mRNA_P-fluviatile_contig2.3873.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig2.3873.1
Unique NamemRNA_P-fluviatile_contig2.3873.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig2.3873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig2contigP-fluviatile_contig2:1875923..1876293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size371
Cds size321
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815819.9339838-UTR-P-fluviatile_contig2:1875922..18759721622815819.9339838-UTR-P-fluviatile_contig2:1875922..1875972Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1875923..1875972 +
1693563428.3188972-UTR-P-fluviatile_contig2:1875922..18759721693563428.3188972-UTR-P-fluviatile_contig2:1875922..1875972Porterinema fluviatile SAG_2381UTRP-fluviatile_contig2 1875923..1875972 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815819.944254-CDS-P-fluviatile_contig2:1875972..18762931622815819.944254-CDS-P-fluviatile_contig2:1875972..1876293Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1875973..1876293 +
1693563428.3340409-CDS-P-fluviatile_contig2:1875972..18762931693563428.3340409-CDS-P-fluviatile_contig2:1875972..1876293Porterinema fluviatile SAG_2381CDSP-fluviatile_contig2 1875973..1876293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig2.3873.1prot_P-fluviatile_contig2.3873.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig2 1875973..1876293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig2.3873.1

>prot_P-fluviatile_contig2.3873.1 ID=prot_P-fluviatile_contig2.3873.1|Name=mRNA_P-fluviatile_contig2.3873.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=107bp
MRQLSPPTVVWIVAPLSPARPCQPEPRRQDAPRHDVPYTKKIAHPVRSIL
RFKNICHRVCFGMGACFLMEPRSGTLTYYRVRVSFGLGAPVYFLMGVCCL
VSHTVRR
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mRNA from alignment at P-fluviatile_contig2:1875923..1876293+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig2.3873.1 ID=mRNA_P-fluviatile_contig2.3873.1|Name=mRNA_P-fluviatile_contig2.3873.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=371bp|location=Sequence derived from alignment at P-fluviatile_contig2:1875923..1876293+ (Porterinema fluviatile SAG_2381)
TGGAGTATGGTGCTTGCATGCACGCACGGTAGCGGGGGGCCCTCTCTCGC
ATGCGGCAACTTTCTCCACCGACCGTGGTGTGGATTGTGGCCCCTCTCTC
GCCCGCACGCCCCTGCCAACCCGAACCAAGACGACAAGACGCGCCGCGCC
ATGATGTGCCGTACACGAAGAAGATAGCACACCCCGTTCGTAGCATTTTA
CGTTTCAAAAACATTTGTCACCGGGTGTGTTTTGGTATGGGTGCGTGCTT
TCTCATGGAGCCTCGTAGCGGGACCCTGACGTACTATCGGGTTCGGGTAT
CATTTGGACTAGGAGCACCCGTGTACTTTCTTATGGGGGTGTGCTGTCTT
GTGTCGCACACGGTACGCAGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig2:1875923..1876293+

>mRNA_P-fluviatile_contig2.3873.1 ID=mRNA_P-fluviatile_contig2.3873.1|Name=mRNA_P-fluviatile_contig2.3873.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=642bp|location=Sequence derived from alignment at P-fluviatile_contig2:1875923..1876293+ (Porterinema fluviatile SAG_2381)
ATGCGGCAACTTTCTCCACCGACCGTGGTGTGGATTGTGGCCCCTCTCTC
GCCCGCACGCCCCTGCCAACCCGAACCAAGACGACAAGACGCGCCGCGCC
ATGATGTGCCGTACACGAAGAAGATAGCACACCCCGTTCGTAGCATTTTA
CGTTTCAAAAACATTTGTCACCGGGTGTGTTTTGGTATGGGTGCGTGCTT
TCTCATGGAGCCTCGTAGCGGGACCCTGACGTACTATCGGGTTCGGGTAT
CATTTGGACTAGGAGCACCCGTGTACTTTCTTATGGGGGTGTGCTGTCTT
GTGTCGCACACGGTACGCAGGATGCGGCAACTTTCTCCACCGACCGTGGT
GTGGATTGTGGCCCCTCTCTCGCCCGCACGCCCCTGCCAACCCGAACCAA
GACGACAAGACGCGCCGCGCCATGATGTGCCGTACACGAAGAAGATAGCA
CACCCCGTTCGTAGCATTTTACGTTTCAAAAACATTTGTCACCGGGTGTG
TTTTGGTATGGGTGCGTGCTTTCTCATGGAGCCTCGTAGCGGGACCCTGA
CGTACTATCGGGTTCGGGTATCATTTGGACTAGGAGCACCCGTGTACTTT
CTTATGGGGGTGTGCTGTCTTGTGTCGCACACGGTACGCAGG
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