mRNA_P-fluviatile_contig21.4592.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4592.1
Unique NamemRNA_P-fluviatile_contig21.4592.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4592.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:1259387..1259934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size548
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4592.1prot_P-fluviatile_contig21.4592.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 1259428..1259745 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815925.6646762-UTR-P-fluviatile_contig21:1259386..12594271622815925.6646762-UTR-P-fluviatile_contig21:1259386..1259427Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1259387..1259427 +
1693563752.560279-UTR-P-fluviatile_contig21:1259386..12594271693563752.560279-UTR-P-fluviatile_contig21:1259386..1259427Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1259387..1259427 +
1622815925.6964395-UTR-P-fluviatile_contig21:1259745..12599341622815925.6964395-UTR-P-fluviatile_contig21:1259745..1259934Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1259746..1259934 +
1693563752.5810452-UTR-P-fluviatile_contig21:1259745..12599341693563752.5810452-UTR-P-fluviatile_contig21:1259745..1259934Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 1259746..1259934 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815925.680694-CDS-P-fluviatile_contig21:1259427..12597451622815925.680694-CDS-P-fluviatile_contig21:1259427..1259745Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1259428..1259745 +
1693563752.571874-CDS-P-fluviatile_contig21:1259427..12597451693563752.571874-CDS-P-fluviatile_contig21:1259427..1259745Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 1259428..1259745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4592.1

>prot_P-fluviatile_contig21.4592.1 ID=prot_P-fluviatile_contig21.4592.1|Name=mRNA_P-fluviatile_contig21.4592.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=106bp
MIMRRSASKGLTATSSMNLLCPPLIRSGGIFYFQFVLKAGFSRPTVTLYT
SHTRVLFPHTTAVKMGRTRRTLFCSNPPASCSTRRASFFAVEQRSGLSGW
PYEFL*
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mRNA from alignment at P-fluviatile_contig21:1259387..1259934+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4592.1 ID=mRNA_P-fluviatile_contig21.4592.1|Name=mRNA_P-fluviatile_contig21.4592.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=548bp|location=Sequence derived from alignment at P-fluviatile_contig21:1259387..1259934+ (Porterinema fluviatile SAG_2381)
GGGGGCGCTCCCACACCTTCCGAAGGTGCCCTGAAGGCGCCATGATTATG
CGGAGGAGCGCATCCAAGGGTCTTACTGCTACGTCTTCAATGAATCTGTT
ATGTCCACCGCTCATCCGAAGTGGAGGGATATTTTACTTCCAGTTCGTTT
TGAAGGCCGGATTTTCAAGGCCAACAGTGACACTTTACACAAGTCACACA
CGAGTTTTGTTTCCGCACACGACTGCTGTTAAAATGGGACGGACACGACG
AACGCTGTTTTGTTCCAACCCCCCAGCAAGTTGCTCGACGCGACGAGCAT
CTTTTTTTGCTGTTGAGCAGCGTTCGGGACTTTCCGGCTGGCCCTACGAG
TTCTTATAGCGAGGTGTGTACAGTGGCTTTGGGGAATTCCACGCCGCCGC
GCACACGGCACTCACGGATCGACCTCAGGTGGCGAAGAAGCCTCCGCTCC
AATATCCGCAAAATGAAAAATGTCCCGACAACGAGCAGCAGGAAGAGGTC
GCACCCTACGCGCGCGTTCCGCTCTCATCTCCCTACTTTTTGGGTCCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:1259387..1259934+

>mRNA_P-fluviatile_contig21.4592.1 ID=mRNA_P-fluviatile_contig21.4592.1|Name=mRNA_P-fluviatile_contig21.4592.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=636bp|location=Sequence derived from alignment at P-fluviatile_contig21:1259387..1259934+ (Porterinema fluviatile SAG_2381)
ATGATTATGCGGAGGAGCGCATCCAAGGGTCTTACTGCTACGTCTTCAAT
GAATCTGTTATGTCCACCGCTCATCCGAAGTGGAGGGATATTTTACTTCC
AGTTCGTTTTGAAGGCCGGATTTTCAAGGCCAACAGTGACACTTTACACA
AGTCACACACGAGTTTTGTTTCCGCACACGACTGCTGTTAAAATGGGACG
GACACGACGAACGCTGTTTTGTTCCAACCCCCCAGCAAGTTGCTCGACGC
GACGAGCATCTTTTTTTGCTGTTGAGCAGCGTTCGGGACTTTCCGGCTGG
CCCTACGAGTTCTTATAGATGATTATGCGGAGGAGCGCATCCAAGGGTCT
TACTGCTACGTCTTCAATGAATCTGTTATGTCCACCGCTCATCCGAAGTG
GAGGGATATTTTACTTCCAGTTCGTTTTGAAGGCCGGATTTTCAAGGCCA
ACAGTGACACTTTACACAAGTCACACACGAGTTTTGTTTCCGCACACGAC
TGCTGTTAAAATGGGACGGACACGACGAACGCTGTTTTGTTCCAACCCCC
CAGCAAGTTGCTCGACGCGACGAGCATCTTTTTTTGCTGTTGAGCAGCGT
TCGGGACTTTCCGGCTGGCCCTACGAGTTCTTATAG
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