mRNA_P-fluviatile_contig19.3586.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig19.3586.1
Unique NamemRNA_P-fluviatile_contig19.3586.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig19.3586.1 vs. uniprot
Match: D8LSF5_ECTSI (Selenopotein M n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSF5_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 5.760e-50
Identity = 109/203 (53.69%), Postives = 127/203 (62.56%), Query Frame = 2
Query: 2327 MKLFPPAVGMLVLGAPSVVAQALRGLITSCSG*KLNKLPEAKKFISNIDHARGYEDVEVEYKAGKPPILTFFDKTSGDETESINLEKMSLDEMHEVLVSRGFVRRADVPGLAEVKEKEAAADATAEAARKERAEXXXXXXXXXXXXXXXXXXXEFEPKGDKHDDLGNAQA------AGLAAKRALDVEKLKARANEAGGDGEL 2917
            MKLF   +G L +      A A+RG I SCSG KLNKLPEAKKF+ N +HA  YED+EVE+KAGKPP+LT FDK SG+ETESINLEK ++DEMHE+LVSRGFVRRAD   LAEVK KEA AD  A   +KERAE                       + +   D G A+A      A +A KR  D  K KAR +EAGG GEL
Sbjct:    6 MKLFAFVIGALFVSRACAQAAAMRGHIVSCSGXKLNKLPEAKKFLKNPEHAASYEDIEVEFKAGKPPVLTLFDKASGEETESINLEKFTIDEMHELLVSRGFVRRADAADLAEVKAKEAIADEAAAKQKKERAEAAAKRRLE---------------RENNRPDKGAAKAHQAEGRAAMAEKRKFDAAKRKARESEAGGSGEL 193          
BLAST of mRNA_P-fluviatile_contig19.3586.1 vs. uniprot
Match: A0A6H5KUZ9_9PHAE (Sep15_SelM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ9_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 4.040e-28
Identity = 85/152 (55.92%), Postives = 98/152 (64.47%), Query Frame = 2
Query: 2480 RGYEDVEVEYKAGKPPILTFFDKTSGDETESINLEKMSLDEMHEVLVSRGFVRRADVPGLAEVKEKEAAADATAEAARKERAEXXXXXXXXXXXXXXXXXXXEFEPKGDKHDDLGNAQA------AGLAAKRALDVEKLKARANEAGGDGEL 2917
            RGY  + VE+KAGKPP+LT FDK SG+ETESINLEK ++DEMHE+LVSRGFVRRAD   LAEVK KEA AD  A   +KERAEXXXXXX               E + D+ D  G A+A      A +  KR  D  K KAR +EA G GEL
Sbjct:   23 RGYR-ITVEFKAGKPPVLTLFDKASGEETESINLEKFTIDEMHELLVSRGFVRRADAADLAEVKAKEAIADEAAAKQKKERAEXXXXXX--------------LERENDRPD-RGAAKAHQAEDRAAMGEKRKFDAVKRKARESEADGSGEL 158          
BLAST of mRNA_P-fluviatile_contig19.3586.1 vs. uniprot
Match: UPI000C780D3A (selenoprotein M-like n=1 Tax=Eurytemora affinis TaxID=88015 RepID=UPI000C780D3A)

HSP 1 Score: 58.9 bits (141), Expect = 1.290e-6
Identity = 31/81 (38.27%), Postives = 51/81 (62.96%), Query Frame = 2
Query: 2402 LITSCSG*KLNKLPEAKKFISNIDHARGYEDVEVEYKAGKPPILTFFDKTSGDETESINLEKMSLDEMHEVLVSRGFVRRA 2644
            ++ SCSG +LNKLPE K FI   D    YE    +   GK P   F+++ +G E E +N+EK S +E+++++VS+G  +++
Sbjct:   39 VVESCSGXRLNKLPEVKNFIYG-DLESKYERTVFKKVPGKSPEAIFYNQ-AGKELERLNIEKFSREELNQMMVSKGLPKKS 117          
BLAST of mRNA_P-fluviatile_contig19.3586.1 vs. uniprot
Match: UPI0010F8920E (selenoprotein M-like isoform X1 n=2 Tax=Osmia TaxID=124287 RepID=UPI0010F8920E)

HSP 1 Score: 55.5 bits (132), Expect = 1.690e-5
Identity = 28/80 (35.00%), Postives = 49/80 (61.25%), Query Frame = 2
Query: 2405 ITSCSG*KLNKLPEAKKFISNIDHARGYEDVEVEYKAGKPPILTFFDKTSGDETESINLEKMSLDEMHEVLVSRGFVRRA 2644
            + SCSG +LN+LP+ K+FI   +    Y +VE ++  G  P L  F++   +E E + L  ++ +E + +LVS+GF ++A
Sbjct:   32 VESCSGCRLNRLPDVKQFI--FEDVPNYNNVEFKHIQGAVPELLLFNEND-EEVERLPLSSLTREECNNLLVSKGFTKKA 108          
BLAST of mRNA_P-fluviatile_contig19.3586.1 vs. uniprot
Match: UPI001E1D50C5 (selenoprotein M-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D50C5)

HSP 1 Score: 56.2 bits (134), Expect = 1.810e-5
Identity = 30/84 (35.71%), Postives = 50/84 (59.52%), Query Frame = 2
Query: 2396 RGLITSCSG*KLNKLPEAKKFISNIDHARGYEDVEVEYKAGKPPILTFFDKTSGDETESINLEKMSLDEMHEVLVSRGFVRRAD 2647
            + +I SCSG +LN+LPE KKFI   +    + D   + K G PP+L   +K +    E I L++ S  E +++L+  GF+++A+
Sbjct:   28 KAVIESCSGXRLNRLPEVKKFI--YEDIPLFHDATFKPKGGAPPVLQLMNKDN-QILEEIELDRKSRQECNDLLLQLGFLKKAN 108          
BLAST of mRNA_P-fluviatile_contig19.3586.1 vs. uniprot
Match: A0A835CSK3_9HYME (Sep15_SelM domain-containing protein n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A835CSK3_9HYME)

HSP 1 Score: 54.7 bits (130), Expect = 3.150e-5
Identity = 28/78 (35.90%), Postives = 45/78 (57.69%), Query Frame = 2
Query: 2399 GLITSCSG*KLNKLPEAKKFISNIDHARGYEDVEVEYKAGKPPILTFFDKTSGDETESINLEKMSLDEMHEVLVSRGF 2632
            G++ SCSG  LN+LP+ KKFI        YE V+ ++  G  P L  ++    +E E + L +++ DE +E+L  +GF
Sbjct:   30 GVVESCSGCSLNRLPDVKKFI--FSDVPNYERVQFKHIQGAVPELVLYNNNE-EEVERLQLSRLTRDECNELLQQKGF 104          
BLAST of mRNA_P-fluviatile_contig19.3586.1 vs. uniprot
Match: UPI00142554F2 (selenoprotein M-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142554F2)

HSP 1 Score: 55.1 bits (131), Expect = 3.560e-5
Identity = 30/94 (31.91%), Postives = 53/94 (56.38%), Query Frame = 2
Query: 2375 SVVAQALRGLITSCSG*KLNKLPEAKKFISNIDHARGYEDVEVEYKAGKPPILTFFDKTSGDETESINLEKMSLDEMHEVLVSRGFVRRADVPG 2656
            ++ A  ++  + SC+G +LNKLPE K+FI N      + +   + K+G  P+L F D  +G   E I++  MS  E+  +++ +GF R+  + G
Sbjct:   17 TISADVMKAEVESCTGXRLNKLPEVKRFIHN--DLPYFHNAVFKPKSGASPVLFFLD-AAGGVVEKIDMAPMSQKELTALMLHKGFYRKKTLFG 107          
BLAST of mRNA_P-fluviatile_contig19.3586.1 vs. uniprot
Match: UPI001C9A3191 (selenoprotein M-like isoform X1 n=2 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9A3191)

HSP 1 Score: 54.7 bits (130), Expect = 4.020e-5
Identity = 27/81 (33.33%), Postives = 49/81 (60.49%), Query Frame = 2
Query: 2402 LITSCSG*KLNKLPEAKKFISNIDHARGYEDVEVEYKAGKPPILTFFDKTSGDETESINLEKMSLDEMHEVLVSRGFVRRA 2644
            ++ SCSG +LN LP+ K FI   +    Y  VE ++  G  P L  FD+ + +E E + L +++ +E + +L+++GF ++A
Sbjct:   41 IVESCSGCRLNWLPDVKNFI--FEDLPNYNKVEFKHIRGAEPELVLFDRHN-EEVERLPLSRLTREECNNLLITKGFTKKA 118          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig19.3586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LSF5_ECTSI5.760e-5053.69Selenopotein M n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5KUZ9_9PHAE4.040e-2855.92Sep15_SelM domain-containing protein n=1 Tax=Ectoc... [more]
UPI000C780D3A1.290e-638.27selenoprotein M-like n=1 Tax=Eurytemora affinis Ta... [more]
UPI0010F8920E1.690e-535.00selenoprotein M-like isoform X1 n=2 Tax=Osmia TaxI... [more]
UPI001E1D50C51.810e-535.71selenoprotein M-like n=1 Tax=Mercenaria mercenaria... [more]
A0A835CSK3_9HYME3.150e-535.90Sep15_SelM domain-containing protein n=1 Tax=Aphid... [more]
UPI00142554F23.560e-531.91selenoprotein M-like n=1 Tax=Anneissia japonica Ta... [more]
UPI001C9A31914.020e-533.33selenoprotein M-like isoform X1 n=2 Tax=Colletes g... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig19contigP-fluviatile_contig19:1833788..1839848 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionselenoprotein M
Ec32 orthologEc-21_003500.1
Exons5
Model size3782
Cds size333
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.3933995-UTR-P-fluviatile_contig19:1833787..18350321622815807.3933995-UTR-P-fluviatile_contig19:1833787..1835032Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1833788..1835032 +
1693563377.8999028-UTR-P-fluviatile_contig19:1833787..18350321693563377.8999028-UTR-P-fluviatile_contig19:1833787..1835032Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1833788..1835032 +
1622815807.4075937-UTR-P-fluviatile_contig19:1835052..18363071622815807.4075937-UTR-P-fluviatile_contig19:1835052..1836307Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1835053..1836307 +
1693563377.912837-UTR-P-fluviatile_contig19:1835052..18363071693563377.912837-UTR-P-fluviatile_contig19:1835052..1836307Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1835053..1836307 +
1622815807.4184825-UTR-P-fluviatile_contig19:1837235..18373221622815807.4184825-UTR-P-fluviatile_contig19:1837235..1837322Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1837236..1837322 +
1693563377.9272943-UTR-P-fluviatile_contig19:1837235..18373221693563377.9272943-UTR-P-fluviatile_contig19:1837235..1837322Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1837236..1837322 +
1622815807.4599817-UTR-P-fluviatile_contig19:1838986..18398481622815807.4599817-UTR-P-fluviatile_contig19:1838986..1839848Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1838987..1839848 +
1693563377.9592743-UTR-P-fluviatile_contig19:1838986..18398481693563377.9592743-UTR-P-fluviatile_contig19:1838986..1839848Porterinema fluviatile SAG_2381UTRP-fluviatile_contig19 1838987..1839848 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815807.4283705-CDS-P-fluviatile_contig19:1837322..18373371622815807.4283705-CDS-P-fluviatile_contig19:1837322..1837337Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1837323..1837337 +
1693563377.9352171-CDS-P-fluviatile_contig19:1837322..18373371693563377.9352171-CDS-P-fluviatile_contig19:1837322..1837337Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1837323..1837337 +
1622815807.4383879-CDS-P-fluviatile_contig19:1838360..18385911622815807.4383879-CDS-P-fluviatile_contig19:1838360..1838591Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1838361..1838591 +
1693563377.9432254-CDS-P-fluviatile_contig19:1838360..18385911693563377.9432254-CDS-P-fluviatile_contig19:1838360..1838591Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1838361..1838591 +
1622815807.4481091-CDS-P-fluviatile_contig19:1838899..18389861622815807.4481091-CDS-P-fluviatile_contig19:1838899..1838986Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1838900..1838986 +
1693563377.9510243-CDS-P-fluviatile_contig19:1838899..18389861693563377.9510243-CDS-P-fluviatile_contig19:1838899..1838986Porterinema fluviatile SAG_2381CDSP-fluviatile_contig19 1838900..1838986 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig19.3586.1prot_P-fluviatile_contig19.3586.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig19 1837323..1838986 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig19.3586.1

>prot_P-fluviatile_contig19.3586.1 ID=prot_P-fluviatile_contig19.3586.1|Name=mRNA_P-fluviatile_contig19.3586.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=111bp
MSLDEMHEVLVSRGFVRRADVPGLAEVKEKEAAADATAEAARKERAEAAT
RRRRERAEASAAKRKREFEPKGDKHDDLGNAQAAGLAAKRALDVEKLKAR
ANEAGGDGEL*
back to top

mRNA from alignment at P-fluviatile_contig19:1833788..1839848+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig19.3586.1 ID=mRNA_P-fluviatile_contig19.3586.1|Name=mRNA_P-fluviatile_contig19.3586.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=6061bp|location=Sequence derived from alignment at P-fluviatile_contig19:1833788..1839848+ (Porterinema fluviatile SAG_2381)
CATCGTAGCAGCTGTCGTCGTCGGTAAGTGCTCAAATCATACCTGTGGAT ACTTTTGAAATATCGTAAGTTCCCTGAGTTCGCAGTTCTCGCGGATGAGA TATCACATGTCTGGGGCGCGTTTTGTTGGCCCAAACGTGGTTTTGTGTTT GGTGGATCCAGGTGGCTGCCGCTGTGGGACACAGGACGGAGTTCTCGTAG TCATCAGTCGCGCCACAGGCAGCACCATTGATGCCGAAATTTTTGTAACG ATTGTTTCTTTGCCAGAATCCGCAACTAGACTTTAGGCGGGCGTGTCCAT GTATTAATACATTGATCCAAGCGGAGAGTGAGCACAAGGATTTGTGCTTC AGAACCTGAACACGTGCTTGCTCCCAGGCGGCTGCTGTTGTGTATGAATG ATGAGACACACCGAATGAAGCGGTCGCAGATGATTGGATGAGAAGCGCGA GAGATTTACCAGTTTGGAGCAATCTTTGGCTGAATGTGTTACGGCTGCCA AAAAGCGTTGATGATGGAGCCAAGTAAAATGCGGAGTGATTTTTGTCGGC CTGGGACAACCAACTTCAATTTTGACTCTTCTTGAACAACAGGGATTGAG CACTCAGCACGCACAGCGTGGAGATCATACTAGTAGGAAAAGGCGGTAGG CGTAATTTTTTTGCTGAGATCGCGTAGGTTGGCGGTAGCACTGTTTCCTC AGTGCACATCAAGAGAGTCCACCTCCAACCTTTGGCTAAAAAAAGGTGAG TTTTTGAAGGAGTTCCGACCTGAGCACCTTAATCAAGTACTCCGAGTAAC AACCTGCCGCAGATTACCCGCAGTCCAGGAGATTGGTGTCCAGGGCGGTA AGTACAGCTGTGGCAAAAAACTTGGTTTCGGTCCAGATTGCGGTGAAGTC GAGCTGCTGTTGCGACCTTCGATAACTTCTCCCCAGCAACAGACCTCAGC AAACCAAGACACGCGTCCCTTCTCCAAGGTGAAATATTATGATATCGCCT CTCAAGTCGGGACTCCCACGGCAGGAAGGTGGTGTACGGAGCTAACGCCT TATTATCGGGAGTTGAGTAAGGAGACTTTCAGCTTTTTAGCCCCACCTTG GCAGGTCACCCGTAAGGATCCGCTGAAAATCTAAGGAAAAAATTGTCAAC TAAAACCCAAGATGTGAGGGCCCCTCACACGACCGCCTTCTTGTGAAAGG AGTTCCGACCCTAAGTGCTTAATCAGTAGAGCATAGAGAGGCGACGTGCG AGTGGATTTGCTGAGGTCTGGTGCTTTGGTGGAGATATATCGGGGCCCCT GCAGCAGCTCAGCATCTCCGCAGGTTGGACCGTCACGTCACATCTTCCGC TGCCGTCATTGGCACGTACCTTCCGAACTGCAGGCAGCTAGAAATAAGCC ACTGCTGTATACCCGCCGTCCAGGAAGTTGGGGCCTGTAGCAGCGAGCAT AATAGTGGAAGTTGTGTGGTGTCAATCCAGAGTACGTAGTTTTCGTGCCA CTGCTTCGGCCTTCGATATCTCAGCCCCAGCAGCGGCTCTGGGCGTGCCA ACGGAAAACCCCGCTGCTGCAGTGTTTTCTACCCCAGTATTGAAATAAAG CCATGGGGTCGGGACTCCTCCAAATCTCACCTTTTTGTTCCTAAACAGCT TTGGCTCTTTTGACTTGATTTTAAAGTTGTGGATTTTTATCTTGGATTCA AAGAGGGAGTTTGGAGTCAGACATGATATGCACGTAGAGAGGGACCTTTT AAATCGCTCTGTGAGTAAACCGACGATTTTCTTCGTGCCCAATACCCTAC TACAGGTATGATGGACCTTCCTTTGGATCGCTGGGTGCTCATGCGCTATT TTTCATTTTTCGTTAAAACAGAGTCGGATTTCGGCGGCCCTTTAACACTC TGGCTCTGGCTAGCCACATGACGACCCGTTCTCCCATTCTCTCGCAACCT TGGCAGCGAAGACAGGGCCCCCGGAAAATGGATTTGTTCTTTGCAAAAGG ATTTTTCCGCGGCCGGCTAGCGTAGAATCAAACCCGCTGCTGCATACCTG GTAGTATTTTTACTCGACTATTGTCCCCACCCCTGTATGTCTAATTTGTT GCGGCCTTGGTCGGGTAGGTCTCCAGTCAAGGAGTAACGCCCCCCGGAAA CGAAGATCTTTCCCGTCGGAAAAAAGCAAGTAAGCTCGGGTGCTAATACT TCCTGTCAGTCGCCTTGAAAGAGAAACAACTCGGAAGCATTGAGCGACAG CCGCGCTCACCGGGTGCGACTTTCAAGACTTTCGTCTTTTTCTCTGTCCC CCTTCCCGGCCGTCCTTCCCGTTCTTCCGGAAGGAGTTTTGAGAGGATGA AGCTGTTCCCACCTGCGGTCGGGATGCTTGTGCTCGGGGCCCCGTCGGTC GTCGCTCAAGCCCTGAGGGGTCTAATCACCTCCTGCTCCGGATGAAAACT AAACAAGCTTCCGGAGGCGAAGAAGTTTATCAGCAACATCGACCACGCAC GCGGTTACGAGGACGTGGAGGTGAGTCTTACTATCGCTGTTGCTGTTGGT GCTGCTGTTGCTTTTGTTGTTCCTGTGGCTGGTTTAGAAAAATCGATTGC GAGGAGCAGTCAAGCCGCGTTGCGAACACCCGTGCAGTGAGGTGTGTGTT TTGACGGTCTAGTGCAACAAATAAGGTAACAGGCCTAAGGTTTCGACCTA GTCAGCTAGGAGGGTGAGCAAAACATTTTAGGAACGCCTCCAGTCCGCTG GAACCTTTTTTCCAAGTGCTGCCGTTCAAGTTGTCTTCTATGCCATCCGT CCAGGCTCAACCATCCGGGCATTGCAGCACATTGGCAAACCGGTGCTTCT ACCGTCTGCTATGGCGGTGTAAAAGCCGTTTTCTGCCGTGTAAACGCCAA GGAATAGAGATGCAAACCTAGCTTTGTATCGCGCGACTTCGCGTGGCCGT TGGGTCGTTGACCCTATAGGAAGATCCACGCACGTTCGCGACTTCCGCAA CCGCGAACACCTTGTGCGCGCTCTGTCGCTGCACCCCCGCTCTACCCCCA CCTGCCGTTCTTGAGCAAGGTCAGTAAGCCTTTGGCTGAACTGATGAGGA TGCTGCCCACCCTTCACGCGACTCGCCGAATGCATCACGGCGCTTTGCGC TTGGTGTATGCAGGAGCCTGGGCTGATGAAAACCCGGCAAATCACTCCGT CCCTAGCCAGTAGGGACGCGAGGGCTACGGCCTAACGATACGGCATGCGC AGACTGAGTCCCCCCCCTCCCCCCCCCCTGTCTTTCTCCTGCCGCCAATG GCACGAAGCTCCGTAGGGCCATCTTCCAACGTCCGACCCCCGCATGTCGC TACGACGTGCGTTTATTGCTCGCGCTTGATTCACGTGTCGGCTGTTCGCC TTTACCTTCGTTCTGCTCGATTGCCTGTTCTTTGCCCTTCACACCCAGGT CGAGTACAAGGCGGGTAAGCCGCCGATTCTGACGTTCTTCGACAAGACCT CCGGGGATGAGACCGAGAGCATCAATCTCGAGAAGATGTCTCTGGACGAG GTGGGTGATGTCTGTGTGTATGGCTGTAGGATGTAGTGGGCAATGACCTG GAGCGTGAACCCCAATAACCTTACCCTCGGGCAGGTGTGTGCGCTTGTGC GCGCGATTGATAAGTGGGTGTGTCGTGTTTATGGTGTTGTTTGTTGTGGC GAATCCTGTCGCATTGTGGCTCGGATGCAGTGCGGCGAGGCGCCATGCAC AGTGCGGTGGGACATATGAGCATCACATACGCCAAGACGTTTTGTGTGCA AGCGAGAGAGCCGCGAAGGTGGGGTACTTGTGGATGTTGATTCAGCAGGG AGCAGCCCACGGGAGGCCCCCGCGCCCAGCGCTGCACCTTCTCCCGGTAC CTCCTCCCGTCGTGCAACATATCTCTCCATGGGGCATGTTTTATGGCCCA CAAGCAGCGGCCGTTCGCGATGCCATCGTTGTTCTTGGCGCGACGGCGAG GTTACTTTTTTTTTTCGCCGCCCTTCCGTCTCGTAGCGGCCGCCTCGCTT CCAATCGTCCGCGAGTTACGGTGATTGGTTATGATCATATCCCGGGCGTA TGGTAGACCCATTACGGTTTGTGGGGAATGCTTACCAAAGTCGCTAAGTA CTTATTTTTGGGGTTTTTCTTCTTGTTGAAAGTTCTGAGATACTCCCGCC CTCGCTGCACCTTCGGCTGCTTGTGATACAAATAAGCGAGTCGGTTTGTC GAGTTTCCTCTTCCGTTACCTTCGATAATCTAGAGAGTTTTGTGTGTGCG CGTGCGTGTGTTTTTTTTTCCTTTTTCTTTTTTCCGCTGTGAGTAGAATA CTGTGCAATCTTTCGCCACACATTGTTTCACCTCAGCTTCTACTCCTTCG CACCTCAAGGTAGATTGGAACTTCACCTGCCGGTAGTGTTTCCGACGAGA TGGTCTAGGTTGAAGGCTGACAAACCGTGACACATCTCGAGGAGGGAACG AGTTTTTGACGCCATCGCCGCATGTTGTCGACATACATGCGCGCTTGCGC GTACATTGCCCGATCGTCGCCAGATGCACGAGGTTCTCGTCTCCCGAGGG TTCGTTCGCCGCGCGGACGTTCCGGGGCTCGCCGAGGTCAAAGAGAAGGA GGCCGCCGCCGACGCGACCGCCGAGGCGGCGCGGAAGGAGCGCGCCGAGG CCGCCACCAGGCGCAGGCGGGAGCGCGCCGAAGCCTCCGCCGCCAAGCGC AAGCGGGAGTTCGAGCCAAAGGGCGACAAGCACGACGACCTAGGGAACGC CCAGGTAACGCAAATACTCCGTACATTTGTCACGGTGCGACATCCTGGGA GAAGTTGTTATATTTTGTTTTATTTCTTATGGCTTTGTATTTGTTTTTGT TCGTGTTTCGGCACGCATCGATTTGTAGCGCTCGCACGACCCGATGTTTT TTCTCCTTACCGTCTGCGGTCACCGGATAAACAACGGAGCAACGTAGCAG AAGAGAGAGGGAGAGAATCGCGTGTTCAGCACCCTTCGTTGTGGGTATTG TTGTCCTTCTCGCTCACCAATCAATTGCTCCTCTCGTGCGATTTCTTGCC GTTGGCGCACAGGCAGCCGGTCTCGCTGCGAAGCGCGCGCTTGACGTGGA GAAGCTGAAGGCCAGGGCTAACGAGGCCGGCGGGGATGGAGAGCTTTAGT TTCGACGAAGAGAGCCTTTCGCCTCGGCTTTGCCTGCGCTTGTCGCTGAA CCACCCGTCTGTGTTGGTTTGTGTTTCCGTCGTTTCGCACAGAAGGACAA ATAAAAAACGAGCTCATGGGTGTGTGTGCGTGTGGAGGCTTTTGATGAAT GTTGGGCATTTTGCTCCCCTTTTGCGAGCGCCATTTTGACCTGCAGCGGC CGGTGTCCACCCTCGGTTGTGCGCTTGCATGCGTTGCTGGCCTTCAGCTC GGAAGTGTTGCCATGAACAAGGCGCGCGTTTCATCCGATAGTCTCCCGAC GATTGTCGTATGCTTTCATCGAGCGTAATGACGGATACCACTTGCTCAAA CCCCCGTTGCGTTGGGGATGCGTGTATCTTGAAGTGTTTCGAGTAAAGAC GACTCTCAGAGGGGGTTCTCCGGGTCGGACGACGGGCTTGTTGCGAAAGT TCAGATGGGGTATTTCAGAGGAATCAACGAACGGCCTCAAAGTGTGCTTT TGTAAGCTTTTACCTATAGGACTTTGGCAACGACGAATCGTCATGGAACG GGGTAGGGATATTGTTTATTGCTGCGCTCGTGGGAACTGCAGGAAACTAC CGAGTAATCGTTTCATGGCGGTCACGAAGAAAGCGATTCGATGACTCTCA GGTCGTTGCTGCGAGAAGGGGGGGAAGGTCGTGCCACGATCAAGTGTGTG TTCCCTCCCCTTGGCCCACGAAAGTGAACTTATTCGAATCGCACCGTCCA TGAGGAGAGATACCGACATGTTTTCGCTTCACCCCCCCCCATATGTTGCC GGGGTGACCACTTTATATAGGACCTCAGTTGCACTCCTCCAGGGCCTCGA AAGCAAGGGGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig19:1833788..1839848+

>mRNA_P-fluviatile_contig19.3586.1 ID=mRNA_P-fluviatile_contig19.3586.1|Name=mRNA_P-fluviatile_contig19.3586.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=666bp|location=Sequence derived from alignment at P-fluviatile_contig19:1833788..1839848+ (Porterinema fluviatile SAG_2381)
ATGTCTCTGGACGAGATGTCTCTGGACGAGATGCACGAGGTTCTCGTCTC
CCGAGGGTTCGTTCGCCGCGCGGACGTTCCGGGGCTCGCCGAGGTCAAAG
AGAAGGAGGCCGCCGCCGACGCGACCGCCGAGGCGGCGCGGAAGGAGCGC
GCCGAGGCCGCCACCAGGCGCAGGCGGGAGCGCGCCGAAGCCTCCGCCGC
CAAGCGCAAGCGGGAGTTCGAGCCAAAGGGCGACAAGCACGACGACCTAG
GGAACGCCCAGATGCACGAGGTTCTCGTCTCCCGAGGGTTCGTTCGCCGC
GCGGACGTTCCGGGGCTCGCCGAGGTCAAAGAGAAGGAGGCCGCCGCCGA
CGCGACCGCCGAGGCGGCGCGGAAGGAGCGCGCCGAGGCCGCCACCAGGC
GCAGGCGGGAGCGCGCCGAAGCCTCCGCCGCCAAGCGCAAGCGGGAGTTC
GAGCCAAAGGGCGACAAGCACGACGACCTAGGGAACGCCCAGGCAGCCGG
TCTCGCTGCGAAGCGCGCGCTTGACGTGGAGAAGCTGAAGGCCAGGGCTA
ACGAGGCCGGCGGGGATGGAGAGCTTTAGGCAGCCGGTCTCGCTGCGAAG
CGCGCGCTTGACGTGGAGAAGCTGAAGGCCAGGGCTAACGAGGCCGGCGG
GGATGGAGAGCTTTAG
back to top