mRNA_P-fluviatile_contig2.3885.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3885.1
Unique NamemRNA_P-fluviatile_contig2.3885.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:1960603..1961221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size620
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.0947537-UTR-P-fluviatile_contig2:1960602..19609031622815820.0947537-UTR-P-fluviatile_contig2:1960602..1960903Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1960603..1960903 +
1693563428.4025607-UTR-P-fluviatile_contig2:1960602..19609031693563428.4025607-UTR-P-fluviatile_contig2:1960602..1960903Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1960603..1960903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815820.1081066-CDS-P-fluviatile_contig2:1960903..19612211622815820.1081066-CDS-P-fluviatile_contig2:1960903..1961221Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1960904..1961221 +
1693563428.4102714-CDS-P-fluviatile_contig2:1960903..19612211693563428.4102714-CDS-P-fluviatile_contig2:1960903..1961221Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1960904..1961221 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3885.1prot_P-fluviatile_contig2.3885.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 1960904..1961221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3885.1

>prot_P-fluviatile_contig2.3885.1 ID=prot_P-fluviatile_contig2.3885.1|Name=mRNA_P-fluviatile_contig2.3885.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=106bp
MSRKRHAYALLRGNCFARFSLPAQNLRGGQMRGWNAMAFLRDLNFCLAST
LSLSSCAQVVAFRFPLSSSFAPSPPPCYLPRSTSLYDLPLPSARCNQVLI
EAKCPD
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mRNA from alignment at P-fluviatile_contig2:1960603..1961221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3885.1 ID=mRNA_P-fluviatile_contig2.3885.1|Name=mRNA_P-fluviatile_contig2.3885.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=619bp|location=Sequence derived from alignment at P-fluviatile_contig2:1960603..1961221+ (Porterinema fluviatile SAG_2381)
TCCTTTTCGTGTGTTTTGTGTATTTTTTTCTCGAAGGAGTCTGCATGAGT
CGCTGTACAGCCGAAGGTGAGCCGAACGTGCATTTGTGTGTGGGTACTTC
CCCCCCGAGGGCCCACAGAGCGTGGATTCGCGAGACGCCGTCTCGTTTCT
GCATCGCACCCGAGGAGAGTTCAACGGCGCTTCGGGAGGAGCGGGCCTAG
CAGCTGCTTTGCTGTCGGATTCAGGCGTCACCGGTGTCGTGCAAAGGTGT
TCCACCGTCCTCATCGAGACCCAATCCTTTGGGGTGCCTTATGACGAGGG
GATGTCGCGAAAGCGACACGCCTATGCACTACTACGTGGTAATTGTTTTG
CTCGTTTTTCGCTTCCCGCACAGAATCTTCGCGGGGGTCAGATGCGCGGC
TGGAATGCAATGGCATTTCTCAGGGACTTGAATTTTTGTCTTGCCTCAAC
TCTGTCCCTGTCCAGTTGTGCTCAAGTTGTTGCTTTTCGATTCCCATTGT
CGTCATCCTTCGCACCCTCGCCTCCTCCCTGCTATCTCCCCCGCTCCACT
TCTCTCTATGACCTCCCCCTTCCCTCCGCCCGGTGCAACCAGGTCTTGAT
CGAGGCCAAGTGCCCCGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:1960603..1961221+

>mRNA_P-fluviatile_contig2.3885.1 ID=mRNA_P-fluviatile_contig2.3885.1|Name=mRNA_P-fluviatile_contig2.3885.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=636bp|location=Sequence derived from alignment at P-fluviatile_contig2:1960603..1961221+ (Porterinema fluviatile SAG_2381)
ATGTCGCGAAAGCGACACGCCTATGCACTACTACGTGGTAATTGTTTTGC
TCGTTTTTCGCTTCCCGCACAGAATCTTCGCGGGGGTCAGATGCGCGGCT
GGAATGCAATGGCATTTCTCAGGGACTTGAATTTTTGTCTTGCCTCAACT
CTGTCCCTGTCCAGTTGTGCTCAAGTTGTTGCTTTTCGATTCCCATTGTC
GTCATCCTTCGCACCCTCGCCTCCTCCCTGCTATCTCCCCCGCTCCACTT
CTCTCTATGACCTCCCCCTTCCCTCCGCCCGGTGCAACCAGGTCTTGATC
GAGGCCAAGTGCCCCGACATGTCGCGAAAGCGACACGCCTATGCACTACT
ACGTGGTAATTGTTTTGCTCGTTTTTCGCTTCCCGCACAGAATCTTCGCG
GGGGTCAGATGCGCGGCTGGAATGCAATGGCATTTCTCAGGGACTTGAAT
TTTTGTCTTGCCTCAACTCTGTCCCTGTCCAGTTGTGCTCAAGTTGTTGC
TTTTCGATTCCCATTGTCGTCATCCTTCGCACCCTCGCCTCCTCCCTGCT
ATCTCCCCCGCTCCACTTCTCTCTATGACCTCCCCCTTCCCTCCGCCCGG
TGCAACCAGGTCTTGATCGAGGCCAAGTGCCCCGAC
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