mRNA_P-fluviatile_contig2.3673.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3673.1
Unique NamemRNA_P-fluviatile_contig2.3673.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig2.3673.1 vs. uniprot
Match: D8LCZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ4_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 1.940e-68
Identity = 190/429 (44.29%), Postives = 230/429 (53.61%), Query Frame = 1
Query:  172 FVDKDRPPLEGLKGLGLMRAMRALDGLRKHHATVAEENTLGASGRLDVQDRAGILALCGCQRGCRLTADEMKTIQRLTNGMVGTWVLLERQFQKLASEIRSK-TADQASHQRE-LGAFFEVADTWLAYHDEVRVLAARKQTELRLESSPSAGTGGRNVGSPARAKSLPTFPTWLSTLVERYQIEQGRWLEDGKPKRGDGNPSPESGASTAHELARDTARKSGLSREGEEARQSGLQTSSDTRTTGAVGEGLPVGGSRDPANSKAACITGDGGGAAAGDAEASADRDDAALDSDAATLVDSLARFSLYLALLVESGQGGQTPSTTKAERAALAELLRASDDGSDRRERIDPSLPHPLKTSN--HEGVLPPSPTRLRPRPS-PVGPPRSPRPLRYWARRIHRFLLSVRELKAVPDRDAEALEAIMSELRRG 1443
            FVD+D P LE L+ LGL +AMRALDGLRKH+AT AEE+ LGASGRLD QDRAG+L LCGCQRGCRLT+DEMKT+QRLT GM G +  LE QF+ LA ++R + +A + S + E  GAFF  A     +H +              +S     + G + G  A                              KP+RG    S    A+++ +    T    G  R  EE++ + + T+    TT A  EGL    S +          G GG A                   A   + SL RFS YLALLV S Q   TPS  + ER+ALAELLRASDDGSD       +  HP  TSN  H+   P +P    P PS PVG P SPRPLRYWARRIHRFLLSVREL+ VPDRD  +LE IM E RRG
Sbjct:   22 FVDEDLPVLEDLRRLGLTKAMRALDGLRKHNATKAEESMLGASGRLDTQDRAGLLTLCGCQRGCRLTSDEMKTVQRLTRGMDGLFASLELQFETLAPKLRKRVSAGEGSARSEAFGAFFPAA----FHHPK--------------DSCQGCDSNGDDGGGSA------------------------------KPERGLQQASSFDNATSSTKAVGYTTTSMGP-RSTEESKITPISTT----TTAA--EGLVERNSDEKG--------GTGGRA----------------PECAGPPMGSLVRFSRYLALLVASAQEEHTPSANECERSALAELLRASDDGSDSGSSGVVNTRHP-GTSNIVHQNQSPAAPA---PGPSTPVGSPGSPRPLRYWARRIHRFLLSVRELRTVPDRDLASLEEIMLEARRG 367          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCZ4_ECTSI1.940e-6844.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:241805..245268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001650.1
Exons7
Model size1449
Cds size1449
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815825.1076748-CDS-P-fluviatile_contig2:241804..2421221622815825.1076748-CDS-P-fluviatile_contig2:241804..242122Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 241805..242122 +
1693563436.42008-CDS-P-fluviatile_contig2:241804..2421221693563436.42008-CDS-P-fluviatile_contig2:241804..242122Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 241805..242122 +
1622815825.1186368-CDS-P-fluviatile_contig2:242312..2424651622815825.1186368-CDS-P-fluviatile_contig2:242312..242465Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 242313..242465 +
1693563436.439988-CDS-P-fluviatile_contig2:242312..2424651693563436.439988-CDS-P-fluviatile_contig2:242312..242465Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 242313..242465 +
1622815825.1308389-CDS-P-fluviatile_contig2:243056..2432161622815825.1308389-CDS-P-fluviatile_contig2:243056..243216Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 243057..243216 +
1693563436.4523895-CDS-P-fluviatile_contig2:243056..2432161693563436.4523895-CDS-P-fluviatile_contig2:243056..243216Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 243057..243216 +
1622815825.1404653-CDS-P-fluviatile_contig2:243855..2439371622815825.1404653-CDS-P-fluviatile_contig2:243855..243937Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 243856..243937 +
1693563436.4650078-CDS-P-fluviatile_contig2:243855..2439371693563436.4650078-CDS-P-fluviatile_contig2:243855..243937Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 243856..243937 +
1622815825.1501477-CDS-P-fluviatile_contig2:244188..2446531622815825.1501477-CDS-P-fluviatile_contig2:244188..244653Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 244189..244653 +
1693563436.4756517-CDS-P-fluviatile_contig2:244188..2446531693563436.4756517-CDS-P-fluviatile_contig2:244188..244653Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 244189..244653 +
1622815825.1630883-CDS-P-fluviatile_contig2:244859..2449351622815825.1630883-CDS-P-fluviatile_contig2:244859..244935Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 244860..244935 +
1693563436.4856179-CDS-P-fluviatile_contig2:244859..2449351693563436.4856179-CDS-P-fluviatile_contig2:244859..244935Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 244860..244935 +
1622815825.1819546-CDS-P-fluviatile_contig2:245073..2452681622815825.1819546-CDS-P-fluviatile_contig2:245073..245268Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 245074..245268 +
1693563436.4949164-CDS-P-fluviatile_contig2:245073..2452681693563436.4949164-CDS-P-fluviatile_contig2:245073..245268Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 245074..245268 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3673.1prot_P-fluviatile_contig2.3673.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 241805..245268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3673.1

>prot_P-fluviatile_contig2.3673.1 ID=prot_P-fluviatile_contig2.3673.1|Name=mRNA_P-fluviatile_contig2.3673.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=483bp
MESNIAPPTAPPPPPPPPPPPLPPTPPPAPAAQHDSCPIFSTPVSKKCSF
DVKDCRVFVDKDRPPLEGLKGLGLMRAMRALDGLRKHHATVAEENTLGAS
GRLDVQDRAGILALCGCQRGCRLTADEMKTIQRLTNGMVGTWVLLERQFQ
KLASEIRSKTADQASHQRELGAFFEVADTWLAYHDEVRVLAARKQTELRL
ESSPSAGTGGRNVGSPARAKSLPTFPTWLSTLVERYQIEQGRWLEDGKPK
RGDGNPSPESGASTAHELARDTARKSGLSREGEEARQSGLQTSSDTRTTG
AVGEGLPVGGSRDPANSKAACITGDGGGAAAGDAEASADRDDAALDSDAA
TLVDSLARFSLYLALLVESGQGGQTPSTTKAERAALAELLRASDDGSDRR
ERIDPSLPHPLKTSNHEGVLPPSPTRLRPRPSPVGPPRSPRPLRYWARRI
HRFLLSVRELKAVPDRDAEALEAIMSELRRGAG
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mRNA from alignment at P-fluviatile_contig2:241805..245268+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3673.1 ID=mRNA_P-fluviatile_contig2.3673.1|Name=mRNA_P-fluviatile_contig2.3673.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3464bp|location=Sequence derived from alignment at P-fluviatile_contig2:241805..245268+ (Porterinema fluviatile SAG_2381)
ATGGAGTCGAATATTGCACCTCCGACGGCCCCACCGCCGCCGCCTCCGCC GCCGCCGCCTCCGCTGCCGCCTACTCCGCCACCGGCGCCAGCGGCTCAGC ATGATTCCTGCCCTATCTTCTCTACACCAGTGTCGAAGAAGTGCTCGTTC GACGTCAAAGATTGCCGGGTCTTCGTGGACAAAGATCGTCCTCCCTTGGA GGGGCTCAAGGGGTTGGGGCTCATGCGAGCGATGCGGGCATTGGACGGGC TGAGGAAACACCACGCAACCGTGGCAGAGGAGAACACTCTCGGTGCAAGT GGCAGGCTTGATGTACAGGTGGGAGATACTTCAAAGTGGTTGACACTTAG ACGCGTGTAGCGTAGCATCTGTTTTTGCGCAAGCTTGTGTCCGATTTGAG GCATGCACTCGGTCTACACAGACAACTGGTTCTGGTCTCAGCGGCAGTAC GGCGAGACGGCGAACCTCAAATCGTTTCCTGCTGCCTCATGTGCCGATCT CTTCAAAGGATCGTGCGGGGATTTTGGCCCTCTGTGGTTGTCAACGTGGT TGTCGACTCACTGCGGACGAGATGAAGACGATCCAACGCTTGACTAACGG GATGGTCGGAACCTGGGTCCTCTTGGAGCGGCAGTTCCAAAAGCTCGCCT CCGAGATTCGGGTGAGTACCTCAACATGCGATAATGACATCCGCGAGGGC GATCCATGCCGCGTTCGCGGGGGTACTCCTTATTCACACATCCATACTAC TTTCAAACAGTTCCTCGAGCGAGGGGCTCCAAAAAATACCCCCCCTGCCT CGGCATTGCTCGGATTAGACATTAGCTGGCAGGTATTTCTCACGTTCGGC TCACATAATAGTCTAGACTAGGCAGCGACGTAATGCTCAGCAGTGGTGTG AACGGTTTCTTCAGTTTCCGATGGGTGGGTCGCTTCAACCACCTCCCATG TTTGTACAATCCAGATACAAAGACGACACGTTTGATTACGGCATTGTGCG CCGTCGATGGCCATTCTGCTACATGCAGGCTAATTTTCCGCACGAGATAG TGCGGGGAAGGCTTAAAGATTTGCCACAACCAGTTCGTAAAACTTGCCCC ACTAGCGGTGTCAAAGAATCACCATTCCACACGTCCGTACACGTTTGCCC CCTCGCTCACCCCGCCTCAGTGATGCACGGCTATCTACGCTCTGATTCCG GAGGCCTCCTCGCTCCTCATGTCTCGCTTTCCACTCCTCACCCTAGAGTC AGAGCAAGACGGCCGATCAAGCGAGCCATCAGCGCGAACTCGGGGCGTTT TTTGAGGTGGCGGATACTTGGCTAGCGTACCACGACGAAGTGCGGGTGTT GGCCGCCAGAAAACAGACTGAGCTGCGGCTGGAATCCAGTCCCTCAGCAG GAACTGGAGGTAGTACTTGTGCTCGCCCGAGTTTAAGTCTGATCATACCT CGAGATAGGAGTGAGTACAATACCAGGAGAAATTCCTCTCAAGGATGGAT GCATCCCAACGTTCGTGCGACCAGCCGAAAGACTCACGACGATTCCCGCT GGGTGGGCATTATATCGAAAAAAACAATACGGCCTGCCTGCGTGCCGCCT GCCAAACGGCGAAACTGGCCGGTCATGGAAACGTCAGCGCGATCCGTCCC CCGGCTTGTCTGGATGTTTGAGAAGTGCTTATTGTTGGATGAATCTACGG TACAGCACAAGAACAACAAACATTTTGTTCCAACACCGCCGTGTCGCTAT GAGTACTTCGTCGAGGATATCACGCTCTTCTTCAGGATACTGTTGTTGCA CGTCCCTTCCGCGAGCTCAGAATCGGCGAGGGTTATCGATACTTCGAAGT ATCAAGTTAAGTCCCGGTACGAAGCGACCGCTGCCGACGCTTGTCGAGGG TTTATGAATATCTCGTGATCAAATTGTCTGAAATACGTTGTGGCTGCATA GGTGGTGCAGTCCGGTGCTCCGTTCGTGGTTTATCCGAACGTGTCCGAAC AAAACATTTGCTTCACGCCGCAAAAACATGTCGCTTTGGCGTAAATCACA GGAAACGTTGGAAGTCCAGCGCGGGCGAAGAGTCTGCCGACCTTTCCTAC TTGGCTCTCTACCCTCGTAGAGCGCTATCAAATGTGAGGGAGAGATCGGA GAGCAGGTGGTAGACGGAGCATTCTGATTTGGGCCTCTCCTTCCACACTT TCGTTTGTGCGGGTAGGACACGACACGAGAAAGAAAGAATGTGTGAAACG AAAACACGAAGTAAAACATACGTCAACAAAAAGTCCTGCATTGAAAGCAA CCACGATCACCGACAGGTTTAGGGTAGACACCCTGTCGTCATCGATGCTC GCTCTTTCCCCCTCATGGGCCAACATGTGCCCAGCGAACAGGGTCGGTGG CTGGAAGACGGAAAACCAAAACGCGGCGACGGCAATCCTTCGCCCGAATC CGGCGCTTCCACGGCCCATGAGCTGGCACGTGATACCGCAAGGAAGAGCG GCTTGAGTAGAGAAGGCGAGGAAGCTAGGCAGAGCGGGCTCCAGACTTCC TCGGACACGAGAACCACCGGCGCCGTCGGGGAAGGGCTCCCCGTGGGGGG GAGTCGAGACCCGGCGAACTCGAAGGCTGCTTGCATAACCGGGGACGGAG GTGGAGCAGCTGCAGGAGACGCGGAAGCAAGCGCAGACCGGGATGACGCC GCCCTCGACTCCGATGCTGCAACTTTGGTAGACAGTTTGGCGAGATTCAG CCTCTACTTGGCGCTGCTCGTCGAATCGGGGCAGGGAGGGCAGACGCCGT CCACGACCAAGGCGGAGAGAGCCGCGCTGGCGGAGTTGCTTCGCGCAAGG TAGTTCTTTTGGTAGGGAAAGGGCGCGCAGCTCTCTGCGTGTATTTGTCG GTTGAACTTTTTTCAACAGGGGCTCAATTCCAGTCGAGCCAGCGTCACGC CCTTATCTTGTCGAATATGGTTCGCAGTATGATCTTTTCATGATCCTCGT TCACTGCTTCATGTACGCTGCCTGCTCGACTAATCTGGCCTGACTTCGGC ACCAGTGACGACGGGTCTGATCGTCGGGAGCGAATCGACCCCAGTTTGCC GCATCCACTCAAAACCAGCAACCACGAAGGCGTCCTCGAGACGAAGGGCG ACAGGAAGGGTGGTGACAGGCCACAACCACCGACGATTCCATCACCCTCA TCGCCACCACCACAACCACCACCACCACCACCACCATCAGCGTCACCACC AACACCATCACCGCCAGAGGTACTACCACCGTCGCCGACGAGACTCAGAC CTCGCCCTTCACCGGTGGGACCTCCGAGATCGCCGCGGCCGCTTCGATAC TGGGCGCGGAGAATCCACCGCTTTTTACTGAGCGTTCGGGAGCTCAAGGC CGTGCCGGACCGTGACGCAGAGGCGCTCGAGGCGATCATGTCTGAACTAA GGAGAGGTGCGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:241805..245268+

>mRNA_P-fluviatile_contig2.3673.1 ID=mRNA_P-fluviatile_contig2.3673.1|Name=mRNA_P-fluviatile_contig2.3673.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2898bp|location=Sequence derived from alignment at P-fluviatile_contig2:241805..245268+ (Porterinema fluviatile SAG_2381)
ATGGAGTCGAATATTGCACCTCCGACGGCCCCACCGCCGCCGCCTCCGCC
GCCGCCGCCTCCGCTGCCGCCTACTCCGCCACCGGCGCCAGCGGCTCAGC
ATGATTCCTGCCCTATCTTCTCTACACCAGTGTCGAAGAAGTGCTCGTTC
GACGTCAAAGATTGCCGGGTCTTCGTGGACAAAGATCGTCCTCCCTTGGA
GGGGCTCAAGGGGTTGGGGCTCATGCGAGCGATGCGGGCATTGGACGGGC
TGAGGAAACACCACGCAACCGTGGCAGAGGAGAACACTCTCGGTGCAAGT
GGCAGGCTTGATGTACAGATGGAGTCGAATATTGCACCTCCGACGGCCCC
ACCGCCGCCGCCTCCGCCGCCGCCGCCTCCGCTGCCGCCTACTCCGCCAC
CGGCGCCAGCGGCTCAGCATGATTCCTGCCCTATCTTCTCTACACCAGTG
TCGAAGAAGTGCTCGTTCGACGTCAAAGATTGCCGGGTCTTCGTGGACAA
AGATCGTCCTCCCTTGGAGGGGCTCAAGGGGTTGGGGCTCATGCGAGCGA
TGCGGGCATTGGACGGGCTGAGGAAACACCACGCAACCGTGGCAGAGGAG
AACACTCTCGGTGCAAGTGGCAGGCTTGATGTACAGGATCGTGCGGGGAT
TTTGGCCCTCTGTGGTTGTCAACGTGGTTGTCGACTCACTGCGGACGAGA
TGAAGACGATCCAACGCTTGACTAACGGGATGGTCGGAACCTGGGTCCTC
TTGGAGCGGCAGTTCCAAAAGCTCGCCTCCGAGATTCGGGATCGTGCGGG
GATTTTGGCCCTCTGTGGTTGTCAACGTGGTTGTCGACTCACTGCGGACG
AGATGAAGACGATCCAACGCTTGACTAACGGGATGGTCGGAACCTGGGTC
CTCTTGGAGCGGCAGTTCCAAAAGCTCGCCTCCGAGATTCGGAGCAAGAC
GGCCGATCAAGCGAGCCATCAGCGCGAACTCGGGGCGTTTTTTGAGGTGG
CGGATACTTGGCTAGCGTACCACGACGAAGTGCGGGTGTTGGCCGCCAGA
AAACAGACTGAGCTGCGGCTGGAATCCAGTCCCTCAGCAGGAACTGGAGG
TAAGCAAGACGGCCGATCAAGCGAGCCATCAGCGCGAACTCGGGGCGTTT
TTTGAGGTGGCGGATACTTGGCTAGCGTACCACGACGAAGTGCGGGTGTT
GGCCGCCAGAAAACAGACTGAGCTGCGGCTGGAATCCAGTCCCTCAGCAG
GAACTGGAGGTAGAAACGTTGGAAGTCCAGCGCGGGCGAAGAGTCTGCCG
ACCTTTCCTACTTGGCTCTCTACCCTCGTAGAGCGCTATCAAATGAAACG
TTGGAAGTCCAGCGCGGGCGAAGAGTCTGCCGACCTTTCCTACTTGGCTC
TCTACCCTCGTAGAGCGCTATCAAATCGAACAGGGTCGGTGGCTGGAAGA
CGGAAAACCAAAACGCGGCGACGGCAATCCTTCGCCCGAATCCGGCGCTT
CCACGGCCCATGAGCTGGCACGTGATACCGCAAGGAAGAGCGGCTTGAGT
AGAGAAGGCGAGGAAGCTAGGCAGAGCGGGCTCCAGACTTCCTCGGACAC
GAGAACCACCGGCGCCGTCGGGGAAGGGCTCCCCGTGGGGGGGAGTCGAG
ACCCGGCGAACTCGAAGGCTGCTTGCATAACCGGGGACGGAGGTGGAGCA
GCTGCAGGAGACGCGGAAGCAAGCGCAGACCGGGATGACGCCGCCCTCGA
CTCCGATGCTGCAACTTTGGTAGACAGTTTGGCGAGATTCAGCCTCTACT
TGGCGCTGCTCGTCGAATCGGGGCAGGGAGGGCAGACGCCGTCCACGACC
AAGGCGGAGAGAGCCGCGCTGGCGGAGTTGCTTCGCGCAAGCGAACAGGG
TCGGTGGCTGGAAGACGGAAAACCAAAACGCGGCGACGGCAATCCTTCGC
CCGAATCCGGCGCTTCCACGGCCCATGAGCTGGCACGTGATACCGCAAGG
AAGAGCGGCTTGAGTAGAGAAGGCGAGGAAGCTAGGCAGAGCGGGCTCCA
GACTTCCTCGGACACGAGAACCACCGGCGCCGTCGGGGAAGGGCTCCCCG
TGGGGGGGAGTCGAGACCCGGCGAACTCGAAGGCTGCTTGCATAACCGGG
GACGGAGGTGGAGCAGCTGCAGGAGACGCGGAAGCAAGCGCAGACCGGGA
TGACGCCGCCCTCGACTCCGATGCTGCAACTTTGGTAGACAGTTTGGCGA
GATTCAGCCTCTACTTGGCGCTGCTCGTCGAATCGGGGCAGGGAGGGCAG
ACGCCGTCCACGACCAAGGCGGAGAGAGCCGCGCTGGCGGAGTTGCTTCG
CGCAAGTGACGACGGGTCTGATCGTCGGGAGCGAATCGACCCCAGTTTGC
CGCATCCACTCAAAACCAGCAACCACGAAGGCTGACGACGGGTCTGATCG
TCGGGAGCGAATCGACCCCAGTTTGCCGCATCCACTCAAAACCAGCAACC
ACGAAGGCGTACTACCACCGTCGCCGACGAGACTCAGACCTCGCCCTTCA
CCGGTGGGACCTCCGAGATCGCCGCGGCCGCTTCGATACTGGGCGCGGAG
AATCCACCGCTTTTTACTGAGCGTTCGGGAGCTCAAGGCCGTGCCGGACC
GTGACGCAGAGGCGCTCGAGGCGATCATGTCTGAACTAAGGAGAGGTGCG
GGGGTACTACCACCGTCGCCGACGAGACTCAGACCTCGCCCTTCACCGGT
GGGACCTCCGAGATCGCCGCGGCCGCTTCGATACTGGGCGCGGAGAATCC
ACCGCTTTTTACTGAGCGTTCGGGAGCTCAAGGCCGTGCCGGACCGTGAC
GCAGAGGCGCTCGAGGCGATCATGTCTGAACTAAGGAGAGGTGCGGGG
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