mRNA_P-fluviatile_contig1.303.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.303.1
Unique NamemRNA_P-fluviatile_contig1.303.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig1.303.1 vs. uniprot
Match: A0A6H5L3F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3F4_9PHAE)

HSP 1 Score: 435 bits (1119), Expect = 2.660e-139
Identity = 221/271 (81.55%), Postives = 242/271 (89.30%), Query Frame = 3 
Query: 1773 TDELTQAARDRATALVAAYVPTPATEGDLRCIEERQLRHKAGSSSRSVGVPPSPCRHGFPQAFAFDPCGYKVSSGLFRLSCPLLVQAIDQLEDEGGIEDVNARLANDESLREDFMAVNLAHGQLRRRLVTPDKMRMVEEAIGREGADHFLDSGLTGVTPGKVRDAKCLHAHVADALMRGRDANAIGRSTLDLLEARGVPTAGGDRCSEQCNFRVEETADSWRYTPQKNKQKLQMRKVRRKRMKSPETKMELGKEK--NVLLNAEGAVCTPL 2579
            TDELTQ ARDRATALV AYVPTPATEGDLRCIEERQLRHKAG+SSRS+GV P+PCRHGFPQAFAFDPCG+KVSSGLFRLSCPLLVQAID LEDEGGIEDVNARLA++E LREDFMAVNLAHG LRRRLVTP+K+ MVEE IG+EGA+ FLDSG+TGVT GKVRDAKCLHAHVADALMRGR ANAIGR+TL+LLEARGV T GGDRCSEQCN+RVEETADSWRYTPQKNKQKLQMRKVRRK MK+  T  E  +E   + +++A+     PL
Sbjct:  110 TDELTQTARDRATALVEAYVPTPATEGDLRCIEERQLRHKAGASSRSMGVSPNPCRHGFPQAFAFDPCGHKVSSGLFRLSCPLLVQAIDLLEDEGGIEDVNARLASEEGLREDFMAVNLAHGMLRRRLVTPEKLGMVEETIGKEGAERFLDSGITGVTTGKVRDAKCLHAHVADALMRGRSANAIGRATLELLEARGVRTDGGDRCSEQCNYRVEETADSWRYTPQKNKQKLQMRKVRRKDMKACITNKEREQETKDDAVVDADSGSGLPL 380
[Close]
BLAST of mRNA_P-fluviatile_contig1.303.1 vs. uniprot
Match: D8LLL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLL9_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 1.620e-110
Identity = 179/224 (79.91%), Postives = 197/224 (87.95%), Query Frame = 3 
Query: 1914 VGVPPSPCRHGFPQAFAFDPCGYKVSSGLFRLSCPLLVQAIDQLEDEGGIEDVNARLANDESLREDFMAVNLAHGQLRRRLVTPDKMRMVEEAIGREGADHFLDSGLTGVTPGKVRDAKCLHAHVADALMRGRDANAIGRSTLDLLEARGVPTAGGDRCSEQCNFRVEETADSWRYTPQKNKQKLQMRKVRRKRMKSPETKMELGKEK--NVLLNAEGAVCTPL 2579
            +GV P+PCRHGFPQAFAFDPCG+KVSSGLFRLSCPLLVQAID LEDEGGIEDVNARLA++E LREDFMAVNLAHG LRRRLVTPDKM +VEE IG+EGA  FLDSG+TGVTPGKVRDAKCLHAHVADALMRGR ANAIGR+TL+LLEARGV T GGDRCSEQCN+ VEETADSWRYTPQKNKQKLQMRKVRRK MK+  TK E  +E   + +++ +G    PL
Sbjct:    1 MGVSPNPCRHGFPQAFAFDPCGHKVSSGLFRLSCPLLVQAIDLLEDEGGIEDVNARLASEEGLREDFMAVNLAHGMLRRRLVTPDKMGLVEETIGKEGAGRFLDSGITGVTPGKVRDAKCLHAHVADALMRGRSANAIGRATLELLEARGVRTDGGDRCSEQCNYLVEETADSWRYTPQKNKQKLQMRKVRRKDMKACITKKERDRETKDDAVVDVDGGSGLPL 224
[Close]
BLAST of mRNA_P-fluviatile_contig1.303.1 vs. uniprot
Match: A0A6S9FG26_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9FG26_9STRA)

HSP 1 Score: 174 bits (442), Expect = 4.340e-45
Identity = 96/226 (42.48%), Postives = 137/226 (60.62%), Query Frame = 3 
Query: 1833 PTPATEGDLRCIEERQLRHKAGSSSRSVGVPPSPCRHGFPQAFAFDPCGYKVSSGLFRLSCPLLVQAIDQLEDEGGIEDVNARLANDESLREDFMAVNLAHGQLRRRLVT--PDKMRMVEEAIGREGADHFLDSGLTGVTPGK-VRDAKCLHAHVADALMRGRDANAIGRSTLDLLEAR-GVPTAGGDRCSEQCNFRVEETADSWRYTPQKNKQKLQMRKVRRKRM 2498
            PTP    D+ CIE RQL H  G++  SVG     C++GFPQAF F P  +KVSSGLFRLSCPLLV+A+D+ E EGG+ +++    +   + +DF   N    ++RR +V   P  M  V++ +G++ A+ FL SG+ G+ P   + D KCLHAH AD L R    N IG+  L  LE + G+   G D+C +QC+    +   +W Y P+KN+QKL+  + RRK +
Sbjct:   65 PTPE---DIDCIENRQLEH--GANIFSVG---QRCKYGFPQAFGFHPVEHKVSSGLFRLSCPLLVRAVDEWEAEGGVREMSDAARSSAEITDDFRETNQRISKIRRSIVESFPGGMEKVQQRLGKDNAERFLSSGIAGLGPNAGLSDVKCLHAHAADHLCRKDGGNIIGKEVLQRLEEKQGINVCGNDKCWQQCDVNHTQGPSNWHYLPRKNRQKLKATRRRRKEL 282
[Close]
BLAST of mRNA_P-fluviatile_contig1.303.1 vs. uniprot
Match: A0A8J2S7V2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S7V2_9STRA)

HSP 1 Score: 167 bits (424), Expect = 6.940e-43
Identity = 93/216 (43.06%), Postives = 131/216 (60.65%), Query Frame = 3 
Query: 1854 DLRCIEERQLRHKAGSSSRSVGVPP-SPCRHGFPQAFAFDPCGYKVSSGLFRLSCPLLVQAIDQLEDEGGIEDVNARLANDESLREDFMAVNLAHGQLRRRLVTPDKMRMVEEAIGREGADHFLDSGLTGVTPGKVRDAKCLHAHVADALMRGRDANAIGRSTLDLLEARGVPTAGGDRCSEQCNFRVEETADSWRYTPQKNKQKLQMRKVRRKRM 2498
            D   +E+RQL H A      VGVP  S CRHG+PQA   DP  +K  +G+ RL+CP L +A+D  E EG +  ++A L  +++ R+    VN  H   R+ +V  + +   E  +G +     LDSG+TG+TP K+ D KCLHA +AD L+  RD NA+G+  L+ LEARGV   G ++C EQC+  V    D WRYTP+KNKQKL+  + R K++
Sbjct:   38 DADVVEQRQLGHPANM----VGVPAVSLCRHGYPQAVLQDPGAHKFGAGMLRLTCPHLCEAVDAWEAEGAVRALSAELLAEDANRDALRKVNERHAVTRKSMVQGEALARAEARLGADTVRRVLDSGITGLTPSKLDDVKCLHAQLADELL-SRD-NAVGKKVLEGLEARGVDPTGSEKCGEQCSGCV----DGWRYTPRKNKQKLRATRARHKKL 243
[Close]
BLAST of mRNA_P-fluviatile_contig1.303.1 vs. uniprot
Match: A0A7S2PD55_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PD55_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.790e-41
Identity = 103/257 (40.08%), Postives = 141/257 (54.86%), Query Frame = 3 
Query: 1761 HLNRTDELTQAARDRATALVAAYVPTPATEGDLRCIEERQLRHKAGSSSRSVGVPPSPCRHGFPQAFAFDPC-GYKVSSGLFRLSCPLLVQAIDQLEDEGGIEDVNARLANDES--LREDFMAVNLAHGQLRRRLVTPDKMRMVEEAIGREGADHFLDSGLTGVTPGKVRDAKCLHAHVADALMRGR---------DANAIGRSTLDLLE-ARGVPTAGGDRCSEQCNFRVEETADSWRYTPQKNKQKLQMRKVRRK 2492
            H +   +    A +R TA +A       TE DL+ I+ERQ+ HK   S   V    SPCRHGFPQAF F P  G K+ SGLFRLSCPLLVQ ID+ E + G+ ++   L ND +   R+ +   N    Q+R  LV  D  ++V   +G   A  F++SG+ G+   +  + KC+HAHVAD L R           + N IG   L++L+  RGV T G D C +QC+ R E+    W Y P+KN+Q L+  + RRK
Sbjct:   76 HNSEETDKINIATERTTATIANQTFFLPTEQDLQTIQERQVCHKLEPSQ--VTCVSSPCRHGFPQAFGFHPTKGPKLVSGLFRLSCPLLVQQIDEWEGQSGVREMTDWLRNDVNGDKRKGYERANEMQKQIRSELVAEDYDKLVSR-MGEYNAAKFVESGIAGIPSSQTYNVKCIHAHVADHLCRSSQSNNTNTSTEGNIIGEHALNILQNQRGVSTLGNDVCWQQCSLRHEQLPSDWNYVPKKNRQGLRSTRQRRK 329
[Close]
BLAST of mRNA_P-fluviatile_contig1.303.1 vs. uniprot
Match: A0A7S2HF12_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2HF12_9STRA)

HSP 1 Score: 162 bits (411), Expect = 2.640e-41
Identity = 91/222 (40.99%), Postives = 126/222 (56.76%), Query Frame = 3 
Query: 1845 TEGDLRCIEERQLRHKAGSSSRSVGVPPSPCRHGFPQAFAFDPCGYKVSSGLFRLSCPLLVQAIDQLEDEGGIEDVNARLANDESLREDFMAVNLAHGQLRRRLVT--PDKMRMVEEAIGREGADHFLDSGLTGV-TPGKVRDAKCLHAHVADALMRGRDANAIGRSTLD-LLEARGVPTAGGDRCSEQCNFRVEETADSWRYTPQKNKQKLQMRKVRRKRM 2498
            T  D+ CIE RQL H A     ++      C++GFPQAF F P  +KVSSGLFRLSCPLLV+AID+ E EGG+ +++    +   +  DF   N    Q+RR ++   P  M  V+  +G + ++ +L SG+ G+     + D KCLHAHVAD L R    N IG+  L  L + RGV   G + C +QC+         W Y P+KN+QKL+  + RRK M
Sbjct:   36 TLSDINCIENRQLEHSA-----NIFFVGKRCKYGFPQAFGFHPVEHKVSSGLFRLSCPLLVKAIDEWEGEGGVREMSDAARSSAEITADFEETNRRIAQIRRSIIDSFPGGMEKVQMHLGEDNSERYLSSGIAGLGLNAGLADVKCLHAHVADHLCRKDGGNRIGQEVLRRLADKRGVNVCGNENCWQQCDVNHNRGPSDWHYLPRKNRQKLKATRRRRKDM 252
[Close]
BLAST of mRNA_P-fluviatile_contig1.303.1 vs. uniprot
Match: K8YZM2_NANGC (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YZM2_NANGC)

HSP 1 Score: 165 bits (417), Expect = 2.330e-40
Identity = 108/307 (35.18%), Postives = 142/307 (46.25%), Query Frame = 3 
Query: 1746 SNAHLHLNRTDELTQAARDRATALVAAYVPTPATEGDLRCIEERQLRHKAGSSSRSVGVPPSPCRHGFPQAFAFDPCGYKVSSGLFRLSCPLLVQAIDQLEDE----------------------GGIEDVNARLANDESLREDFMAVNLAHGQLRRRLVTPDKMRMVEEAIGREGADHFLDSGLTGVTPGKVRDAKCLHAHVAD------------------------------------ALMRGRDANAIGRSTLDLLEA-RGVPTAGGDRCSEQCNFRVEETADSWRYTPQKNKQKLQMRKVRR 2489
            S A   L+   +   AA D     +  + PTPA++ D+ CIE+RQL H         G P   C HGFPQAF F P     +SGLFRLSCPLLV+A+D+ E +                      GG+++ N +L    +++ +F  VN  H  +RR LV P+ +R   E +G  G +  L SG+ GV+P K  D KCLHAH+AD                                    AL+ G D NAIG    + L   R +   G   C +QCN   E T  SW Y P KNKQKL+ R  RR
Sbjct:   81 SAAFTPLSTGSKAATAAIDPDHFDIPPFRPTPASDEDIACIEQRQLGHPI----TCAGGPRQRCAHGFPQAFIFHPTKTTFNSGLFRLSCPLLVKAVDEFEAQVALCFRVGSPIHPFPSLPSLPPGGLQEFNRKLEKSPAMQREFRRVNARHSAIRRGLVDPEGLRSYVEKLGEAGVEQILASGIAGVSPTKTGDLKCLHAHLADYLCTRTGGGEGKGWGRGGAMLRAKEDVALAYRDISVALLSGYD-NAIGEEVYEHLRTNRQIEVEGNAECWQQCNLSFERTPSSWWYVPVKNKQKLRSRYHRR 382
[Close]
BLAST of mRNA_P-fluviatile_contig1.303.1 vs. uniprot
Match: A0A7S0BWE2_9STRA (Hypothetical protein (Fragment) n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BWE2_9STRA)

HSP 1 Score: 131 bits (329), Expect = 8.060e-31
Identity = 74/183 (40.44%), Postives = 104/183 (56.83%), Query Frame = 3 
Query: 1845 TEGDLRCIEERQLRHKAGSSSRSVGVPPSPCRHGFPQAFAFDPCGYKVSSGLFRLSCPLLVQAIDQLEDEGGIEDVNARLANDESLREDFMAVNLAHGQLRRRLVT--PDKMRMVEEAIGREGADHFLDSGLTGVTPGKVRDAKCLHAHVADALMRGRD--ANAIGRSTLDLLEA-RGVPTAG 2378
            T+ D+ CI + Q+ H     + S+G     C HG+PQA+   PC YK+S GLFRL+CP+LVQAID+ E  GG+ ++N  +   E L   F AVN    ++R+ ++   P  M  +   +G   A+  L SG+ G+ P    D KCLHAHVAD L R  D  ++ IG+  L LL+  RGV   G
Sbjct:   35 TKSDIDCIHQHQIHHPI--QAFSIG---QKCTHGYPQAYGNHPCEYKISGGLFRLTCPMLVQAIDEWEARGGVRELNDLVMGSEDLTRSFHAVNQRTVRVRKAVIDAHPGGMEKITSRLGDFNAERLLASGIAGLGPNAGVDVKCLHAHVADQLCRPADDDSDTIGKEILRLLKVERGVAVDG 212
[Close]
BLAST of mRNA_P-fluviatile_contig1.303.1 vs. uniprot
Match: K0SY20_THAOC (PseudoU_synth_2 domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SY20_THAOC)

HSP 1 Score: 137 bits (344), Expect = 3.720e-29
Identity = 89/231 (38.53%), Postives = 123/231 (53.25%), Query Frame = 3 
Query: 1854 DLRCIEERQLRHKAGSSSRSVGVPPSPCRHGFPQAFAFDPC-GYKVSSGLFRLSCPLLVQAIDQLEDEGGIEDVNARLANDE-----SLRED-FMAVNLAHGQLRRRLVTPDKMRMVEEAIGREGADHFLDSGLTGVTPGKVRDAKCLHAHVADALMR-GRD-----------ANAIGRSTLDLLEARGVPTAGGDRCSEQCNFRVEETADSWRYTPQKNKQKLQMRKVRR 2489
            DL  IE+ Q+ H+     +   V  SPC HG+PQ+F F P  G K  SGLFRLSCPLLV+AIDQ E EGG+  +   L +D+     S ++D F   N    ++R+ L   D +  + + +G   ++ FLDSG+ G+   +  + KC+HAHVAD L R  RD            N IG   L +L  RG    G + C +QCN   +     W Y P+KN+QKL+    RR
Sbjct:  663 DLDVIEQ-QVFHRV-DDDQVFCVSSSPCLHGYPQSFGFHPTKGPKPVSGLFRLSCPLLVEAIDQWEGEGGVRQMTDWLRSDDRFHNASRKQDGFETANRIQKKVRKELARGD-LSYLSKRLGEFNSERFLDSGIAGIPSSQTFNVKCIHAHVADHLCRRSRDLDSADIENADRGNIIGEHALRILGDRGTEICGNEVCWQQCNCNRKRVDSDWSYRPKKNRQKLKTTSERR 890
[Close]
BLAST of mRNA_P-fluviatile_contig1.303.1 vs. uniprot
Match: A0A7S0L8X3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L8X3_9EUKA)

HSP 1 Score: 126 bits (316), Expect = 3.620e-28
Identity = 84/216 (38.89%), Postives = 112/216 (51.85%), Query Frame = 3 
Query: 1869 EERQLRHKAGSSSRSVGVPPSP-CRHGFPQAFAFDPCGYK-----VSSGLFRLSCPLLVQAIDQLEDEGGIEDVNARLANDES--LREDFMAVNLAHGQLRRRLVTPDKMRMVEEAIGREGADHFL-----DSGLTGVTPGKVRDAKCLHAHVADALMRGRDANAIGRSTLDLLEARGVPTAGGDRCSEQCNFRVEETADSWRYTPQKNKQKLQMR 2477
            +E  + H+    + S      P CRHG+PQAF +DP   +     + +GLFRLSCPLLV+AID+ E EG +  +NA +  D+S  LR      N  H   R+  V   ++  +         D  L     DSG+ G + GK  + KCLHA VAD L R R  NA+G+  L+ L+ARGV   G + C  QC+  V      W YTP KNK KL  R
Sbjct:   75 DELHVLHRQTGQNLSNAYALGPRCRHGYPQAFMWDPMPVERKAVPIDAGLFRLSCPLLVKAIDEWESEGAVATLNAEVEADQSGALRSQLTQANAGHAAARKE-VLGSRLHALLSTASTSPQDLRLARMVADSGIAGQSRGKP-EVKCLHAQVADHLCRSRS-NAVGQRVLEGLQARGVLVDGDETCRGQCDPAVPPKEAPWWYTPTKNKWKLHKR 287
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.303.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3F4_9PHAE2.660e-13981.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLL9_ECTSI1.620e-11079.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6S9FG26_9STRA4.340e-4542.48Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A8J2S7V2_9STRA6.940e-4343.06Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2PD55_9STRA1.790e-4140.08Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2HF12_9STRA2.640e-4140.99Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K8YZM2_NANGC2.330e-4035.18Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S0BWE2_9STRA8.060e-3140.44Hypothetical protein (Fragment) n=2 Tax=Proboscia ... [more]
K0SY20_THAOC3.720e-2938.53PseudoU_synth_2 domain-containing protein (Fragmen... [more]
A0A7S0L8X3_9EUKA3.620e-2838.89Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:3758335..3763521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.1
Seed ortholog evalue7.7e-96
Seed eggNOG ortholog2880.D8LLL9
EggNOG free text desc.Protein of unknown function (DUF501)
EggNOG OGs2C2QW@1,2SDB4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF501
Ec32 orthologEc-04_005280.1
Exons5
Model size3102
Cds size846
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.4321134-UTR-P-fluviatile_contig1:3758334..37588541622815318.4321134-UTR-P-fluviatile_contig1:3758334..3758854Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3758335..3758854 -
1693561488.258292-UTR-P-fluviatile_contig1:3758334..37588541693561488.258292-UTR-P-fluviatile_contig1:3758334..3758854Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3758335..3758854 -
1622815318.5059395-UTR-P-fluviatile_contig1:3761785..37635211622815318.5059395-UTR-P-fluviatile_contig1:3761785..3763521Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3761786..3763521 -
1693561488.4740698-UTR-P-fluviatile_contig1:3761785..37635211693561488.4740698-UTR-P-fluviatile_contig1:3761785..3763521Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 3761786..3763521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.441864-CDS-P-fluviatile_contig1:3758854..37589991622815318.441864-CDS-P-fluviatile_contig1:3758854..3758999Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3758855..3758999 -
1693561488.277239-CDS-P-fluviatile_contig1:3758854..37589991693561488.277239-CDS-P-fluviatile_contig1:3758854..3758999Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3758855..3758999 -
1622815318.4506931-CDS-P-fluviatile_contig1:3759551..37597331622815318.4506931-CDS-P-fluviatile_contig1:3759551..3759733Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3759552..3759733 -
1693561488.284717-CDS-P-fluviatile_contig1:3759551..37597331693561488.284717-CDS-P-fluviatile_contig1:3759551..3759733Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3759552..3759733 -
1622815318.462947-CDS-P-fluviatile_contig1:3760194..37603411622815318.462947-CDS-P-fluviatile_contig1:3760194..3760341Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3760195..3760341 -
1693561488.2927942-CDS-P-fluviatile_contig1:3760194..37603411693561488.2927942-CDS-P-fluviatile_contig1:3760194..3760341Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3760195..3760341 -
1622815318.4738796-CDS-P-fluviatile_contig1:3760527..37606501622815318.4738796-CDS-P-fluviatile_contig1:3760527..3760650Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3760528..3760650 -
1693561488.4524894-CDS-P-fluviatile_contig1:3760527..37606501693561488.4524894-CDS-P-fluviatile_contig1:3760527..3760650Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3760528..3760650 -
1622815318.4861052-CDS-P-fluviatile_contig1:3761536..37617851622815318.4861052-CDS-P-fluviatile_contig1:3761536..3761785Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3761537..3761785 -
1693561488.464433-CDS-P-fluviatile_contig1:3761536..37617851693561488.464433-CDS-P-fluviatile_contig1:3761536..3761785Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 3761537..3761785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.303.1prot_P-fluviatile_contig1.303.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 3758855..3761785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.303.1

>prot_P-fluviatile_contig1.303.1 ID=prot_P-fluviatile_contig1.303.1|Name=mRNA_P-fluviatile_contig1.303.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=282bp
MGYSNAHLHLNRTDELTQAARDRATALVAAYVPTPATEGDLRCIEERQLR
HKAGSSSRSVGVPPSPCRHGFPQAFAFDPCGYKVSSGLFRLSCPLLVQAI
DQLEDEGGIEDVNARLANDESLREDFMAVNLAHGQLRRRLVTPDKMRMVE
EAIGREGADHFLDSGLTGVTPGKVRDAKCLHAHVADALMRGRDANAIGRS
TLDLLEARGVPTAGGDRCSEQCNFRVEETADSWRYTPQKNKQKLQMRKVR
RKRMKSPETKMELGKEKNVLLNAEGAVCTPL*
back to top

mRNA from alignment at P-fluviatile_contig1:3758335..3763521-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.303.1 ID=mRNA_P-fluviatile_contig1.303.1|Name=mRNA_P-fluviatile_contig1.303.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=5187bp|location=Sequence derived from alignment at P-fluviatile_contig1:3758335..3763521- (Porterinema fluviatile SAG_2381)
GAGAATTATGACGGCAGTGTTGGTGATGACATCGCCCGCTCTTCTTCGGT
CAGCACCAAGAGGCAGAACTCCAGGCCCGTCGGGTAGGTCAGGGCAACGG
TAGCAAGCGCTGCAGCAGTAGTGGTTTTACGAGGACGCGACATGCCGCGT
TTCACCGAAAGAGCCGCATTCCCTTGAAAAAGCACCAAGTCAGAGATGTT
GGCCAAACATGTACGTGCGACTGATTGCCTGAGGGCGCACCGAGCCGATC
ATGTTGCATGTCGGATGCGCTCACCCTCACCAGTATCCCACCCCAACTCA
GAAGAGGTCGAAGCGCTTACGCAATCACATCGGACGTCGATGCTTTCACT
CGGTCACACTATGGAAATGGAGCTGCGAAGGAATTTTCTTTTGTTACACC
ATTTCTTGTGGTTAAACAATATTTGTTCGATCCGATCTTGCCGTTCTGAG
CGTTTAGGGCAATCTTGACATGTAATGAGCTCAGAATCAGACGTTGACTT
CTTGAGAATTGATGGAGCATTTATCCAGAGGCCAGCGAAGCCTCTACCTA
ATCTGGGCGACATGATGTTTGAATTTTTACGCCTGGGCAAGATTTGGCAA
CATTAGTTGAGATTGACCGCAAAAACGGTGTCTGGACCATTTTTGGACCA
AGATTCGCGTGGCACACCATTTTTTTGTCAAATGCGATCCAATCTCGTCA
AACCTTGCCAGGATGCACAAGTTTCAAATCCCACTCGTCAGATTTGGCAG
AAGCTTCACCGACCTCTGGATGCGAGCTCGAATTCTTCCTGAGCTCATTA
CATGTCAAACTTGCCCTAAACGCCGAGATAGACGAGATCGGATCGAATCA
AAATTGGTTCTCCACAGGAACAGGCTTAACACTCAAGACGAACCCACAGC
AACAGTTCGTCTGCGTTTGGGTCATGTTTTTGAAGCTTATGTGTCGTTTC
TGATGTCAGACTTGCCGATATCGCATTCTTTAGGTTATGCGCTTCTTTGA
GCGTTCAAGGCTGAATAACTCGTGCCCCGAGGTTGGTGGAGCGACCCCCG
TCATGACGTGAACCCTCTACATCACTGATCCCTTGTAAAGGAACGTTCCA
CCACGCCCATGTGGCGAAATTTTGGTGCGGTGCTCAGGTGGCCCGGTGTT
CCGTGCGTTTGAGTGTTTGAGTATTGTTGTGTACAGTAGGGGACGCAGTA
CAAGGCGGTCTGAATAAGGCGGCGGTCTGATACATTGCGGATGAAATCGC
TGGCATGAAAGCTCGCTTACAATCTCAAACCTGCTATGTTTCTCCCAATC
GATAAGGCAGCTGCCCGTATGGTCGTTTCCAGCTGCCCCACGGCCGCCTC
ATATCGCTCCCCCCAAATGTATTGTACTCAAGCCCGTCAATCTAATCGAA
GGCAGCAAGCTGGAGAGCCGGGTATGACAGCCTCAACGACATCAACAAAT
ACACTTCGGGAATGGAGCCGAAAACTTTCGACCTGGCCTGTTCACCTGCT
TTGCATTCCTCTTGTCGGTGCTTTTGTACGTGATACGAACAATTGCTTGA
CGTCTCTCCAAACCTGCCCTGCCCCTGGATAGCATTCTTCCAAGGAAAGC
CAACGCCCGTAAGGCCCAACCCTAACCTTACACATTCCCAAACCCAACCC
CAATCCCAACCACAACAAAAACCACAACCGCAACCCGAACCCCAACCTAA
CCTAGATTAGACTATACCACTTATCTCTGCATAGATATGGGGTATTCCAA
CGCACATTTGCACTTGAACAGGACCGATGAGCTTACACAAGCAGCCAGAG
ACAGAGCGACCGCTCTTGTGGCGGCGTACGTTCCCACTCCAGCCACCGAG
GGTGACTTGCGCTGCATCGAGGAGCGACAGTTGCGGCACAAGGCTGGGTC
GTCGTCTAGATCGGTGGGCGTGCCCCCTAGCCCGTGCCGACACGGGTTCC
CGCAGGCTTTCGCGTTCGACCCCTGCGGGTACAAGGTACGTGGTCGGGGT
TGAAAAGCGTGGCTGGTACGCGTGCTGACTCCTTCGTATTGGAATGAGAA
ATTTCGATATTGTTGTTTCTCAAACATTTTGCCCATGGTCCCAGGCCAGG
CACACGACACGTTCCACGGCGTGAAGGAAGCGCACAGAGATAGGCCCAAC
GTATATGCAACATAATTGAACCTCCAAGAACCAAGCCAACTCATTGACTT
CTGTTCTGTCGGGACAACGTGCGTTTTTATTTTCCATTGAAAACGTGTCT
CCAGGCTCTTCCAGGCCCACCAACCCATTTTTCAGTTAAATTGCTCTCCT
TCTGACCCCTGCATGCACCGCTCGGTTTTCTTGTGGCATACCATATGCTT
CGGCTGTTGTGTTGTCAAACGCGTCTGTTATGATACCGCGAACAAGTGTC
ACCTTATGATCACCGCTGTTTTGACGGGTCGTAGCTTTTTGTGGGCGGCC
GGCAATTCCAGGCGTAGCGATTCGAATTTCCGACGGAAATCTGCGCAAGA
GCCGCAATGCCTGCTCAGAGCAAATGCGTGTGTATTGTTTTGTTCACAAG
ATGTCGTCGGTCGGCCCTGTATTGCCTTATCACCCTCATGCGACGATTGG
AGAAAACACAAGGTAGCCGTGGTTTCGACCCAAAGTCAGTTTTGTGTCTT
CGAGGTTCCTCCGCTGATGTTTGTCCGGCTGATTTCCAGTCCGCCACGGG
GGCTGGTGTCGGCGGTAATCTTTTTCCTTGCCCACACAGACTACCCTAGA
GACGCCCGTTGCTCGAGTCGCCTTGCAGGTTTCGGCATGTGCATGGGTCT
CCTTCACCCTGACAAATCGTCAATGCTATGTCTGCGGTCATGCTGCCGAT
GCTCCGTGGATTGATTTTCAGGTGTCCTCGGGGCTTTTCCGGCTATCTTG
CCCGCTGCTGGTGCAAGCGATCGACCAGCTGGAAGACGAGGGAGGGATAG
AGGATGTGAACGCCCGGCTGGCCAACGACGAGAGCCTTCGCGAGGTTCGT
GATGACCGCATTCTCTACCCGGCTGTTCGCGTGGCCAAGACCACGCAAGG
CGCCCTCCTGTTTTACCTGTCGTGACTTTGTGCATCTCTCAGACCGTCGT
CTGTTGTCGCCGCCGTCCCACGTGTCCCATCGACTTGCACGGCGGGGTTT
GGGGGAATACGACGTGAAACATGGTTGCAGGATTTCATGGCGGTCAACTT
GGCGCATGGACAGCTGCGGCGGCGTTTGGTGACGCCGGACAAGATGCGTA
TGGTTGAGGAGGCTATCGGGAGGGAAGGAGCTGACCACTTCCTCGACAGC
GGACTAACCGGTGTCACCCCGGGAAAGGTTCGTCTTCAATGCACTCTTGT
ACTCATTGTGGCCTGCGGAAGTTCGGCCAATCCACGAGGGTGCCTCAACG
AATCAAGCTGAGACCTGCCATTCCGGGCAGGTCCTTGATGCTGTTGCCTA
ACACCGCGCAGGTGCTAGACCAGGGCACATCACCCGTAAGGAAGGAGTGG
GTTCGTTGTGCTGAAGCGGTGATATCGGTTATCTTCGTAGAGGTAGTTCG
ACAACACCTCGCAACCAGCTGATGCCGGGCACATACCTTCCCGTGTGTCG
CGGGCACATTTATTTGACGCGTTTCAGCTGCCGCCTTTTCAGCAGCATCG
TGATGATTACTTCACCCCTGGGCACATAGAATAGGAAACAATTTGTACCA
GACATGTTTGTTCGGTCGTTTTTGGGACTGCTTGATGTCAATTTTACGCC
TTGGGCTTGTACCCTCACCCACCGACGTGCGCACCTAGGTCCGTGATGCT
AAGTGCCTCCACGCGCACGTAGCAGACGCTCTGATGCGAGGGAGGGACGC
AAACGCCATCGGCCGCTCGACGCTGGACCTACTCGAGGCCCGAGGGGTGC
CGACAGCTGGAGGGGACCGGTGCAGCGAACAGTGCAACTTCCGTGTGGAA
GAGACTGCGGACAGCTGGCGGTGAGAGGACTGCTTTGCGTCGGATTAGGT
CAGATCGGTTCGTTCAGTTCGGTGAGCCAGAGGGTCAACCATTGATGGTG
GTTGTCGTGGTGGTTGTGATGGTGTTGCGACGGCGGTGGCGGTAGCGGCG
GCGGCCGCTGTTGTCTTACTTCCCGTCCTTTCTGTCCAACACATCTATTG
GCAAGTGCACCCTCGACGTCAACGAAGGGATTGAGAAGGGCTGACGGAGC
TCCCATTTGTCCATCACAAATATCCTTTCAACACGCTCATTGGACCCGTT
ACCTCAAGACCTAAATGCGGACGAGTGCGCGATCATCGCGCACGTCGTCT
CAACCAATGTAAAACCCTGCTTGATCTGTAGCCCCAACGACGAAACATAT
AAACGAAACATATAAACCGCCCAGAAACTTGAAACTGCAACAGCAAACAC
GGCCCTGCCTCCTCGCTCATCTCTTACCGTCAGTCCACGTCACCCCACTT
GCACCTGCAACTCGTTGGTGGCATGTTTCCATCCAACGGGTCACCCTTCG
CGCTGACAATCGCATTTCTTAGGTACACGCCGCAAAAAAACAAGCAGAAG
CTTCAGATGAGGAAGGTGCGGCGCAAGAGAATGAAATCTCCCGAGACAAA
AATGGAACTGGGCAAGGAGAAGAATGTACTTCTCAATGCCGAGGGCGCTG
TCTGCACTCCTCTGTAGAAGCAGGAGGAGCAGCCGCAGCGCAGTGGCAGC
AGCGCATCCAATCGAGACATTCGCCACGGTCACGCATTATACACGTGCAA
GTCGATGCCAAGGAGATGTGCGCTCCTTTAGGTTTGACGTCAGCACATTG
TACATTGCCAAGCAAGCAAAGGCTTTCATTTTCGGCAGACAGTCGGTTGC
AGCAGCATATACGACGTTAGCGGTATCGCTGAATTGAGTGTTAAGAAACA
TGGTTGGAACCATTCGTAAATACAGTCCTGACTTAGACTCATCCTTTCTT
CTATCGCCTTCGCAGACTTTCCAAGGTCAAGCCATTTTACACACCTCATG
GAGTGGATTCCGCCTGTCGCGGATCGACGTCGCACCTGACGCCTTTGTAG
GCGCCCCCGTCGATGCTTCTGCACGACTACAGAGAAACAAGTTCGCGATG
GTTTCCCGTGTTCTGCATGCGAAACTCATCGCTGAGTCGAGGATAGCGCC
CAGGACATCAGTTCACCGAACCGCAATTAATCCGACC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:3758335..3763521-

>mRNA_P-fluviatile_contig1.303.1 ID=mRNA_P-fluviatile_contig1.303.1|Name=mRNA_P-fluviatile_contig1.303.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1692bp|location=Sequence derived from alignment at P-fluviatile_contig1:3758335..3763521- (Porterinema fluviatile SAG_2381)
ATGGGGTATTCCAACGCACATTTGCACTTGAACAGGACCGATGAGCTTAC
ACAAGCAGCCAGAGACAGAGCGACCGCTCTTGTGGCGGCGTACGTTCCCA
CTCCAGCCACCGAGGGTGACTTGCGCTGCATCGAGGAGCGACAGTTGCGG
CACAAGGCTGGGTCGTCGTCTAGATCGGTGGGCGTGCCCCCTAGCCCGTG
CCGACACGGGTTCCCGCAGGCTTTCGCGTTCGACCCCTGCGGGTACAAGA
TGGGGTATTCCAACGCACATTTGCACTTGAACAGGACCGATGAGCTTACA
CAAGCAGCCAGAGACAGAGCGACCGCTCTTGTGGCGGCGTACGTTCCCAC
TCCAGCCACCGAGGGTGACTTGCGCTGCATCGAGGAGCGACAGTTGCGGC
ACAAGGCTGGGTCGTCGTCTAGATCGGTGGGCGTGCCCCCTAGCCCGTGC
CGACACGGGTTCCCGCAGGCTTTCGCGTTCGACCCCTGCGGGTACAAGGT
GTCCTCGGGGCTTTTCCGGCTATCTTGCCCGCTGCTGGTGCAAGCGATCG
ACCAGCTGGAAGACGAGGGAGGGATAGAGGATGTGAACGCCCGGCTGGCC
AACGACGAGAGCCTTCGCGAGGTGTCCTCGGGGCTTTTCCGGCTATCTTG
CCCGCTGCTGGTGCAAGCGATCGACCAGCTGGAAGACGAGGGAGGGATAG
AGGATGTGAACGCCCGGCTGGCCAACGACGAGAGCCTTCGCGAGGATTTC
ATGGCGGTCAACTTGGCGCATGGACAGCTGCGGCGGCGTTTGGTGACGCC
GGACAAGATGCGTATGGTTGAGGAGGCTATCGGGAGGGAAGGAGCTGACC
ACTTCCTCGACAGCGGACTAACCGGTGTCACCCCGGGAAAGGATTTCATG
GCGGTCAACTTGGCGCATGGACAGCTGCGGCGGCGTTTGGTGACGCCGGA
CAAGATGCGTATGGTTGAGGAGGCTATCGGGAGGGAAGGAGCTGACCACT
TCCTCGACAGCGGACTAACCGGTGTCACCCCGGGAAAGGTCCGTGATGCT
AAGTGCCTCCACGCGCACGTAGCAGACGCTCTGATGCGAGGGAGGGACGC
AAACGCCATCGGCCGCTCGACGCTGGACCTACTCGAGGCCCGAGGGGTGC
CGACAGCTGGAGGGGACCGGTGCAGCGAACAGTGCAACTTCCGTGTGGAA
GAGACTGCGGACAGCTGGCGGTCCGTGATGCTAAGTGCCTCCACGCGCAC
GTAGCAGACGCTCTGATGCGAGGGAGGGACGCAAACGCCATCGGCCGCTC
GACGCTGGACCTACTCGAGGCCCGAGGGGTGCCGACAGCTGGAGGGGACC
GGTGCAGCGAACAGTGCAACTTCCGTGTGGAAGAGACTGCGGACAGCTGG
CGGTACACGCCGCAAAAAAACAAGCAGAAGCTTCAGATGAGGAAGGTGCG
GCGCAAGAGAATGAAATCTCCCGAGACAAAAATGGAACTGGGCAAGGAGA
AGAATGTACTTCTCAATGCCGAGGGCGCTGTCTGCACTCCTCTGTAGGTA
CACGCCGCAAAAAAACAAGCAGAAGCTTCAGATGAGGAAGGTGCGGCGCA
AGAGAATGAAATCTCCCGAGACAAAAATGGAACTGGGCAAGGAGAAGAAT
GTACTTCTCAATGCCGAGGGCGCTGTCTGCACTCCTCTGTAG
back to top