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Homology
BLAST of mRNA_P-fluviatile_contig18.3267.1 vs. uniprot
Match: A0A6H5KZ61_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ61_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.180e-40 Identity = 76/127 (59.84%), Postives = 88/127 (69.29%), Query Frame = 1
Query: 1 MAPNPRTIQLWRRCLRCCNSMEGALGSHYRGFAREHIVAHKEEDDLKRLAYLLDKGEQNLRFVLRKYRMTEPRPPETSMAKAGNLTRRRQRRATAAMGEAAEWGEGEVAAAVGRRSNTPGSAWTPGR 381
M PNPRTIQLWRRCLRCC +MEGA+G++Y GFAREHIVAH+EEDD +R+ +LLDKGEQNLRFVLRKYRMTEPRPPE+ T++ E E AA G S+T WTPGR
Sbjct: 1 MPPNPRTIQLWRRCLRCCRAMEGAMGNYYHGFAREHIVAHREEDDAERVEHLLDKGEQNLRFVLRKYRMTEPRPPESLGTPERTRTKKTXXXXXXXXXXXXXXXEAEGAAGWGNDSST----WTPGR 123
BLAST of mRNA_P-fluviatile_contig18.3267.1 vs. uniprot
Match: D3BAM5_POLPP (Complex1_LYR_dom domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BAM5_POLPP) HSP 1 Score: 53.1 bits (126), Expect = 1.100e-5 Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 1
Query: 10 NPRTIQLWRRCLRCCNS-MEGALGSHYRGFAREHIVAHKEEDDLKRLAYLLDKGEQNLRFVLRKYRMTEPRPP 225
NP++I L+R +R N+ + ++Y F REH HK E D + + L++KG NL ++++KY TE P
Sbjct: 5 NPKSIALYRTIVRAINTKLPKQAQNYYWAFTREHFAGHKGETDPRDIDLLIEKGYNNLDWIIKKYNATEDAEP 77
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Complex 1 LYR protein |
| Ec32 ortholog | Ec-00_007730.1 |
| Exons | 3 |
| Model size | 952 |
| Cds size | 387 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815768.2572722-UTR-P-fluviatile_contig18:1607088..1607653 | 1622815768.2572722-UTR-P-fluviatile_contig18:1607088..1607653 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig18 1607089..1607653 - |
| 1693563270.4428017-UTR-P-fluviatile_contig18:1607088..1607653 | 1693563270.4428017-UTR-P-fluviatile_contig18:1607088..1607653 | Porterinema fluviatile SAG_2381 | UTR | P-fluviatile_contig18 1607089..1607653 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815768.2702713-CDS-P-fluviatile_contig18:1607653..1607926 | 1622815768.2702713-CDS-P-fluviatile_contig18:1607653..1607926 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig18 1607654..1607926 - |
| 1693563270.45106-CDS-P-fluviatile_contig18:1607653..1607926 | 1693563270.45106-CDS-P-fluviatile_contig18:1607653..1607926 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig18 1607654..1607926 - |
| 1622815768.2815824-CDS-P-fluviatile_contig18:1608631..1608689 | 1622815768.2815824-CDS-P-fluviatile_contig18:1608631..1608689 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig18 1608632..1608689 - |
| 1693563270.4605246-CDS-P-fluviatile_contig18:1608631..1608689 | 1693563270.4605246-CDS-P-fluviatile_contig18:1608631..1608689 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig18 1608632..1608689 - |
| 1622815768.29111-CDS-P-fluviatile_contig18:1608881..1608937 | 1622815768.29111-CDS-P-fluviatile_contig18:1608881..1608937 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig18 1608882..1608937 - |
| 1693563270.4699175-CDS-P-fluviatile_contig18:1608881..1608937 | 1693563270.4699175-CDS-P-fluviatile_contig18:1608881..1608937 | Porterinema fluviatile SAG_2381 | CDS | P-fluviatile_contig18 1608882..1608937 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig18.3267.1 >prot_P-fluviatile_contig18.3267.1 ID=prot_P-fluviatile_contig18.3267.1|Name=mRNA_P-fluviatile_contig18.3267.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=129bp
MAPNPRTIQLWRRCLRCCNSMEGALGSHYRGFAREHIVAHKEEDDLKRLA
YLLDKGEQNLRFVLRKYRMTEPRPPETSMAKAGNLTRRRQRRATAAMGEA
AEWGEGEVAAAVGRRSNTPGSAWTPGRL* back to topmRNA from alignment at P-fluviatile_contig18:1607089..1608937- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-fluviatile_contig18.3267.1 ID=mRNA_P-fluviatile_contig18.3267.1|Name=mRNA_P-fluviatile_contig18.3267.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1849bp|location=Sequence derived from alignment at P-fluviatile_contig18:1607089..1608937- (Porterinema fluviatile SAG_2381)
ATGGCTCCCAATCCACGCACCATCCAGCTGTGGAGGAGGTGCTTACGGTG
CTGCAAGTGAGGGAAATGCGATTGGATTGTTTTGAAGACGCCAAACCGGA
CAACAAAATTTGTTCGGAAAGGGGCGCCGGGTAGAGATGACACGGAAGCT
TCACGTCAACATAAAGGAAGCAACTGTTTTATGTAGTCAAGCTCTCACGT
TTTTCCCGTTCCGTTTGTCGCATATGTGCTCCTAACGGTACGCACAAGTT
CCATGGAAGGAGCCTTGGGGAGCCACTACCGCGGCTTCGCTAGGGAGCAT
ATCGTGGTGAGCCAGTTGTTGACAGAGCTGCCGGCACTGCCTGTCGCCGC
TGTAGCGAGCACGATACGGCACCACCACACGAACAGCTGTGCAATAAGCT
TGCGCCTGCTGAAAATCTAGTGAAAAGCGAGTGCAGGGAGATCCGTAGTA
GGAATTGCAACGTTTATATCTTGATATTTTTCGGTGACCAAACTCCTTCG
GCCCGGGCGAAGCTCCCATGATGTTCACGACACCACCGCTTGGGGGCGTC
CTTGGGACCTCCCAAAGAGGGTAAGCACCGCTCCGTGGCGCGCACACGCC
AAGGCAAGAGAGGCGTGGGCCCGAAGCATTATCTTCACAGAGTAAATGCA
AAGCAGCCGCATGGTCGCGTGCCCGACGTGGCGGATTGCGGTGTTTGTCA
TCGCCCACCGTTCACCTCTCGCGGCAAAAAGGGGAAGGTCCTCGATTGTG
GTGGAGTGCGGGAATTTTCAGCCCGAACTGCTGTACCGGGAACCCGCTCG
ATTGAACACGCACTATTGAGCCCCCCGCACTGAACGCGTCGGCATCCTTT
GAACTCTTGTCGAATAGCATCCCTGATGCAGAATTCTGCCGCGATGGCGC
AGCTACTCTTCGGCAGAGGGTGCGTGGCTCGAAAAGGGTCTTTGAACAGG
AGCCCATCACCGTTCTTCTCGCGTTTCCCCTCGTGTGCCCCCTCCTAACA
ATATCCTGAAGGCCCACAAGGAAGAAGATGACCTAAAAAGGCTCGCATAT
TTGCTGGATAAGGGCGAGCAAAATCTGAGATTTGTCTTGAGAAAATACAG
GATGACAGAACCACGACCGCCTGAGACTTCGATGGCAAAAGCGGGCAACC
TGACGCGACGGCGACAGCGACGCGCGACAGCCGCGATGGGGGAAGCGGCG
GAGTGGGGGGAGGGCGAAGTTGCAGCAGCGGTGGGGAGGAGGAGCAACAC
ACCCGGTAGCGCGTGGACTCCTGGTCGATTATAGTCGAGCCCTTCAGGTT
GACAGCAAAAGTGGAAGTGGCAAGCCTGCTGGCAAGCTACTTGAGAACAA
CCATACCACCGTATATTTTCGGTTTTGAATCGTTTCAGTGCGGCGGCGCA
TCATTATCCGGAAGTTCTTCGCTGTAAGAAGTGAATATCTGCCTGAAAAA
AATCAGCGTCACGGCCCGTGAATGTGTCATTCGGACGCAGCTTGGCTTGG
CTCGCAAGTTCCAGTCTCGGGACGTCATCTGAGGGAGTGCATGTCACGCA
AGAAGCCAAGCCTTGCAAGCGCATACTTCAAACGTCAAGCACATCGAGTT
TCATGCCCCGGTTTGGTCGTGGTGGGGCACAGCTAGGTTTTGATTCGTGC
CCCTCAGATTCGCTCGCGCAGTGATGTGCTCGCTGTCTTGATTCATGGCG
GAGGAGACCGAGGACGGGGAAGATGATCAAAAGTCGAACGGTGGGACGTC
CGTTCGTACACCCGACGACCCCGCAAACGCGAATGCAGAGCGGATCACCA
CATGAACGGGTGTTGGCGGCAGCAGCAAGACAACCACGTTTTGTCGGGA back to topCoding sequence (CDS) from alignment at P-fluviatile_contig18:1607089..1608937- >mRNA_P-fluviatile_contig18.3267.1 ID=mRNA_P-fluviatile_contig18.3267.1|Name=mRNA_P-fluviatile_contig18.3267.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=774bp|location=Sequence derived from alignment at P-fluviatile_contig18:1607089..1608937- (Porterinema fluviatile SAG_2381)
ATGGCTCCCAATCCACGCACCATCCAGCTGTGGAGGAGGTGCTTACGGTG
CTGCAAATGGCTCCCAATCCACGCACCATCCAGCTGTGGAGGAGGTGCTT
ACGGTGCTGCAATTCCATGGAAGGAGCCTTGGGGAGCCACTACCGCGGCT
TCGCTAGGGAGCATATCGTGTTCCATGGAAGGAGCCTTGGGGAGCCACTA
CCGCGGCTTCGCTAGGGAGCATATCGTGGCCCACAAGGAAGAAGATGACC
TAAAAAGGCTCGCATATTTGCTGGATAAGGGCGAGCAAAATCTGAGATTT
GTCTTGAGAAAATACAGGATGACAGAACCACGACCGCCTGAGACTTCGAT
GGCAAAAGCGGGCAACCTGACGCGACGGCGACAGCGACGCGCGACAGCCG
CGATGGGGGAAGCGGCGGAGTGGGGGGAGGGCGAAGTTGCAGCAGCGGTG
GGGAGGAGGAGCAACACACCCGGTAGCGCGTGGACTCCTGGTCGATTATA
GGCCCACAAGGAAGAAGATGACCTAAAAAGGCTCGCATATTTGCTGGATA
AGGGCGAGCAAAATCTGAGATTTGTCTTGAGAAAATACAGGATGACAGAA
CCACGACCGCCTGAGACTTCGATGGCAAAAGCGGGCAACCTGACGCGACG
GCGACAGCGACGCGCGACAGCCGCGATGGGGGAAGCGGCGGAGTGGGGGG
AGGGCGAAGTTGCAGCAGCGGTGGGGAGGAGGAGCAACACACCCGGTAGC
GCGTGGACTCCTGGTCGATTATAG back to top
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