mRNA_P-fluviatile_contig1.356.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.356.1
Unique NamemRNA_P-fluviatile_contig1.356.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.356.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:4229521..4230853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size701
Cds size693
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.356.1prot_P-fluviatile_contig1.356.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 4229527..4230853 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.6768486-UTR-P-fluviatile_contig1:4229520..42295261622815266.6768486-UTR-P-fluviatile_contig1:4229520..4229526Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4229521..4229526 +
1693561305.2645063-UTR-P-fluviatile_contig1:4229520..42295261693561305.2645063-UTR-P-fluviatile_contig1:4229520..4229526Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 4229521..4229526 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815266.689813-CDS-P-fluviatile_contig1:4229526..42296651622815266.689813-CDS-P-fluviatile_contig1:4229526..4229665Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4229527..4229665 +
1693561305.5178654-CDS-P-fluviatile_contig1:4229526..42296651693561305.5178654-CDS-P-fluviatile_contig1:4229526..4229665Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4229527..4229665 +
1622815266.702972-CDS-P-fluviatile_contig1:4230299..42308531622815266.702972-CDS-P-fluviatile_contig1:4230299..4230853Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4230300..4230853 +
1693561306.0877244-CDS-P-fluviatile_contig1:4230299..42308531693561306.0877244-CDS-P-fluviatile_contig1:4230299..4230853Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 4230300..4230853 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.356.1

>prot_P-fluviatile_contig1.356.1 ID=prot_P-fluviatile_contig1.356.1|Name=mRNA_P-fluviatile_contig1.356.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=231bp
MTGTAAGTAVGGCTAPVVPLALGSTTPPRAEFHHRPFAAAVPAVSTASSA
APASCPTPGPPSASPSSPHPTPALPPPSLPPDTPVAITTGSSAESQPRTI
PQGSQEPLPPPTAPPPGADTSPGPSDPAPTNPASPLAAASPIPPAPATAA
TASAAAVQAGSGALGAEEAAAAPSPVPAPPPASDTSYAAAAAAAAAAHHN
NGLLSSPVPIGTQVAGCSWLQQLPLAAAAAA
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mRNA from alignment at P-fluviatile_contig1:4229521..4230853+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.356.1 ID=mRNA_P-fluviatile_contig1.356.1|Name=mRNA_P-fluviatile_contig1.356.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1333bp|location=Sequence derived from alignment at P-fluviatile_contig1:4229521..4230853+ (Porterinema fluviatile SAG_2381)
CAGGGGATGACGGGGACGGCGGCGGGAACGGCAGTGGGGGGGTGCACAGC
GCCGGTCGTTCCCTTGGCGCTCGGCTCCACTACTCCGCCTCGGGCTGAAT
TTCATCATCGTCCGTTTGCTGCTGCTGTACCTGCCGTGTCGACAGGTGCG
ACGAAGGAAGCAAATGTTCTTAGAGTTTCGCCCACTGTCTTCATCGAGAC
AAAGCGAGTGAGAGAGAGCGAGAGAGTTACCTGCTTCGTTATCGGCGGCG
TTTTTCCCGTCTGATTTTTCAATCAGATGCACGTTGAATTCCGTGTGGTA
CAAACGCCAGCCCGATAGGAGGGAGACGCGTAGTCACGATGTAGATTCGA
GATCCCAAGGCTTTCCCGGCCCTGGGGAAGTTTACGCGCATTTTCCTATC
TTGCCCACCAACCCCTTTGCTCACGCAGATTTTGAGAGGGTTATTCACCA
TTCACTTGTTATTGGACGACTTGCTTGTCCAATCCATGCAAACCGTGGCA
GATTGCAGGCCATGTTTTCCTTTTCATACAACCGTTATCACCCGCGCGTA
TCCCTTGGCTTCCGCGAGACTCTATAATGTATAAATCCGTGACTCGCTAA
ATTGTTCGACGAGCGACCGAGAACGCATTGCGTGACCTCGTAGACTTAAA
CCTTTCTTCCTTCTTTTCTTCTCCTTCTGGTCTTCTCCTTCTTCTGCTTC
TGCTTCTTGTTCTTCTCCTCCTTCTGCGTCTGTCCCTTTTCCTTTGTCTC
GTTTTCCCGCTACCTTGTCCGTCAACCAGCCTCTTCCGCCGCTCCGGCTA
GTTGTCCAACCCCAGGTCCACCGTCGGCGTCTCCCTCTTCACCACATCCG
ACGCCAGCTCTTCCACCGCCGTCACTACCCCCCGACACGCCAGTCGCCAT
CACCACCGGGAGCTCGGCAGAATCACAGCCACGGACTATTCCCCAAGGGT
CGCAAGAGCCGCTGCCACCTCCGACGGCACCACCGCCAGGAGCAGACACT
TCCCCGGGTCCCTCCGACCCTGCTCCTACAAACCCAGCGTCTCCTCTTGC
TGCTGCGAGTCCCATACCGCCCGCCCCCGCCACCGCCGCCACTGCTTCCG
CTGCTGCCGTTCAAGCGGGCAGTGGAGCGTTGGGGGCGGAGGAAGCGGCA
GCAGCGCCGTCTCCGGTTCCTGCCCCGCCACCCGCCAGCGATACTTCCTA
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCATCACAACAACGGTTTGC
TTTCATCACCGGTTCCGATCGGCACGCAAGTCGCGGGGTGTTCTTGGCTT
CAACAGCTACCCTTGGCGGCGGCCGCTGCGGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:4229521..4230853+

>mRNA_P-fluviatile_contig1.356.1 ID=mRNA_P-fluviatile_contig1.356.1|Name=mRNA_P-fluviatile_contig1.356.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1386bp|location=Sequence derived from alignment at P-fluviatile_contig1:4229521..4230853+ (Porterinema fluviatile SAG_2381)
ATGACGGGGACGGCGGCGGGAACGGCAGTGGGGGGGTGCACAGCGCCGGT
CGTTCCCTTGGCGCTCGGCTCCACTACTCCGCCTCGGGCTGAATTTCATC
ATCGTCCGTTTGCTGCTGCTGTACCTGCCGTGTCGACAGATGACGGGGAC
GGCGGCGGGAACGGCAGTGGGGGGGTGCACAGCGCCGGTCGTTCCCTTGG
CGCTCGGCTCCACTACTCCGCCTCGGGCTGAATTTCATCATCGTCCGTTT
GCTGCTGCTGTACCTGCCGTGTCGACAGCCTCTTCCGCCGCTCCGGCTAG
TTGTCCAACCCCAGGTCCACCGTCGGCGTCTCCCTCTTCACCACATCCGA
CGCCAGCTCTTCCACCGCCGTCACTACCCCCCGACACGCCAGTCGCCATC
ACCACCGGGAGCTCGGCAGAATCACAGCCACGGACTATTCCCCAAGGGTC
GCAAGAGCCGCTGCCACCTCCGACGGCACCACCGCCAGGAGCAGACACTT
CCCCGGGTCCCTCCGACCCTGCTCCTACAAACCCAGCGTCTCCTCTTGCT
GCTGCGAGTCCCATACCGCCCGCCCCCGCCACCGCCGCCACTGCTTCCGC
TGCTGCCGTTCAAGCGGGCAGTGGAGCGTTGGGGGCGGAGGAAGCGGCAG
CAGCGCCGTCTCCGGTTCCTGCCCCGCCACCCGCCAGCGATACTTCCTAT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCATCACAACAACGGTTTGCT
TTCATCACCGGTTCCGATCGGCACGCAAGTCGCGGGGTGTTCTTGGCTTC
AACAGCTACCCTTGGCGGCGGCCGCTGCGGCGCCTCTTCCGCCGCTCCGG
CTAGTTGTCCAACCCCAGGTCCACCGTCGGCGTCTCCCTCTTCACCACAT
CCGACGCCAGCTCTTCCACCGCCGTCACTACCCCCCGACACGCCAGTCGC
CATCACCACCGGGAGCTCGGCAGAATCACAGCCACGGACTATTCCCCAAG
GGTCGCAAGAGCCGCTGCCACCTCCGACGGCACCACCGCCAGGAGCAGAC
ACTTCCCCGGGTCCCTCCGACCCTGCTCCTACAAACCCAGCGTCTCCTCT
TGCTGCTGCGAGTCCCATACCGCCCGCCCCCGCCACCGCCGCCACTGCTT
CCGCTGCTGCCGTTCAAGCGGGCAGTGGAGCGTTGGGGGCGGAGGAAGCG
GCAGCAGCGCCGTCTCCGGTTCCTGCCCCGCCACCCGCCAGCGATACTTC
CTATGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTCATCACAACAACGGTT
TGCTTTCATCACCGGTTCCGATCGGCACGCAAGTCGCGGGGTGTTCTTGG
CTTCAACAGCTACCCTTGGCGGCGGCCGCTGCGGCG
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