNKWFQSAARLAEAPAGSTFRAFPVSNWQKQDQANSQGGEKKFRHDRKGAFTLFVGNLPFRISEAELQALFEKHGEVVSVSLIHDQESGRPRGFGFVDYDNEQSAKDAVSNLNGMPLDGREISVSI 210
[Close]
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A6V2PYU0_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2PYU0_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.270e-18
Identity = 51/152 (33.55%), Postives = 86/152 (56.58%), Query Frame = 2 
Query:  320 YVKCGKCQACYPMQLEVLG---RGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEERAKQ-----AAEAVKRFAG-FELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVK 748
            Y +CG+C   + +  E LG   +GR +ECSVCG+ W+Q  ++   + E F +    +    +     AA+   RF G  +L+VGN+   V+E+DL   F    E+   +++TD  G SKG+ F+ M + E G KA++ L+G E+ G+++ V+
Sbjct:   66 YARCGRCSTSFALTSEDLGDRGKGRRVECSVCGHSWYQARDKLFDIREGFELVELPQSDVSRIERNIAADRDPRFTGDSKLYVGNLDFKVTEEDLFEEFSKVDEVGDVTIITDDSGRSKGFAFVTMLTKEGGEKALEKLDGEEVFGRNLNVR 217
[Close]
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A7S1Z4Z8_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z4Z8_TRICV)

HSP 1 Score: 92.8 bits (229), Expect = 5.910e-18
Identity = 54/152 (35.53%), Postives = 88/152 (57.89%), Query Frame = 2 
Query:  320 YVKCGKCQACYPMQLEVLG---RGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEE---RAKQAAEAVKR--FAGF-ELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVK 748
            YV+CG+C A Y +Q + LG   +GR +ECSVCG+ W+Q+ +R   L+  F  + + +    R K   EA +   F G  + +VGN+     E+ +   F   G +   SL+TD  G S+G+ F+ M + EDG KA++ L+G E+ G+++ V+
Sbjct:   80 YVQCGRCHAAYAIQEDDLGDRGKGRRVECSVCGHSWYQSRDRLFGLSTGFEYRPFPQSDVVRVKSNLEAGRPADFRGVAKFYVGNLDYGTDEESVRVHFETAGTVGDVSLITDEDGRSRGFAFVTMMTEEDGEKAVQ-LDGTELAGRNISVR 230
[Close]
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: R7QQ59_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QQ59_CHOCR)

HSP 1 Score: 85.9 bits (211), Expect = 4.320e-15
Identity = 51/188 (27.13%), Postives = 86/188 (45.74%), Query Frame = 2 
Query:  317 HYVKCGKCQACYPMQLEVLG-RGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEERAKQAAEAVKR--------------------------------------FAGFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKVGASN 763
            ++ KCG CQA Y +  +  G RG+ + CSVCGN+WFQ A+R +TL +    K +  ++  +  E  ++                                      F+   LF+GN+P +  ++DL  + G   E    +++ D  G SKG+ F  + S E    A+  L+G E+ G+++ V+ G  N
Sbjct:  105 YFTKCGSCQAAYKLDPDFPGPRGKKVACSVCGNQWFQRADRLMTLRQGDQFKEYPVDQKDELMEKQQQLRMERFRARSNDGGDRRGGYRRDGPREGQGARRSNSRNFSPHSLFIGNLPFNTEQEDLERVVGQVVEFTRVAIIRDPTGRSKGFAFADVKSEEAVQMAVSKLDGKELGGRAITVREGRKN 292
[Close]
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A519E0E8_9BURK (RNA-binding protein n=1 Tax=Rubrivivax sp. TaxID=50259 RepID=A0A519E0E8_9BURK)

HSP 1 Score: 73.2 bits (178), Expect = 3.950e-12
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 2 
Query:  530 ELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAH-GDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLVKVGASNSAG--GGGRGG 790
            +++VGN+P SV++  L + FG  G + SA ++TD   G+SKG+GF++M SAED   AI ALNG+++ G+S++V +      G  GG RGG
Sbjct:    4 KIYVGNLPYSVTDASLRSNFGEHGSVKSAKVMTDRDTGNSKGFGFVEMASAEDAQAAITALNGMQVDGRSIVVSLARPREGGNDGGSRGG 93
[Close]
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Match: A0A1F9K4R1_9DELT (RRM domain-containing protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9K4R1_9DELT)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-11
Identity = 36/75 (48.00%), Postives = 54/75 (72.00%), Query Frame = 2 
Query:  524 GFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDA-HGDSKGYGFIKMGSAEDGLKAIKALNGIEIQGKSMLV 745
            G +L+VGNIP SV+E+ L  +F   G ++SA ++TD   G SKG+GF++MGS  +  +A  ALNGIE +G+S++V
Sbjct:    2 GPQLYVGNIPFSVTEEKLKELFSRHGSVVSARIITDKLTGRSKGFGFVEMGSGAEAERATVALNGIEFEGRSIVV 76
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.407.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2C5_9PHAE9.830e-9478.31RRM domain-containing protein n=2 Tax=Ectocarpus T... [more]
I2CR05_NANGC1.590e-2332.64RRM domain-containing protein (Fragment) n=3 Tax=M... [more]
A0A7S3TR26_EMIHU5.460e-2234.27Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7R9WVI4_9STRA3.910e-1933.77Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
L1IF02_GUITC6.470e-1934.62RRM domain-containing protein n=1 Tax=Guillardia t... [more]
A0A6V2PYU0_9STRA1.270e-1833.55Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1Z4Z8_TRICV5.910e-1835.53Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
R7QQ59_CHOCR4.320e-1527.13RRM domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A519E0E8_9BURK3.950e-1244.44RNA-binding protein n=1 Tax=Rubrivivax sp. TaxID=5... [more]
A0A1F9K4R1_9DELT1.010e-1148.00RRM domain-containing protein n=2 Tax=unclassified... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4642890..4648191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.7
Seed ortholog evalue1.5e-76
Seed eggNOG ortholog2880.D7G7E1
KEGG rclassRC00331,RC00418,RC02600
KEGG koko:K17989
KEGG ReactionR00220,R00590,R00996
KEGG Pathwayko00260,ko00270,ko00290,ko01100,ko01110,ko01130,ko01200,ko01230,map00260,map00270,map00290,map01100,map01110,map01130,map01200,map01230
KEGG ModuleM00570
EggNOG free text desc.RNA binding
EggNOG OGsKOG0145@1,KOG0145@2759
EC4.3.1.17,4.3.1.19
COG Functional cat.DU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNucleotide-binding alpha-beta plait domain
Ec32 orthologEc-04_003170.1
Exons7
Model size1304
Cds size699
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815331.5675454-UTR-P-fluviatile_contig1:4642889..46432741622815331.5675454-UTR-P-fluviatile_contig1:4642889..4643274Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4642890..4643274 -
1693561524.7763455-UTR-P-fluviatile_contig1:4642889..46432741693561524.7763455-UTR-P-fluviatile_contig1:4642889..4643274Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4642890..4643274 -
1622815331.6467638-UTR-P-fluviatile_contig1:4646783..46469201622815331.6467638-UTR-P-fluviatile_contig1:4646783..4646920Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4646784..4646920 -
1693561524.9628549-UTR-P-fluviatile_contig1:4646783..46469201693561524.9628549-UTR-P-fluviatile_contig1:4646783..4646920Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4646784..4646920 -
1622815331.6560752-UTR-P-fluviatile_contig1:4648108..46481911622815331.6560752-UTR-P-fluviatile_contig1:4648108..4648191Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4648109..4648191 -
1693561524.9732237-UTR-P-fluviatile_contig1:4648108..46481911693561524.9732237-UTR-P-fluviatile_contig1:4648108..4648191Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4648109..4648191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815331.579262-CDS-P-fluviatile_contig1:4643274..46434641622815331.579262-CDS-P-fluviatile_contig1:4643274..4643464Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4643275..4643464 -
1693561524.8817651-CDS-P-fluviatile_contig1:4643274..46434641693561524.8817651-CDS-P-fluviatile_contig1:4643274..4643464Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4643275..4643464 -
1622815331.5883934-CDS-P-fluviatile_contig1:4643885..46439471622815331.5883934-CDS-P-fluviatile_contig1:4643885..4643947Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4643886..4643947 -
1693561524.8924105-CDS-P-fluviatile_contig1:4643885..46439471693561524.8924105-CDS-P-fluviatile_contig1:4643885..4643947Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4643886..4643947 -
1622815331.5994215-CDS-P-fluviatile_contig1:4644482..46445781622815331.5994215-CDS-P-fluviatile_contig1:4644482..4644578Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4644483..4644578 -
1693561524.9015849-CDS-P-fluviatile_contig1:4644482..46445781693561524.9015849-CDS-P-fluviatile_contig1:4644482..4644578Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4644483..4644578 -
1622815331.6085408-CDS-P-fluviatile_contig1:4645099..46452011622815331.6085408-CDS-P-fluviatile_contig1:4645099..4645201Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4645100..4645201 -
1693561524.9113414-CDS-P-fluviatile_contig1:4645099..46452011693561524.9113414-CDS-P-fluviatile_contig1:4645099..4645201Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4645100..4645201 -
1622815331.6183937-CDS-P-fluviatile_contig1:4645529..46456311622815331.6183937-CDS-P-fluviatile_contig1:4645529..4645631Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4645530..4645631 -
1693561524.9277327-CDS-P-fluviatile_contig1:4645529..46456311693561524.9277327-CDS-P-fluviatile_contig1:4645529..4645631Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4645530..4645631 -
1622815331.6290288-CDS-P-fluviatile_contig1:4646636..46467831622815331.6290288-CDS-P-fluviatile_contig1:4646636..4646783Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4646637..4646783 -
1693561524.9459226-CDS-P-fluviatile_contig1:4646636..46467831693561524.9459226-CDS-P-fluviatile_contig1:4646636..4646783Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4646637..4646783 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.407.1prot_P-fluviatile_contig1.407.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4643275..4646783 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.407.1

>prot_P-fluviatile_contig1.407.1 ID=prot_P-fluviatile_contig1.407.1|Name=mRNA_P-fluviatile_contig1.407.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=233bp
MVPMDSGSGGASDPFESDPREVDPTLQGSAGDHYVKCGKCQACYPMQLEV
LGRGRIIECSVCGNKWFQTAERALTLTENFLMKGWTEERAKQAAEAVKRF
AGFELFVGNIPLSVSEKDLGAIFGNFGEIMSASLVTDAHGDSKGYGFIKM
GSAEDGLKAIKALNGIEIQGKSMLVKVGASNSAGGGGRGGSFQGRGGGSM
GGRGRGGGGGGGYQGGRGGGGYSGGGSYSPGF*
back to top

mRNA from alignment at P-fluviatile_contig1:4642890..4648191-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.407.1 ID=mRNA_P-fluviatile_contig1.407.1|Name=mRNA_P-fluviatile_contig1.407.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5302bp|location=Sequence derived from alignment at P-fluviatile_contig1:4642890..4648191- (Porterinema fluviatile SAG_2381)
CTCACTGATCCGGCCGACTCATGATCGCTCGGTTGCGACGTCCCCGCAGG
GCAACCCTCCGTCATGTCGCAACAACCCAGCAGGTACTGATCGACCAACT
GTGACTTTGGTCCTCAGCTGCTAGTCGGAGTGTAATCGGATATATTCCCG
CGAGAGAGACGGAGGTGGTGTGTGCTTTTCAAGTGTTTTGAAGGCGTGGT
TCAGCGCTCGCTGTCTGAGAGGCCCACCGCGGGTGCTGAGACTGCTGTGG
TACTGCTGTTGTACAGCTGGCTCGTAGGACTGTGTTGTGGACATTGTCCG
GCTAATCGCGCGTCCGGCCCTGTTCTTCCGGGTCACAGAGCGCAGAATTG
AGCACACGTAATTCACGGCAGGAGCGAACGAGTTGTATCGAGCACAGCAC
GCATACACTGCTGCTGCCAGCTGGTCCACAGCATACTACTGCCGTCGTAA
TTATCAACACACAATATGCCGTAGATGTATGCAGTACGTAGTACTCGGAG
TGTATAATATGGTGAGTAGGTTCGCTGCGAGTGGGAAACGTTGTCGAGGA
TTGCGACTGTGCTCATGGCTGCATCCGCGCCTCTCAACTGACTCCGCAGC
CTGTTGAGTTTCTTCCTCTGAGACATGTGGACAACAGCCATGTTGCCACC
ACCCTGTCATGTACATTGTGTGCCGTTGCCGGTGATTCCAGCCGTTATCC
AGCCTTTATCCTCAGAAGCATCAAATAAGCGGAGTTCGAGACAAGTTTAG
TTTTCAAGACGCAGCTTTCGAAGCATGACTCCACGTTCGAGACAAGTTTA
CTTTTAGACACGCAGTTTTCGTAGCGAAATGTTTCAATGAAATGTTTCAC
TGCTGTTGTACCGTCCTTGCCACAGATATACACTTTCTTCACTTTAGGTG
CTGACACCTATGGAGACCAAGTTCAAACGCGTTCGGAACAGCTGTTGTTT
CCTGAACCCGCTGCAACGGAGTCCGTGAGCGATCGCAGGTTTAAAAAGAA
GTGGTAACCGGCCGATTCGCCTTGCGTCGTTGTGTCCGTGGTGAACACGC
GTGAAATGAAATGTTGGCATCATGACCGCAGCAGGAACGGAGAAGCGGTC
GTGCCTCTTCTTCCGCGCTCGCTCCATTTCTACCTAGAAAAAGAAGGCTT
CCCTCCGCTGCCTGCCCGGTGATTGAAAGACCGCGCAACCACGAGCGCGC
AGACATACAATATGGCTGAGATCCCATTTCCTACACACGGAATCAATACG
CGAAACTGTGTTTCCGGTCAGGAACAACATTAAGGGCATCAGCACCATCT
ACACCAGCGTCGGTCTCGTTGTCGCTCAAGGATCGTCGGAGAAGAGCATT
ACCGACGTCCTCCTCGTCTACGTCGCCATCATCCTCCTCGTTGCACTCCG
CGCTGTCCATGGTGCCGATGGATTCCGGCTCCGGGGGCGCGTCCGACCCG
TTCGAGAGTGACCCGAGGGAGGTGGATCCGACCCTCCAGGGCAGCGCCGG
GGACCACTACGTCAAGTGCGGGAAGTGCCAGGCCTGCTACCCCATGCAGC
TCGAGGTGCGTCGTTTTTCGTTTTCCCCCCATTTATTTTTTTTTCAGGCG
CGAGTCATTCGAGAATACAGGAAGTCTCCTCTCTGTAGGATGCGTAAAAA
CTGTCCTCTTCTTAGAAGGGTAGGTTGCGTAGAAATTGTCCAACTTACAG
AGAAAGGGAGGGATGGGGGAAGGAGAAGGAGATGAGGAGAGACGGAGAGG
AAGAAACACCAGCGAAGTAGCCCGCGTACGTCAGGCTATCAAGCTCGCTC
GATCCCTTCGGAACGGAAGAGTTCAAGCACAGAAAAGGAAGGACACTAAT
GCGTGCATTTCGCATTGCTGTGCAGGGCGTGCGCGAGATATTTGGTGGCA
GCGATGCTGTGAGCCTTCTCGACCTTCCCGGTGTCTACAAATCGAAGGGG
AAAAAGGAAAAAAAAAAAAAGAGGAAAATGGTTGTGCACACTTCGGTGCT
GCTTGTCGGGGCTCGGGGGTTCTTGCAACTGTTGAAATGCTTCTTTTCTT
TCATCTAAGTTCGAGGCTCCTGTTCTGCCGTTGTTCCAATGGTGTCAAAG
CGGCTTTATTAGAGTCTGCTGCGAAAGGCACATGAGCAATGGAGAAACCG
GTTTTTGCCCCAGCTAAGATGACATGGAGTAAATGTGTGTTACACGTGTC
CCCCTTTTGTTGAGAGTCGTACGGTAGAGCTCAGCCTTGGACTTGACTCC
ATTCTTAGCTTTCTTAAATTCCTGCTGTTTGCGTGTCTTCTTCACGCCGC
CTGGGCATCTCTTCGTCTCTGAGTCCCTTCGACTGGGTGCCGATGTCGCT
GTCTCTTGCTGTCCAAACTGTTTGCTACCCTCTGTTAGTGTGTGTCCTTA
AATCACTGCCTCTCGTCTTTGTTGATCCTCCTTCTCTTCCTCGCCCTCAC
TCTTCTCGACAACGACGGATAGCCACCCTCATCCCCCTCCTCCCCTCCTC
TCGATGCCCTTTCCTCTTTCATTTCGCCCACCCTTTCGCTGCTGCGCATT
CGTTCTCCAGGTTCTTGGCAGGGGCCGCATAATCGAGTGCTCGGTTTGCG
GCAACAAGTGGTTCCAGACAGCGGAACGAGCGCTCACCCTCACGGAGAAT
TTTTTGATGAAGGTACTCCTGCAACGGTATAGTCAAACAGGCGACGACAG
AGGGAGGCACGCATGGCGCGGCGTTCGTCATGCTGGAGCACCAGATCTTA
GTAGTAGATGGGGAGGGCAAGGCGGAGGGTAAGGACGAGGGATTGTCAAA
ACAGATCGCAAGCTCACGGGCACACACAGATTTGTCGAAGCTTACGCCCT
CCATGTTGCTTACCACTTTGACCAGACGCTGACAAACGAGGACGCCGCTC
GGGGAAAGCAGGGTGATCCTAACAGCCTACATCAATCCCCAAACTTCCTC
GGCTCCCCCCCCCCTGCCCCTTGGCCCCTCCTGGCTCCAGGGTTGGACCG
AGGAGCGTGCGAAACAGGCAGCGGAAGCAGTGAAAAGATTTGCCGGTTTC
GAGCTCTTCGTGGGGAACATCCCCCTCTCCGTTAGTGAAAAGGTGAGAAA
TAATTTTAGCGCGTGCCGAACCCCAGCTGATGCCGTAGACCGCCACCGCC
CACCCGGTCATGAGAGTCTAGAGGCATATTAGCACACCACGACAGAGCGA
AGCAGGGCATTAGTTGGAAAGACCTTCCTTGCCCGGAGATTTGCCGAAAC
GCCGCACCGCCGTCGTTGCCGCGTTCCAGGGTCACGCCGAGAATTTTCCG
CTGAGTGAGGAGTAAGGGGAGGGGGGGGGGCGGGAAGGTCGTTCATGCAT
ATCTTTTTCTTATCGCAGGTTTCTGGCGAAGATGCTGCAGAACCCTTTGC
ATCATACAGATGCGCCCGTAATCTGTCTAATGAATCGGACATTTTATCCT
TTCCCGGGGTGCGGCAACAGTTTTCGAAACATTTACCTGAAGATCTTGTT
CGAATCCTGGTCCTCCAAAAAACACTATAGTAGGCCTCTTTCTTCTCAAA
CTTAAAAAAGTATCTGCACCCCATCCATTATTTTGCTTGCTTTGAACGTT
TGCACGCACGTAGGACCTAGGGGCGATCTTCGGGAACTTCGGCGAGATCA
TGAGCGCGTCCCTTGTGACAGACGCCCACGGCGACTCGAAGGGGTACGGT
TTCATTAAGGTGCGAATAAGTGCAACGAGGAGGAGGCGACAAGGAACGTC
AGGGGAGCGCGCGGGGGCGGGGACTCGCGCCGGCATGATTACTTTTGTTC
GCCCTCTATGCTACTCGTTTCGCCGTTTTGACCCCGCGTCGCTTTCTTTT
CTCTGCATGCACATTAATCTTCTCTCCTCGGAGAATAACGGCAAGCCGCA
ATTTAGCCGGAGCACATAATGCGTTGACGAGGTCTTGGATTGTGATAATA
TAAGATGACGTACGTTTGCGGAACCGCTTTTGGTGTGAACGCCCTTGCTT
GCCCCGTTTTTTTTGTGATTCATTGTTCTCGAATTCGTCACGCCTCGGCT
TTTGATCCTTCCCCTTCTGATTGTCTCTGCATAAGTCCCCCGCCATTTGA
ATCGACTGGTCTTGCAGCGGACACACGCGGCGTGGACTTCGAAGCCCACC
CATCCCCCATTTCCCCGCCCACCCTTGTCCTCCGCCGGCGACTTCGCTTT
TTTTCTTTGCTCATCTGTGCGCACGGTGGCGGCTTTTCACTCAGATGGGT
TCGGCCGAGGACGGTCTGAAGGCCATCAAGGCGCTCAATGGTATAGAGAT
CCAGGGGTGAGTGAGTTCGTTTTGTATTTTCTGCCTTGGGTGTTAGGAGC
CTCTGATCCGTTCTTCACCTTCCGCCCTGCTGTCTGTTGCGGTTGATTCC
CCTGCCTCCCGTGTATGATGGTGCGGTCAACTCTCGTGGACGTGTACCGC
AGACAGTCAGGCGGGCAAGCAGCCGCCTTGTGGTGAGCGCCAAACCGAAC
AAGAGAGGAGGAGGGACAATCCAGCCGCGGCCAGAGTCTTGGGGCCGACA
TGACACCCCGCTGCCGCAAGCCCCAGTGATTTTCCGTTGAAGGCAGTACC
CGGTGGCACAGACCGCACTTTTTCAGCGTCCAACAACTTATCTTGACACT
CCCTACGCGCCAACCCCGCCCGTCGCTCTGCCCGTATTTCACAACCTTCA
CGATCACGTTGCACTGGTGTGCAACAGGAAGAGCATGCTTGTAAAAGTTG
GCGCCAGCAATTCCGCTGGCGGAGGAGGTCGTGGCGGAAGTTTTCAAGGC
CGGGGGGGAGGAAGCATGGGAGGGAGAGGCAGAGGCGGTGGCGGTGGCGG
CGGCTATCAGGGCGGACGAGGCGGTGGCGGATATTCCGGTGGCGGTAGCT
ACTCACCAGGCTTTTGATTTCTGTTGCAAGGATTGCTATCTGGACAAAAT
TTGGTACGTAAGCGCCGTTTTTCTGTTTTATCCCATTTCCTCCCTGCGTG
GAGACGATGAATGCTGTCTTTGTTTCTTGCGAGAGCGGGGAGCATGGATC
GCGCCGCCAACAAGGCTGCTGGCTCCTCGTGTCCGATACCGATACCGGCC
GGTGCCTAGAGACAAGCGCACATTGTTCTCGGCTTCCTGATTGAAGCGGC
GCCATTGACTTTTTCGTAAATGTTTCCACTTTGATTGGTACCGTTTCGTG
TGTGATGGGAGGGGAGGAGGTATGCCTCACGCGAACAGATGGAATGTTAG
AATGACCAAGCAGCGATCAGGCCGGAGTAAAATAGACGCATCACCATATC
AC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:4642890..4648191-

>mRNA_P-fluviatile_contig1.407.1 ID=mRNA_P-fluviatile_contig1.407.1|Name=mRNA_P-fluviatile_contig1.407.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1398bp|location=Sequence derived from alignment at P-fluviatile_contig1:4642890..4648191- (Porterinema fluviatile SAG_2381)
ATGGTGCCGATGGATTCCGGCTCCGGGGGCGCGTCCGACCCGTTCGAGAG
TGACCCGAGGGAGGTGGATCCGACCCTCCAGGGCAGCGCCGGGGACCACT
ACGTCAAGTGCGGGAAGTGCCAGGCCTGCTACCCCATGCAGCTCGAGATG
GTGCCGATGGATTCCGGCTCCGGGGGCGCGTCCGACCCGTTCGAGAGTGA
CCCGAGGGAGGTGGATCCGACCCTCCAGGGCAGCGCCGGGGACCACTACG
TCAAGTGCGGGAAGTGCCAGGCCTGCTACCCCATGCAGCTCGAGGTTCTT
GGCAGGGGCCGCATAATCGAGTGCTCGGTTTGCGGCAACAAGTGGTTCCA
GACAGCGGAACGAGCGCTCACCCTCACGGAGAATTTTTTGATGAAGGTTC
TTGGCAGGGGCCGCATAATCGAGTGCTCGGTTTGCGGCAACAAGTGGTTC
CAGACAGCGGAACGAGCGCTCACCCTCACGGAGAATTTTTTGATGAAGGG
TTGGACCGAGGAGCGTGCGAAACAGGCAGCGGAAGCAGTGAAAAGATTTG
CCGGTTTCGAGCTCTTCGTGGGGAACATCCCCCTCTCCGTTAGTGAAAAG
GGTTGGACCGAGGAGCGTGCGAAACAGGCAGCGGAAGCAGTGAAAAGATT
TGCCGGTTTCGAGCTCTTCGTGGGGAACATCCCCCTCTCCGTTAGTGAAA
AGGACCTAGGGGCGATCTTCGGGAACTTCGGCGAGATCATGAGCGCGTCC
CTTGTGACAGACGCCCACGGCGACTCGAAGGGGTACGGTTTCATTAAGGA
CCTAGGGGCGATCTTCGGGAACTTCGGCGAGATCATGAGCGCGTCCCTTG
TGACAGACGCCCACGGCGACTCGAAGGGGTACGGTTTCATTAAGATGGGT
TCGGCCGAGGACGGTCTGAAGGCCATCAAGGCGCTCAATGGTATAGAGAT
CCAGGGATGGGTTCGGCCGAGGACGGTCTGAAGGCCATCAAGGCGCTCAA
TGGTATAGAGATCCAGGGGAAGAGCATGCTTGTAAAAGTTGGCGCCAGCA
ATTCCGCTGGCGGAGGAGGTCGTGGCGGAAGTTTTCAAGGCCGGGGGGGA
GGAAGCATGGGAGGGAGAGGCAGAGGCGGTGGCGGTGGCGGCGGCTATCA
GGGCGGACGAGGCGGTGGCGGATATTCCGGTGGCGGTAGCTACTCACCAG
GCTTTTGAGAAGAGCATGCTTGTAAAAGTTGGCGCCAGCAATTCCGCTGG
CGGAGGAGGTCGTGGCGGAAGTTTTCAAGGCCGGGGGGGAGGAAGCATGG
GAGGGAGAGGCAGAGGCGGTGGCGGTGGCGGCGGCTATCAGGGCGGACGA
GGCGGTGGCGGATATTCCGGTGGCGGTAGCTACTCACCAGGCTTTTGA
back to top