mRNA_P-fluviatile_contig1.400.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.400.1
Unique NamemRNA_P-fluviatile_contig1.400.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.400.1 vs. uniprot
Match: A0A7S0PQ95_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0PQ95_MICPS)

HSP 1 Score: 70.5 bits (171), Expect = 1.450e-12
Identity = 41/76 (53.95%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:    4 GLPRLVRLLRSHEAHVCGGAAGAIQNLSREEKSRSLLLNSSGAVESLADLLV-GRHVESQISAAGALVNIVGPDVQ 228
            G+P LVRLL   +  VCG AAGA QN+SRE  SR+L     GAV +L  LL  GR   +Q  AAGAL+NI+GPD++
Sbjct:  131 GVPHLVRLLSDDDDGVCGSAAGATQNVSRERASRALFRRG-GAVHALTKLLARGRDPATQARAAGALLNILGPDLE 205
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BLAST of mRNA_P-fluviatile_contig1.400.1 vs. uniprot
Match: A0A7S0IGD7_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0IGD7_MICPS)

HSP 1 Score: 65.9 bits (159), Expect = 2.120e-10
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 1 
Query:    4 GLPRLVRLLRSHEAHVCGGAAGAIQNLSREEKSRSLLLNSSGAVESLADLLV-GRHVESQISAAGALVNIVGPDV 225
            G+P LVR L   +  VCG AAGA QN+SRE  SR+L     GAVE+L  LL  G    +Q  AAGAL+NI+GPD+
Sbjct:  275 GIPHLVRALGDVDDGVCGSAAGATQNVSRERASRALFRRG-GAVEALTKLLARGCDPATQARAAGALLNILGPDL 348
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BLAST of mRNA_P-fluviatile_contig1.400.1 vs. uniprot
Match: A0A7S2TW83_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TW83_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 1.850e-9
Identity = 46/106 (43.40%), Postives = 62/106 (58.49%), Query Frame = 1 
Query:    1 GGLPRLVRLLRSHEAHVCGGAAGAIQNLSREEKSRSLLLNSSGAVESLADL-LVGRHVESQISAAGALVNIVGPDV----QGSKRR-LLQSVLTDGIVLGVIESCM 300
            G +  L  LL S  A   G AAG IQNLSR  K+R LLL    AV  L+ L L   H+ +Q++A  AL N++ P +     G KRR LL++VL+D + LG+I S +
Sbjct:  228 GAVESLCSLLCSCHAEETGYAAGVIQNLSRHNKARILLLKGQ-AVSLLSRLALTSTHLPAQVAAVCALCNLLSPGLGTGFSGFKRRRLLKNVLSDALALGIIGSAL 332
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S0PQ95_MICPS1.450e-1253.95Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S0IGD7_MICPS2.120e-1053.33Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A7S2TW83_9EUKA1.850e-943.40Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4601390..4602322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.6
Seed ortholog evalue2.4e-07
Seed eggNOG ortholog296587.XP_002506791.1
EggNOG free text desc.Armadillo/beta-catenin-like repeats
EggNOG OGs2E34T@1,2SA9J@2759,37WJK@33090
COG Functional cat.S
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size306
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.400.1prot_P-fluviatile_contig1.400.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4601390..4602322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815330.7681854-CDS-P-fluviatile_contig1:4601389..46014581622815330.7681854-CDS-P-fluviatile_contig1:4601389..4601458Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4601390..4601458 -
1693561523.4383645-CDS-P-fluviatile_contig1:4601389..46014581693561523.4383645-CDS-P-fluviatile_contig1:4601389..4601458Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4601390..4601458 -
1622815330.7774687-CDS-P-fluviatile_contig1:4601734..46017911622815330.7774687-CDS-P-fluviatile_contig1:4601734..4601791Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4601735..4601791 -
1693561524.0564342-CDS-P-fluviatile_contig1:4601734..46017911693561524.0564342-CDS-P-fluviatile_contig1:4601734..4601791Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4601735..4601791 -
1622815330.7897034-CDS-P-fluviatile_contig1:4602142..46023221622815330.7897034-CDS-P-fluviatile_contig1:4602142..4602322Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4602143..4602322 -
1693561524.0782225-CDS-P-fluviatile_contig1:4602142..46023221693561524.0782225-CDS-P-fluviatile_contig1:4602142..4602322Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4602143..4602322 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.400.1

>prot_P-fluviatile_contig1.400.1 ID=prot_P-fluviatile_contig1.400.1|Name=mRNA_P-fluviatile_contig1.400.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=102bp
GGLPRLVRLLRSHEAHVCGGAAGAIQNLSREEKSRSLLLNSSGAVESLAD
LLVGRHVESQISAAGALVNIVGPDVQGSKRRLLQSVLTDGIVLGVIESCM
A*
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mRNA from alignment at P-fluviatile_contig1:4601390..4602322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.400.1 ID=mRNA_P-fluviatile_contig1.400.1|Name=mRNA_P-fluviatile_contig1.400.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=933bp|location=Sequence derived from alignment at P-fluviatile_contig1:4601390..4602322- (Porterinema fluviatile SAG_2381)
GGTGGCTTACCGCGACTGGTCCGACTCCTGCGATCTCACGAGGCCCACGT
GTGCGGCGGGGCGGCTGGGGCGATCCAGAACCTCTCCAGGGAGGAAAAGA
GCCGTTCTCTCCTGCTAAATAGCTCTGGAGCGGTCGAATCGCTGGCAGAC
TTACTGGTTGGGAGGCATGTCGAGAGCCAGGTGTGTTGAAATCAATTGGT
GACGAGGGACGATGAAATGCCCGGGTGTAGGAGTCGGCGGGTGTTATGAA
GATCAAATCGTAACGACGCGATGACTCGAATGATTCCCTTTGCGTGCGTT
CTTTGTTGGCGTATTTCTTGGTCCAATCACAGCGTCGATGAACGGTTGGG
TTGTTGTTGGAGGGAACATGTCCGAGGACAAGTTCAATCATTGTTATTGA
CCTATCACGACTCAGCAGCGCCACAATGGCTTAGGGCGGAAAATTGTTTC
CACTGAATCGATTTGTCGGGCTTTGTGCTTTCCCCTCTGGATTCTCTCTG
TTTCAACGTCGGCGGCGGCGGAGAAACGCAGATTTCTGCGGCGGGTGCCT
TGGTAAATATTGTTGGTCCGGATGTGCAAGGAAGCAAGGTGAGACGCCTG
CAATGCAAACAAACGCAAAACACGGTGTGTGCACTTTGCACCGTTCAACG
TTCAAACAAAGGGACGCAAAAGCAAGTAAGGCATCGAGAAAGGCGCTAGA
CATCTCGGCCCTTGTGTCAGCCTCGGCGTCGACGACGCTCACACCCGATA
GAGCCTTGATAATGGAAAGGCGGCGGTGTATCTCTTCACATCACCAGGCG
ACATCCATACCTTTGACGCCCTGCTGCCTGTCCCTATCTGAATTGATCAT
CACCAAAAACGCAGCGGCGATTATTGCAAAGCGTGCTGACGGACGGAATC
GTCCTCGGGGTGATCGAAAGCTGCATGGCTTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4601390..4602322-

>mRNA_P-fluviatile_contig1.400.1 ID=mRNA_P-fluviatile_contig1.400.1|Name=mRNA_P-fluviatile_contig1.400.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=612bp|location=Sequence derived from alignment at P-fluviatile_contig1:4601390..4602322- (Porterinema fluviatile SAG_2381)
GGTGGCTTACCGCGACTGGTCCGACTCCTGCGATCTCACGAGGCCCACGT
GTGCGGCGGGGCGGCTGGGGCGATCCAGAACCTCTCCAGGGAGGAAAAGA
GCCGTTCTCTCCTGCTAAATAGCTCTGGAGCGGTCGAATCGCTGGCAGAC
TTACTGGTTGGGAGGCATGTCGAGAGCCAGGGTGGCTTACCGCGACTGGT
CCGACTCCTGCGATCTCACGAGGCCCACGTGTGCGGCGGGGCGGCTGGGG
CGATCCAGAACCTCTCCAGGGAGGAAAAGAGCCGTTCTCTCCTGCTAAAT
AGCTCTGGAGCGGTCGAATCGCTGGCAGACTTACTGGTTGGGAGGCATGT
CGAGAGCCAGATTTCTGCGGCGGGTGCCTTGGTAAATATTGTTGGTCCGG
ATGTGCAAGGAAGCAAGATTTCTGCGGCGGGTGCCTTGGTAAATATTGTT
GGTCCGGATGTGCAAGGAAGCAAGCGGCGATTATTGCAAAGCGTGCTGAC
GGACGGAATCGTCCTCGGGGTGATCGAAAGCTGCATGGCTTAGCGGCGAT
TATTGCAAAGCGTGCTGACGGACGGAATCGTCCTCGGGGTGATCGAAAGC
TGCATGGCTTAG
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