mRNA_P-fluviatile_contig21.4526.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig21.4526.1
Unique NamemRNA_P-fluviatile_contig21.4526.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig21.4526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig21contigP-fluviatile_contig21:593039..593730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size692
Cds size501
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig21.4526.1prot_P-fluviatile_contig21.4526.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig21 593147..593647 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815925.372016-UTR-P-fluviatile_contig21:593038..5931461622815925.372016-UTR-P-fluviatile_contig21:593038..593146Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 593039..593146 +
1693563752.3973067-UTR-P-fluviatile_contig21:593038..5931461693563752.3973067-UTR-P-fluviatile_contig21:593038..593146Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 593039..593146 +
1622815925.393705-UTR-P-fluviatile_contig21:593647..5937301622815925.393705-UTR-P-fluviatile_contig21:593647..593730Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 593648..593730 +
1693563752.417836-UTR-P-fluviatile_contig21:593647..5937301693563752.417836-UTR-P-fluviatile_contig21:593647..593730Porterinema fluviatile SAG_2381UTRP-fluviatile_contig21 593648..593730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815925.3823874-CDS-P-fluviatile_contig21:593146..5936471622815925.3823874-CDS-P-fluviatile_contig21:593146..593647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 593147..593647 +
1693563752.4083295-CDS-P-fluviatile_contig21:593146..5936471693563752.4083295-CDS-P-fluviatile_contig21:593146..593647Porterinema fluviatile SAG_2381CDSP-fluviatile_contig21 593147..593647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig21.4526.1

>prot_P-fluviatile_contig21.4526.1 ID=prot_P-fluviatile_contig21.4526.1|Name=mRNA_P-fluviatile_contig21.4526.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=167bp
MVRMYFQWWRGAGHVVVDREQGCLCSCMRSDLARRRAFHWAGLASIAPAA
PTPRGEDWGIVGHKPRVDVCRTFENYLSQRSMRHISTTKKAAVLRSLSFR
GNAQVKSSGSHDVWRNGALQAAEHAGGLKRETKSLLIIIAKSHSKATKTR
QRIAGEQPPPLKRCRG*
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mRNA from alignment at P-fluviatile_contig21:593039..593730+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig21.4526.1 ID=mRNA_P-fluviatile_contig21.4526.1|Name=mRNA_P-fluviatile_contig21.4526.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=692bp|location=Sequence derived from alignment at P-fluviatile_contig21:593039..593730+ (Porterinema fluviatile SAG_2381)
CGTCGTCCGAGTCCGGCTCGAGCATGCCGGACGTGGCCTCCTTCGCGGCC
TCCATAGCCTTCTCGACCGTTTCGAGGGCCGTCTGTATGAAATGAGCGCA
CGATTTGTATGGTACGGATGTATTTCCAGTGGTGGCGCGGGGCGGGTCAT
GTTGTCGTGGATAGAGAGCAAGGGTGCCTGTGTTCGTGCATGCGGTCGGA
TTTGGCAAGGAGAAGGGCTTTTCACTGGGCCGGGCTGGCAAGTATAGCAC
CAGCTGCGCCGACTCCGCGAGGGGAGGATTGGGGCATCGTGGGACACAAG
CCGCGGGTGGACGTCTGTCGTACGTTTGAAAATTACCTGTCACAGAGGAG
CATGAGGCACATTTCTACAACGAAAAAAGCTGCAGTTCTACGGTCCTTGT
CCTTCAGAGGCAACGCCCAAGTTAAGTCATCAGGGAGCCATGATGTTTGG
CGTAACGGCGCACTACAAGCAGCAGAGCACGCTGGGGGGTTAAAGAGAGA
GACGAAGTCATTACTTATCATCATTGCGAAAAGCCACAGCAAGGCGACGA
AGACGCGGCAGCGGATTGCTGGCGAGCAGCCTCCTCCCCTCAAGCGTTGC
CGCGGGTAGAAGCTCGCCACACGTGTGTCGGCACGAACATCGTGAGCACA
CCATGACGCGGGCCCAACCATGCAACGTGAACAAGTCTCGTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig21:593039..593730+

>mRNA_P-fluviatile_contig21.4526.1 ID=mRNA_P-fluviatile_contig21.4526.1|Name=mRNA_P-fluviatile_contig21.4526.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1002bp|location=Sequence derived from alignment at P-fluviatile_contig21:593039..593730+ (Porterinema fluviatile SAG_2381)
ATGGTACGGATGTATTTCCAGTGGTGGCGCGGGGCGGGTCATGTTGTCGT
GGATAGAGAGCAAGGGTGCCTGTGTTCGTGCATGCGGTCGGATTTGGCAA
GGAGAAGGGCTTTTCACTGGGCCGGGCTGGCAAGTATAGCACCAGCTGCG
CCGACTCCGCGAGGGGAGGATTGGGGCATCGTGGGACACAAGCCGCGGGT
GGACGTCTGTCGTACGTTTGAAAATTACCTGTCACAGAGGAGCATGAGGC
ACATTTCTACAACGAAAAAAGCTGCAGTTCTACGGTCCTTGTCCTTCAGA
GGCAACGCCCAAGTTAAGTCATCAGGGAGCCATGATGTTTGGCGTAACGG
CGCACTACAAGCAGCAGAGCACGCTGGGGGGTTAAAGAGAGAGACGAAGT
CATTACTTATCATCATTGCGAAAAGCCACAGCAAGGCGACGAAGACGCGG
CAGCGGATTGCTGGCGAGCAGCCTCCTCCCCTCAAGCGTTGCCGCGGGTA
GATGGTACGGATGTATTTCCAGTGGTGGCGCGGGGCGGGTCATGTTGTCG
TGGATAGAGAGCAAGGGTGCCTGTGTTCGTGCATGCGGTCGGATTTGGCA
AGGAGAAGGGCTTTTCACTGGGCCGGGCTGGCAAGTATAGCACCAGCTGC
GCCGACTCCGCGAGGGGAGGATTGGGGCATCGTGGGACACAAGCCGCGGG
TGGACGTCTGTCGTACGTTTGAAAATTACCTGTCACAGAGGAGCATGAGG
CACATTTCTACAACGAAAAAAGCTGCAGTTCTACGGTCCTTGTCCTTCAG
AGGCAACGCCCAAGTTAAGTCATCAGGGAGCCATGATGTTTGGCGTAACG
GCGCACTACAAGCAGCAGAGCACGCTGGGGGGTTAAAGAGAGAGACGAAG
TCATTACTTATCATCATTGCGAAAAGCCACAGCAAGGCGACGAAGACGCG
GCAGCGGATTGCTGGCGAGCAGCCTCCTCCCCTCAAGCGTTGCCGCGGGT
AG
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