mRNA_P-fluviatile_contig1.325.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.325.1
Unique NamemRNA_P-fluviatile_contig1.325.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.325.1 vs. uniprot
Match: D8LLP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLP8_ECTSI)

HSP 1 Score: 334 bits (857), Expect = 8.530e-106
Identity = 176/220 (80.00%), Postives = 191/220 (86.82%), Query Frame = 2 
Query:  344 GMGDMDPVKLGLFAVAGLGVAAAGFSTAVYWRMQYVVAALLTNRVPVVQGGAEVLELSARDTKTLYYLPTGGVRRVTLSTVKDLENEIVNGAAIQAKIPTALVRKQERGKVSCATGTMDCVVSVYGFSSGVAAESGEG------GATTLRELVSEAARVLKPGGTLLFVERGESQELVDEVRDVLGAVDVNMVTNLVDPYCVAMGTKTKVTEEAVGTALG 985
            G+ DMDP KLGLFA+ GLGVAAAGFSTAVYWRMQYVVAALLTNRVP +QGGAEVLELSA+DTKTLYY+PTGGVRR+TLSTVKDLENEIVNGAAIQAKIPTALVRKQE  K+SC +GTMDCVVSVYGFS GVAA +          A TL+ LVSE ARVLKPGGT+LFVE+GESQELVD +R+ LG V+VNMVTNLVDPYCVAM TKTKVTEE VGT  G
Sbjct:  102 GLLDMDPAKLGLFALGGLGVAAAGFSTAVYWRMQYVVAALLTNRVPAIQGGAEVLELSAKDTKTLYYMPTGGVRRLTLSTVKDLENEIVNGAAIQAKIPTALVRKQEGTKISCTSGTMDCVVSVYGFSGGVAAAAASNKGANAAAAGTLKGLVSEVARVLKPGGTVLFVEKGESQELVDALREALGTVEVNMVTNLVDPYCVAMATKTKVTEEEVGTVSG 321
[Close]
BLAST of mRNA_P-fluviatile_contig1.325.1 vs. uniprot
Match: A0A836CAE9_9STRA (Methyltransf_11 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAE9_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.000e-49
Identity = 98/207 (47.34%), Postives = 139/207 (67.15%), Query Frame = 2 
Query:  332 LSEAGMGDMDPVKLGLFAVAGLGVAAAGFSTAVYWRMQYVVAALLTNRVPVVQGGAEVLELSARDTKTLYYLPTGGVRRVTLSTVKDLENEIVNGAAIQAKIPTALVRKQERGKVSCATGTMDCVVSVYGFSSGVAAESGEGGATTLRELVSEAARVLKPGGTLLFVERGESQEL-VDEVRDVLGAVDVNMVTNLVDPYCVAMGTKT 949
            ++++G+   D   + + A+ G  V  A F+  VYWRMQY+ AALLT RVP V GGA+VL+LSA+D+K LYYLP+GG RRV LST+ DL+ ++ + AA+QA++P   VRKQ    + C TG MD V+S+ GF+          G+T  + L+ E  RVLKPGG L+FVE+G S +L + E++  +G  +VN+V+NL  PY VA+ TKT
Sbjct:   71 IAQSGVNFADGNTVTVAALLGTAVGLAAFNAIVYWRMQYITAALLTRRVPRVAGGADVLQLSAKDSKALYYLPSGGARRVILSTITDLKQDLADAAAVQARVPVVSVRKQLDDTLDCPTGIMDAVISLGGFN----------GSTNTKRLIKEVTRVLKPGGQLIFVEQGGSNDLLIQELQKSVGETEVNIVSNLFRPYTVAVSTKT 267
[Close]
BLAST of mRNA_P-fluviatile_contig1.325.1 vs. uniprot
Match: A0A388LJ85_CHABU (Methyltransf_11 domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388LJ85_CHABU)

HSP 1 Score: 82.0 bits (201), Expect = 7.550e-13
Identity = 59/201 (29.35%), Postives = 94/201 (46.77%), Query Frame = 2 
Query:  428 VYWRMQYVVAALLTNRVPVVQGGAEVLELSARDTKTLYYLPTGGVRRVTLSTVKDLENEIVNGAAIQAKIPTALVRKQERGKVSCATGTMDCVVSVYGFSSGVAAESGEGGATTLRELVSEAARVLKPGGTLLFVERGES--------------------------QELVDEVRDV--LGAVDVNMVTNLVDPYCVAMGTK 946
            VY+RMQYV AA+L   VP  +GGA VL+L+    K LYYLP   V+ + ++       ++++  A+QA +P         G +   + ++D VVS+Y   S             ++ ++ EA RVLKPG  ++FVE   +                          +  + E++ V  LG V+ +MV    DP+ V +G K
Sbjct:  186 VYFRMQYVTAAMLARHVP--RGGARVLDLNVAGGKNLYYLPKDVVQVIAVNP--KASRQLLDNQAVQAGVPIVFEDMTASGALDLPSNSVDAVVSIYALCS----------TPDVQNILKEAVRVLKPGKPIIFVENVAASGGIVLAAQRALEAAHNLTGWGVHTVRNTLQEIKTVEELGTVESDMVAEFQDPHVVGIGIK 372
[Close]
BLAST of mRNA_P-fluviatile_contig1.325.1 vs. uniprot
Match: A0A1Y1HWE2_KLENI (Methyltransf_11 domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWE2_KLENI)

HSP 1 Score: 70.9 bits (172), Expect = 6.020e-10
Identity = 61/166 (36.75%), Postives = 89/166 (53.61%), Query Frame = 2 
Query:  347 MGDMDPVKL-GLFAVAGLGVAAAGFSTAVYWRMQYVVAALLTNRVPVVQGGAEVLELSARDT--KTLYYLPTGGVRRVTLSTVKDLENEIVNGAAIQAKIPTALVRKQERGKVSCATGTMDCVVSVYGFSSGVAAESGEGGATTLRELVSEAARVLKPGGTLLFVE 835
            +G + P  L G  ++AG GV  A    AVY+RMQY+ AA++   VP  +GGA +++LS +D   + L+YLP   V+ VT+    D +   +    I+A +P   VR     +++    ++D VV VYG S      +    A  LRE    AARVLKPG   +FVE
Sbjct:    5 VGGVSPAALAGALSIAGFGVLRA----AVYFRMQYITAAMVARHVP--RGGARLVDLSPKDAAGRNLFYLPKDAVQ-VTVFDGAD-KGAYLQELGIRAGVPVD-VRPVPAARMNLPPASVDAVVCVYGLS------TTRDAAAVLRE----AARVLKPGKPFIFVE 151
[Close]
BLAST of mRNA_P-fluviatile_contig1.325.1 vs. uniprot
Match: A0A2P6VIW4_9CHLO (Phosphatidylethanolamine N-methyltransferase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VIW4_9CHLO)

HSP 1 Score: 68.9 bits (167), Expect = 6.280e-9
Identity = 71/215 (33.02%), Postives = 103/215 (47.91%), Query Frame = 2 
Query:  263 LSSAALHATGTVGVDGVAAGSVLLSEAGMGDMDPVKLGLFAVAGLGVAAAGFSTAVYWRMQYVVAALLTNRVPVVQGGAEVLELSARDTKTLYYLPTGGVRRVTLSTVKDLENEIVNGAAIQAKIPTALVRKQERGKVSCATGTM-DCVVSVYGFSSGVAAESGEGGATTLRELVSEAARVLKPGGTLLFVERGESQELVDEVRDVLGAVDVNMV 904
            L  AA+ A     VD +A G   L+   +    P      A+AGL     G     Y +++YV AA+L   V    GGA VL+L    T+ LYY P G V+ VT+    DL+  +   A +QAK+P   V++  +  ++   G+  D VV +     G   + GE       +L ++  RVLKPGGTL++V+R     L   V    GAVD  +V
Sbjct:   47 LPPAAVLADAAAAVDALAGGPGELASWVL----PAAGAFIALAGL----VGLRIGTYSQVEYVTAAMLARHVK--PGGARVLQLGGT-TRDLYYYPAGTVQ-VTVGGA-DLKTGLWEQAGMQAKVPVQAVQEDVQRVLAAQAGSSADSVVLL-----GTMGQLGEP-----EQLAAQVYRVLKPGGTLVYVQRVRGGPLQPLVGGTDGAVDAALV 238
[Close]
BLAST of mRNA_P-fluviatile_contig1.325.1 vs. uniprot
Match: A0A6V1P0T4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P0T4_HETAK)

HSP 1 Score: 66.6 bits (161), Expect = 2.370e-8
Identity = 77/235 (32.77%), Postives = 109/235 (46.38%), Query Frame = 2 
Query:  383 AVAGLGVAA-AGFSTAVYWRMQYVVAALLTNRVPVVQG-GAEVLELSARDTKTLYYLPTGGVRRVTLSTVKDLENE-IVNGAAIQAKIPTALVRKQERGKVSCATGTMDCVVSVYGFSSGVAAESGEGGATTLRELVSEAARVLKPGGTLLFVER-GESQELVDEVRDVLGAVDVNMVTNLVD----PYCVAMGTKTKV------TEEAVGTALGENGKTREGR-NRRERRLMKK 1042
            A+ GLGV   AG S   YW +QY+ A++L+N +   +G    VLEL A+D K++YY   G V ++TL    D  N  I   +  Q  I +  ++   +          D VV V G      AE G  GA    E ++ AA VLKP GT +F+E+ GE+     EV  + GA +        D    P  + +GT T V         A   A  ++  T EG  NR++RR   K
Sbjct:   60 AIVGLGVVGLAGASALNYWNVQYITASMLSNSI---RGQNLAVLELGAKDCKSMYYFGEGCVSQLTLQGNPDKINPGIAKSSGQQLGINSVAIKASAKDLPPI----YDFVVCVNGL-----AELGMSGA----EAINLAASVLKPEGTFVFIEQLGEA-----EVDAMAGAAEAGGRYQSFDFDAVPGPLGLGTPTVVGRAQTLVSSAKAAATQQSAATEEGALNRKQRRKQNK 273
[Close]
BLAST of mRNA_P-fluviatile_contig1.325.1 vs. uniprot
Match: A0A7S0SBL0_9CHLO (Hypothetical protein n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SBL0_9CHLO)

HSP 1 Score: 65.9 bits (159), Expect = 1.120e-7
Identity = 65/209 (31.10%), Postives = 92/209 (44.02%), Query Frame = 2 
Query:  248 EPLQQLSSAALHATGTV-GVDGVAAG----------SVLLSEAGMGDMDPVKLG--LFAVAGLGVAAAGFSTAVYWRMQYVVAALLTNRVPVVQGGAEVLELSARDTKTLYYLPTGGVRRVTLSTVKDLENEIVNGAAIQAKIPTALVRKQERGKVSCATGTMDCVVSVYGFSSGVAAESGEGGATTLRELVSEAARVLKPGGTLLFVE 835
            E +   SS+ALH +  V G  GV  G          +VL     +GD+    LG  L  + G  +A     T VYWR+QY+ AA++   VP   G A VLE      + LYY P G    + +    D + +++   +I A +P     +          GT+D VV+      G    S +  A     +V EA R LKPG  L+FVE
Sbjct:  129 ESILASSSSALHLSRFVEGAAGVVTGPASEHAELGRAVLFQLGDIGDVTGGWLGPLLSVLGGFAIA----KTVVYWRVQYITAAMIAKHVP--PGAARVLEFGVGQGRNLYYYPKG--TGMVVGVDPDAKEDLLIQVSIAAGVPLVSKAQSLEAPTGQGDGTLDAVVTT-----GALRRSNDPEA-----IVREAGRCLKPGAPLVFVE 319
[Close]
BLAST of mRNA_P-fluviatile_contig1.325.1 vs. uniprot
Match: A0A7S4GHM6_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GHM6_9EUGL)

HSP 1 Score: 60.1 bits (144), Expect = 1.240e-6
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 2 
Query:  401 VAAAGFSTAVYWRMQYVVAALLTNRVPVVQG-GAEVLELSARDTKTLYYLPTG--GVRRVTLSTVKDLENEIVNGAAIQAKIPTALVRKQERGKVSCATGTMDCVVSVYGFSSGVAAESGEGGATTLRELVSEAARVLKPGGTLLFVERGES 847
            +A   + T VY+++QY+ AAL+ N VP  +G  A  LEL     + LYY P    GV  V   +  +L  +         ++  +     +      AT ++DCVVS+   + G +A+           +++E ARVL+PGG L+FVE G+S
Sbjct:    1 LAVVAYRTVVYFQLQYITAALIGNHVP--RGVNATCLELGIGGGRNLYYYPNDIKGVIGVDSKSNPELLQKTAEKCFQSVQLIESPTAAADTWGKKVATASVDCVVSIQ--TDGASAK-----------VLAEVARVLRPGGKLIFVEPGDS 137
[Close]
BLAST of mRNA_P-fluviatile_contig1.325.1 vs. uniprot
Match: A0A7S3UC57_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UC57_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 2.540e-5
Identity = 61/220 (27.73%), Postives = 93/220 (42.27%), Query Frame = 2 
Query:  362 PVKLGLFAVAGLGVAAAGFSTAVYWRMQYVVAALLTNRVPVVQGGAEVLELSARDTKTLYYLPTGGVRRVTLSTVKDLENEIVNGAAIQAKIPTALVRKQERGKVSCATGTMDCVVSVYGFSSGVAAESGEGGATTLRELVSEAARVLKPGGTLLFVER--GESQELVDEVRDVLG----AVDVNMVTNLVDPYCVAMGTKTKVTEEAVGTALGENGKTR 1003
            P+     AV  +G+ A   S  VY+R+QY+ AA++ N VP   G   V EL     K LYY P G V  +        +  ++   A+ A +P  ++      +      ++D VVS              G A  +R  V E+ R+LKPG  L+FVE   G + E    VR+  G     +D     +   P+ + +  K     E +GT +    K R
Sbjct:  135 PMLAAAIAVPVVGLLALRIS--VYFRLQYITAAMIGNNVPT--GETRVAELGIGTGKNLYYYPEGTV--LVYGVDMTAKKGLLEKTAVAAGVPVEVINAGP-AETGLPNASVDAVVSTGAL----------GIADDVRGCVKESLRILKPGRPLIFVESMTGAASEAPQVVRNEGGFKAVQIDEEWERSPWAPHAIGVAIK-----EDIGTEVASAEKER 332
[Close]
BLAST of mRNA_P-fluviatile_contig1.325.1 vs. uniprot
Match: A0A2P6U3L6_CHLSO (Methyltransferase type 11 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U3L6_CHLSO)

HSP 1 Score: 55.1 bits (131), Expect = 7.630e-5
Identity = 44/147 (29.93%), Postives = 72/147 (48.98%), Query Frame = 2 
Query:  482 VVQGGAEVLELSARDTKTLYYLPTGGVRRVTLSTVKDLENEIVNGAAIQAKIPTALVRKQERGKVSCATG-TMDCVVSVYGFSSGVAAESGEGGATTLRELVSEAARVLKPGGTLLFVERGESQELVDEVRDVLGAVDVNMVTNLVD 919
            V QGGA VL+L    T+ ++Y P   ++ VT+    D+   +   A +QAK+P   V+ + +  +S   G T D +V +                  +++L+S+  RVLKPG TL+FV+R     L   +    GAVD  ++  + D
Sbjct:    6 VKQGGARVLQLGG-STRDIFYYPADTIQ-VTVGG-PDVSPGLWEQAGMQAKVPVQAVKAEPQKVLSSQAGSTADSIVLLNQLQEWA----------DMQQLLSQVYRVLKPGATLVFVQRLRGGPLQPLLGGSAGAVDPTLIDQIQD 139
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.325.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LLP8_ECTSI8.530e-10680.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAE9_9STRA1.000e-4947.34Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A388LJ85_CHABU7.550e-1329.35Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A1Y1HWE2_KLENI6.020e-1036.75Methyltransf_11 domain-containing protein n=1 Tax=... [more]
A0A2P6VIW4_9CHLO6.280e-933.02Phosphatidylethanolamine N-methyltransferase n=1 T... [more]
A0A6V1P0T4_HETAK2.370e-832.77Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0SBL0_9CHLO1.120e-731.10Hypothetical protein n=1 Tax=Mantoniella antarctic... [more]
A0A7S4GHM6_9EUGL1.240e-631.58Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S3UC57_9CHLO2.540e-527.73Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A2P6U3L6_CHLSO7.630e-529.93Methyltransferase type 11 n=1 Tax=Chlorella soroki... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3928328..3933272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score336.7
Seed ortholog evalue1.3e-89
Seed eggNOG ortholog2880.D8LLP8
EggNOG OGs2E068@1,2S7MS@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-04_004940.1
Exons5
Model size2047
Cds size1026
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.411917-UTR-P-fluviatile_contig1:3928327..39283671622815321.411917-UTR-P-fluviatile_contig1:3928327..3928367Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3928328..3928367 +
1693561493.4304426-UTR-P-fluviatile_contig1:3928327..39283671693561493.4304426-UTR-P-fluviatile_contig1:3928327..3928367Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3928328..3928367 +
1622815321.4705992-UTR-P-fluviatile_contig1:3932291..39332721622815321.4705992-UTR-P-fluviatile_contig1:3932291..3933272Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3932292..3933272 +
1693561493.488406-UTR-P-fluviatile_contig1:3932291..39332721693561493.488406-UTR-P-fluviatile_contig1:3932291..3933272Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3932292..3933272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815321.4222636-CDS-P-fluviatile_contig1:3928367..39287781622815321.4222636-CDS-P-fluviatile_contig1:3928367..3928778Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3928368..3928778 +
1693561493.4402313-CDS-P-fluviatile_contig1:3928367..39287781693561493.4402313-CDS-P-fluviatile_contig1:3928367..3928778Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3928368..3928778 +
1622815321.4314566-CDS-P-fluviatile_contig1:3930166..39303161622815321.4314566-CDS-P-fluviatile_contig1:3930166..3930316Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3930167..3930316 +
1693561493.4490845-CDS-P-fluviatile_contig1:3930166..39303161693561493.4490845-CDS-P-fluviatile_contig1:3930166..3930316Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3930167..3930316 +
1622815321.4403877-CDS-P-fluviatile_contig1:3930604..39308591622815321.4403877-CDS-P-fluviatile_contig1:3930604..3930859Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3930605..3930859 +
1693561493.45866-CDS-P-fluviatile_contig1:3930604..39308591693561493.45866-CDS-P-fluviatile_contig1:3930604..3930859Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3930605..3930859 +
1622815321.4497573-CDS-P-fluviatile_contig1:3931302..39314011622815321.4497573-CDS-P-fluviatile_contig1:3931302..3931401Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3931303..3931401 +
1693561493.4691103-CDS-P-fluviatile_contig1:3931302..39314011693561493.4691103-CDS-P-fluviatile_contig1:3931302..3931401Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3931303..3931401 +
1622815321.4613235-CDS-P-fluviatile_contig1:3932180..39322911622815321.4613235-CDS-P-fluviatile_contig1:3932180..3932291Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3932181..3932291 +
1693561493.4784405-CDS-P-fluviatile_contig1:3932180..39322911693561493.4784405-CDS-P-fluviatile_contig1:3932180..3932291Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3932181..3932291 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.325.1prot_P-fluviatile_contig1.325.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3928368..3932291 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.325.1

>prot_P-fluviatile_contig1.325.1 ID=prot_P-fluviatile_contig1.325.1|Name=mRNA_P-fluviatile_contig1.325.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=342bp
MAIFKTRKTSVRAILLLSLARLVTPVGGFVSPPRLKLNTVSSGLPRYSSS
SSSSRWRLIPTAMLPAGEAEPLQQLSSAALHATGTVGVDGVAAGSVLLSE
AGMGDMDPVKLGLFAVAGLGVAAAGFSTAVYWRMQYVVAALLTNRVPVVQ
GGAEVLELSARDTKTLYYLPTGGVRRVTLSTVKDLENEIVNGAAIQAKIP
TALVRKQERGKVSCATGTMDCVVSVYGFSSGVAAESGEGGATTLRELVSE
AARVLKPGGTLLFVERGESQELVDEVRDVLGAVDVNMVTNLVDPYCVAMG
TKTKVTEEAVGTALGENGKTREGRNRRERRLMKKASTPGKD*
back to top

mRNA from alignment at P-fluviatile_contig1:3928328..3933272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.325.1 ID=mRNA_P-fluviatile_contig1.325.1|Name=mRNA_P-fluviatile_contig1.325.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4945bp|location=Sequence derived from alignment at P-fluviatile_contig1:3928328..3933272+ (Porterinema fluviatile SAG_2381)
CAACTGTTAATGCTGGGTGTTCTCGCGGCATCCCACAGACATGGCGATCT
TCAAGACTAGGAAAACTAGCGTTCGTGCGATCCTGCTGCTGAGTTTGGCG
AGATTGGTCACGCCGGTCGGCGGATTTGTCTCACCTCCACGACTAAAGTT
GAACACCGTATCATCAGGTCTCCCACGCTACAGCAGCAGCAGCAGTAGCA
GCAGATGGCGACTGATCCCGACAGCCATGCTCCCGGCAGGAGAAGCAGAG
CCGCTGCAGCAGTTATCATCGGCGGCTTTGCATGCTACTGGGACTGTGGG
TGTTGATGGGGTGGCAGCAGGAAGCGTGTTGCTGTCGGAGGCCGGGATGG
GCGACATGGATCCGGTCAAGCTCGGCCTGTTCGCTGTTGCGGGGCTTGGT
GTTGCCGCCGCTGGGTTCTCGACCGCCGTGTACTGGCGCATGCAGTACGT
GGTGAGTGTAGCAAAGCCCATGTGTCACGGGGCGGGGGTACCTGATGTGC
ACGCAACTTCCTCCCAGTCCACTTCGCCCTTTGGCGGTCATGAAACCCGC
TTCGGGTGTTTCATATTCAAATTATAAGAGTCTACTTCGATATCTTCCCT
TTTTTGTATTTCAAGGCACACCCGAACAACTGCGTAAGGTACGCCGTCTC
ACAAGGTGGGTCGCAAGGCGGCGATCCACTATATGATTGTTCGTGAGGCT
ATTCGCGGGACGGTTGCATTTTGGCTGAAGGCGATCTTGCTTTCACACCC
TCGACACGACCACGCTCGGAGTTGTTGGCGGGGTGCACAAATTGGAGTCG
CTGGCATCAGCCGTGAAGTCCCCCGTCATTGGTCAAATCGGGGCACGAAG
AACTGAACAGCAGTAACGTCCCGCGTTGCGATCATGATGCGCGTGTAATC
ATCTTGTCCTTGACCTCCCGAGAAACTCCTCAGCTGCACCCTGAAATTTT
GAGACTCTTTGGAGAGTTGCCTTTTGGTATTCGAAAGTTCAAACTCCAGT
TTGTCTGTTGCACTACACAGATGTAGGTCCAAGCTCTTACTTCCTCCCGC
GCGTTGGCCCTGAAAGCTCTCTCACACTCAAAGAAATCGACCAGTTGGGG
CCGACGGCTCATCCATTCGATCTGGGTGCAGAGAATCGCGATGAACGGTC
ACGGATCGTTGGCGTGCGTGTGCACGCGACGGGGTATGTAAATGTGAATA
GTTCCACGCCGGTAACTGCCACCTCGCGCGCGCGGTAGCATTTTGCATGT
ACGCATGCGGGTTGACAGCTCTACAGTTCTGTTGCGCCATTGCCATTTAT
TCTATCGTGCGGAAAAGTGTTGAAGTCTAGGATTCACGTCCGGTATGCGG
GCCGATTAATGCAGGGCGAGGTGGCGTGCATGGTGTGTTCGACGTGTACC
TGCGCCGTCTCGGGCTAAATTGTTGGGCGCGAAAAGGCCGGCGAGTGTAT
CTCGCTGCGGCCTTCGTTTCGTCGCTTCCGCCTGGGAGCGGCAGAGACCA
CATTAATGACCCGGGGAGCGGAGGTTTGGTGTGTGTTCCCCTTTCGAACG
ATGCCGAGCATGGGTGCGAGGAGGCTGCTTCAGCCTTTCGAGGGAGTCGC
GGAGGGTCAATCTTCGATGGTGCGTCATAGCGTTGACATTGCTCTTTGTG
GCGGGCGGGCGCATCTTAGGAAGGTCAACGTTTTGCCGCTCTTTTTCGGC
GATGTCGGTAGCTTCGGTTCGTTAGATCGCTTTAAACAAACGTGTGAAGT
CCTGCGCAGCAACTAGCTTCACGCTACTCGCGTCCTCCTTGCACTCGTTC
TCGCCCTTACTCCCCGGTTAATAACAATCGAAAAACCAGGTGGCGGCGCT
GCTGACCAACAGGGTCCCGGTCGTCCAGGGGGGGGCGGAGGTGCTCGAGC
TCAGCGCCAGGGACACGAAGACCCTTTACTACCTGCCCACAGGGGGCGTG
CGACGGGTGACATTGTCCACCGTAAAGGACCTCGAAAACGTACGTGTGCA
CATGCTTGCTGCAACGGCTTGATAATTTTTCCCGCTGCCTATTCCTTGTG
CTTGCTGGTGTAGATACTGACGCATGTCGCCTTGTCTCTCGAGGTTTCAC
CTGAAACTGCATGTACTAAGATGATTGTTTAAGCTTTTTGTCGATGCCCT
GCCTTTTGTTCTGCCCCGTCCTCCTTGTCGTGTTTCCCCCCTCCATCGTT
TCTGCTTGTCTTCTCGTTCGCCGTGTGCTGGTGCTGGTGCTGGCATCGGC
GATCCGTGCTGGTGCTGGTTGCTGCAGGAGATCGTGAACGGCGCGGCCAT
TCAGGCGAAGATCCCCACCGCTCTCGTGCGGAAGCAGGAAAGGGGCAAGG
TCAGCTGCGCCACAGGAACGATGGACTGCGTCGTGTCTGTCTACGGCTTC
TCGAGCGGAGTGGCCGCAGAATCCGGCGAAGGCGGCGCTACCACGCTGAG
GGAATTGGTGTCGGAGGCGGCTCGCGTTCTGAAGCCCGGCGGGACGCTGC
TCTTTGTCGAGAGGGGGGAGTCCCAGGAGTTGGTGCGCGACACGAAATGA
ACACGTACCAGTGGTGAAAGAATGGAAAACGGTGGTTCGTTCTACTGTTT
CCTGCCAGTTGGAGAACGTGGGGATGAAAGAACGGACAAACAGTACGTAC
AACCGGACATCTCTGGCCTGGACGAACGTTTCGAGCTCCACGCGGGCTAG
CCACCTGTCATGACCATTTACGTGTGTCGTTGCCGCGACCGTTTCCATCG
GTGTCGCGCTCGTTTTTACCTTTTGCCGTGTACTTTTGCGGCCCGATTAT
GACATTCGTACTAAAGCATCGTCAACCCCCCCTGTATATTTGTATGGGGC
GGGTACGTTCTTGAATGGCATGGCATGGTACACGACGCCGCTCTTTTGCG
CGCTCTCTCCCATCGATGGACGAAAAGCATTTCTTGAAAAATGCTATCCC
GGCGGTCGTGGACGGAAAAACGTAGGTGGACGAAGTGCGGGATGTCTTGG
GTGCAGTGGACGTCAACATGGTCACCAACCTCGTGGATCCGTACTGCGTA
GCTATGGGAACCAAGACCAAGGTGGTGAGTGAAGGGCAAGGGTAAGAAGT
GAAGTCGTCGCCGCCCGCCTGAAGACGGTCAGAAATAGTGCGTCAGAGGG
GCTTTGGTTTCAAGGCGTCGCTACGTAGCGCTACACTCTGCATTGCGTGT
CCACGACACGGATACTGCTGAGTCTTGTTCATGGATGCATACATCGTACC
CAGTCAATCCCCGCTCGAACTAGCTGCAGCGCAGTTGAGGCTGTCGTCCG
TGCGCAAGATTAGTAAGCCTTTGGCCGTACATTCTAGGATGCTGTTGACC
CTTCATGTGAATGGCCGCATGCAGCACTGCGCTTCGCGTTTGGTGAATGC
ATGAGCCTGGGCTGGTGAAAACCGGGCAAATCGCTCCGTCCCGGCCTCAA
AGGGATGCGAGGTTTACGGCCTAACGTCTACCGCATGCGTGAATTGCGTA
TGACCCCCCGCCCCCTCGCTCTATTTGCCTCATCCAAAGCACAAGTCGTG
AAAGTTCTGGACACGATTGTCTGGCACACGAGACACCGAGCGGCTCTCCG
GGGGAAAAAACGTATTTGACCGGCGTTGCCCTCCTCATCGCCAAATCATT
TCTTCTGTCCTCCTTGAGCCCTCAGTAGCACCCCACCTTGCTTCCGCTCG
CTTGGCCCGCTCTACCGCGGTGGTGCACTCCCTGTTCTCATTGATTCCCT
TTCCACTGTTTCCTATAAGGTGAACCCGTAATCGTGTTTTCCTTTGCAAT
CCACACCCTCTTGCTCCCCTTATTTTCGTTCAATCATGCCCTCGGTGGCT
CAGACGGAGGAAGCGGTGGGGACGGCACTCGGGGAGAACGGAAAGACAAG
GGAAGGCCGCAACCGACGGGAGCGGCGGCTGATGAAGAAGGCTTCGACAC
CCGGGAAGGACTAAAATAGATAAGATTTTTTGTTGTGTTATTCGATAACG
TGCGGCCGAGTGGGCTGGACAACAAGAACATAACAGCGTCAACCAAGCTC
CGTTTCATCATTCTCGGTTGCAGCTTTTCGTGGACCACACGGAGAAACAT
GTATGCCTGGGAACGGACGACAGGTACGTCTTGTGACGGTGCTGGTGTGT
TAAGTGAGCGGGGCTCGACTCTTGTCCAGGGGCCGGTGTCATGTTGCGAC
TGGCTGTGGAAACGTTTGAGGGGAACGGCGGCGTTTCACCCGGTATCAGC
ATCGCGTGAGAGTGAGAATCGATTCAAGACCAGATACTTTACCTCGGCTA
TTAGGACAGAAGAATGTAGTGGAACCTGCGTCGACCCGGTAGATAGGCGA
TGGGTTCTGAACGTGCGGGATCAGCGGCGGGCTTTTGCTTCGTCGCACAA
TGGTAGACTATACGAGTCGGTTGGTGCGACTGCCGGCATGATTTGCCTCA
ATCCGGCAGCGCTGGGAGCGAGCAAATCGTTTGTGTTTGTGACACGTGGA
CGGCCGGCAAGATCGGTGTGTATTGTTGTGATTCGCTTTGGCGTTGTATG
GGTCGTAGCCGCTGTTGATGACCGCCGTGAACATTCCCGCGTTCTACTGT
TTTTTGTGGGACTGACGTATGCACGCATCCCCATGGCGGATTCGTAGGCA
AATTCGCGACATATTCGAAGTATTTATGCGCGTTGGGTGCCTGTCCCTGC
GGATTGTGGGCTACATAGTCTCTTCTTGGTCATTTCGTTTTGTCCAGAAT
GTTTGCTTGTGTTTTATTTTCCTACAACAAGACCATTTCCCTCTAGTATG
TGGCTATGAGGCACGTTTGTCGTCCAATTGTTTCGTGAGGACCAGTTCGG
CGCGAGGAATGTAATACCGGGTGCTACTGCTAGTCCGAGCTGCGTTTGGT
GATTAGCAGCGGCTCCACGACGAAGCAAGCGGGGAAATCGACGCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:3928328..3933272+

>mRNA_P-fluviatile_contig1.325.1 ID=mRNA_P-fluviatile_contig1.325.1|Name=mRNA_P-fluviatile_contig1.325.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2052bp|location=Sequence derived from alignment at P-fluviatile_contig1:3928328..3933272+ (Porterinema fluviatile SAG_2381)
ATGGCGATCTTCAAGACTAGGAAAACTAGCGTTCGTGCGATCCTGCTGCT
GAGTTTGGCGAGATTGGTCACGCCGGTCGGCGGATTTGTCTCACCTCCAC
GACTAAAGTTGAACACCGTATCATCAGGTCTCCCACGCTACAGCAGCAGC
AGCAGTAGCAGCAGATGGCGACTGATCCCGACAGCCATGCTCCCGGCAGG
AGAAGCAGAGCCGCTGCAGCAGTTATCATCGGCGGCTTTGCATGCTACTG
GGACTGTGGGTGTTGATGGGGTGGCAGCAGGAAGCGTGTTGCTGTCGGAG
GCCGGGATGGGCGACATGGATCCGGTCAAGCTCGGCCTGTTCGCTGTTGC
GGGGCTTGGTGTTGCCGCCGCTGGGTTCTCGACCGCCGTGTACTGGCGCA
TGCAGTACGTGATGGCGATCTTCAAGACTAGGAAAACTAGCGTTCGTGCG
ATCCTGCTGCTGAGTTTGGCGAGATTGGTCACGCCGGTCGGCGGATTTGT
CTCACCTCCACGACTAAAGTTGAACACCGTATCATCAGGTCTCCCACGCT
ACAGCAGCAGCAGCAGTAGCAGCAGATGGCGACTGATCCCGACAGCCATG
CTCCCGGCAGGAGAAGCAGAGCCGCTGCAGCAGTTATCATCGGCGGCTTT
GCATGCTACTGGGACTGTGGGTGTTGATGGGGTGGCAGCAGGAAGCGTGT
TGCTGTCGGAGGCCGGGATGGGCGACATGGATCCGGTCAAGCTCGGCCTG
TTCGCTGTTGCGGGGCTTGGTGTTGCCGCCGCTGGGTTCTCGACCGCCGT
GTACTGGCGCATGCAGTACGTGGTGGCGGCGCTGCTGACCAACAGGGTCC
CGGTCGTCCAGGGGGGGGCGGAGGTGCTCGAGCTCAGCGCCAGGGACACG
AAGACCCTTTACTACCTGCCCACAGGGGGCGTGCGACGGGTGACATTGTC
CACCGTAAAGGACCTCGAAAACGTGGCGGCGCTGCTGACCAACAGGGTCC
CGGTCGTCCAGGGGGGGGCGGAGGTGCTCGAGCTCAGCGCCAGGGACACG
AAGACCCTTTACTACCTGCCCACAGGGGGCGTGCGACGGGTGACATTGTC
CACCGTAAAGGACCTCGAAAACGAGATCGTGAACGGCGCGGCCATTCAGG
CGAAGATCCCCACCGCTCTCGTGCGGAAGCAGGAAAGGGGCAAGGTCAGC
TGCGCCACAGGAACGATGGACTGCGTCGTGTCTGTCTACGGCTTCTCGAG
CGGAGTGGCCGCAGAATCCGGCGAAGGCGGCGCTACCACGCTGAGGGAAT
TGGTGTCGGAGGCGGCTCGCGTTCTGAAGCCCGGCGGGACGCTGCTCTTT
GTCGAGAGGGGGGAGTCCCAGGAGTTGGAGATCGTGAACGGCGCGGCCAT
TCAGGCGAAGATCCCCACCGCTCTCGTGCGGAAGCAGGAAAGGGGCAAGG
TCAGCTGCGCCACAGGAACGATGGACTGCGTCGTGTCTGTCTACGGCTTC
TCGAGCGGAGTGGCCGCAGAATCCGGCGAAGGCGGCGCTACCACGCTGAG
GGAATTGGTGTCGGAGGCGGCTCGCGTTCTGAAGCCCGGCGGGACGCTGC
TCTTTGTCGAGAGGGGGGAGTCCCAGGAGTTGGTGGACGAAGTGCGGGAT
GTCTTGGGTGCAGTGGACGTCAACATGGTCACCAACCTCGTGGATCCGTA
CTGCGTAGCTATGGGAACCAAGACCAAGGTGGTGGACGAAGTGCGGGATG
TCTTGGGTGCAGTGGACGTCAACATGGTCACCAACCTCGTGGATCCGTAC
TGCGTAGCTATGGGAACCAAGACCAAGGTGACGGAGGAAGCGGTGGGGAC
GGCACTCGGGGAGAACGGAAAGACAAGGGAAGGCCGCAACCGACGGGAGC
GGCGGCTGATGAAGAAGGCTTCGACACCCGGGAAGGACTAAACGGAGGAA
GCGGTGGGGACGGCACTCGGGGAGAACGGAAAGACAAGGGAAGGCCGCAA
CCGACGGGAGCGGCGGCTGATGAAGAAGGCTTCGACACCCGGGAAGGACT
AA
back to top