mRNA_P-fluviatile_contig17.2903.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig17.2903.1
Unique NamemRNA_P-fluviatile_contig17.2903.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig17.2903.1 vs. uniprot
Match: D8LIB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB1_ECTSI)

HSP 1 Score: 431 bits (1109), Expect = 1.160e-146
Identity = 214/264 (81.06%), Postives = 236/264 (89.39%), Query Frame = 1
Query:    1 MWAKHSSPIIIRRAKRAAIVAAPVILVGGWAASVLSERRKAPAEIRFSIGSADDVLTEHLKTGDIVLFSRRWTQMLPAGAALSTFKKRVFDTRFDHTGVIVADRFGTPHVAEVTYKGIKLRRFDERILWSKCNEIMVIPLNFKVSEENRAKVERHVKGMTYREPIADMLWLELLGALKAKTTKPEEWATPPEYVTEPNIIGKIVPASPAVQLVMSCLDVSGAVDAAAVADWKYPLAITPRDLELGAVPLKEGASFGEAHTVRVR 792
            MWAKHSSP++IRRAKRAAI A+P + VG WA  VL ERRKAPAE+RFSIGSADDVLTE LKTGD++LFSRRWTQMLPAGAALS  K+ VFD+RFDH GV+VADRFGTPHVAEVTY GIKLRRFDERIL SKCNEIM+IP+NFK SEE RAKVERHVKG+TYREPIA+ LW++LLGALK KTTKP EW  PP+YVTEP IIGKIVPASPAVQLVMSCLD++GA D AAVA+WKYPLAITP+DLE   VPLKEGA+FGE HTVRVR
Sbjct:    1 MWAKHSSPMMIRRAKRAAIFASPFVAVGLWAGYVLKERRKAPAEVRFSIGSADDVLTEQLKTGDVLLFSRRWTQMLPAGAALSVMKRSVFDSRFDHAGVVVADRFGTPHVAEVTYTGIKLRRFDERILRSKCNEIMLIPVNFKCSEETRAKVERHVKGLTYREPIANTLWIDLLGALKLKTTKPGEWGKPPKYVTEPPIIGKIVPASPAVQLVMSCLDMAGAADGAAVAEWKYPLAITPKDLENCEVPLKEGANFGEPHTVRVR 264          
BLAST of mRNA_P-fluviatile_contig17.2903.1 vs. uniprot
Match: A0A835ZIB1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIB1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 2.930e-46
Identity = 107/264 (40.53%), Postives = 150/264 (56.82%), Query Frame = 1
Query:   40 AKRAAIV---AAPVILVGGWAASVLSERRKAPAEIRFSIGSADDVLTEHLKTGDIVLFSRRWTQMLPAGAALSTFKKRVFDTRFDHTGVIVADRFGTPHVAEVTYKGIKLRRFDERILWSKCNEIMVIPLNFKVSEENRAKVERHVKGMTYREPIA-----DMLWLELLGALK---AKTTKPEEWATPPEYVTEPNIIGKIVPASPAVQLVMSCLDVSGAVDAAAVADWKYPLAI-TPRDLELGAVPLKEGASFGEAHTVRVRL 795
            AKRAA+V   AAP++ + GW+  V  ERRK PA   F +GS DD+L + LKTGD++LF R W  M P  AAL+   + VF+TR+DH G+++ DRFG P V EVT  G++LRRFDER+ WS+ +EI+ +PL     +E R K ER+ + +T    +A       +  EL G LK   A         +P     +  + G+ + AS    LV++ LD  G VD AAV     P  + +PRDL  G +PL  G ++     + VRL
Sbjct:    2 AKRAALVVGTAAPILALSGWSVYVTQERRKPPANTDFVVGSTDDILADKLKTGDLLLFRRNWALMQPPAAALALAARAVFNTRYDHVGLVIKDRFGVPLVLEVTQLGLRLRRFDERVSWSRSDEIVALPLRAAPPDEARVKAERYARSLTPERRLAWAQPSQSMSAELAGLLKYWLANRAARRRGTSP-----DAKLWGEGLVASRDAALVLATLDKMGLVDLAAVEREVAPAQLLSPRDLVEGRLPLTGGNAYLAGQELLVRL 260          
BLAST of mRNA_P-fluviatile_contig17.2903.1 vs. uniprot
Match: A0A6G0WTL4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WTL4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.280e-15
Identity = 50/145 (34.48%), Postives = 77/145 (53.10%), Query Frame = 1
Query:   52 AIVAAPVILVGGWAASVLSERRKA---PAEIRFSIGSADDVLTEHLKTGDIVLFSRRWTQMLPAGAALSTFKKRV--FDTRFDHTGVIVADRFGTPHVAEVTYKGIKLRRFDERILWSKCNEIMVIPLNFKVSEENRAKVERHVK 471
            A+ A P + + GW+  V+  R +A   P    F  GS DDV+++ LKTGD++LF R    M P          +V  + ++F+H G I+ +  G   V E TY G+K R +  RIL S   +I+V+PL  K ++E  A   + V+
Sbjct:    9 ALSALPFVSIAGWSGFVVMARSQAKNPPRGYNFITGSMDDVMSDTLKTGDLILFRRNCAYMQPMDGLGCFLTSQVDQWKSQFNHCGFILVNHVGDKFVVEETYSGVKCRPYSARILTSLSTDIVVVPLRVKRTKEMEAAAAQFVQ 153          
BLAST of mRNA_P-fluviatile_contig17.2903.1 vs. uniprot
Match: A0A485K7A3_9STRA (Aste57867_325 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K7A3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.810e-15
Identity = 49/139 (35.25%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   52 AIVAAPVILVGGWAASVLSERRKA---PAEIRFSIGSADDVLTEHLKTGDIVLFSRRWTQMLPAGAA--LSTFKKRVFDTRFDHTGVIVADRFGTPHVAEVTYKGIKLRRFDERILWSKCNEIMVIPLNFKVSEENRAK 453
            A+ A P + + GW      +R  A   P  + F+ GS DD++++ LKTGD+VLF R    M P  AA    T K   + ++++H G I  +  G   + E TY G+K R +  RIL S   +I+V+PL      E  AK
Sbjct:    9 ALTALPFVSIAGWTGFAAYQRTNANSPPRGLTFNTGSMDDIMSDTLKTGDLVLFRRNCAYMQPLDAASCFLTGKVESWKSQYNHCGFIFVNHIGDKFIVEETYSGVKCRPYSARILTSMSTDIVVVPLRRTKEMELAAK 147          
BLAST of mRNA_P-fluviatile_contig17.2903.1 vs. uniprot
Match: A0A7S3XLF3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XLF3_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 1.210e-14
Identity = 61/181 (33.70%), Postives = 90/181 (49.72%), Query Frame = 1
Query:   37 RAKRAAIVAAPVILVGGWAASVLSERRK---APAEIRFSIGSADDVLTEHLKTGDIVLFSRRWTQMLPAGAALSTFKKRVFDTRFDHTGVIVADRFGTPHVAEVTYKGIKLRRFDERILWSKCNEIMVIPLNFKVSEENRAKVERHVKGMTYREPIADMLWLELLGALKAKTTKPEEWATP 570
            R K  AI+   V    GW  S  SE ++   +P  + F+I S D      L+TGDI+ F R    + P    LS   K +    FD  GVI+ DR+GTPHV E ++ GI L R+D RI  S   EI+++PL  + S E++ K  R  + +   +  A    +E    ++A+ T  +   TP
Sbjct:    4 RTKVGAILFGAVSPFMGW--SFYSEYQRNLHSPDSLEFNIASIDAQFMNTLRTGDIIFFRRNPFMLQPLQGILSWATKLLTGCDFDQCGVILNDRYGTPHVFEFSHSGITLTRYDHRIKLSMAEEIVLLPLIPESSSESKTK--RLTEQLERAKKAAVRAQIEQTAFIRAQATTTDNSMTP 180          
BLAST of mRNA_P-fluviatile_contig17.2903.1 vs. uniprot
Match: A0A024U754_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U754_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.000e-14
Identity = 51/145 (35.17%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   52 AIVAAPVILVGGWAASVLSERRKA---PAEIRFSIGSADDVLTEHLKTGDIVLFSRRWTQMLPAGAALSTFKKRV--FDTRFDHTGVIVADRFGTPHVAEVTYKGIKLRRFDERILWSKCNEIMVIPLNFKVSEENRAKVERHVK 471
            A+ A P   V GW   V+ +R  A   P    F+ GS DD++++ L+TGDIVLF R    M PA A        V  +   ++H G I  +  G   V E TY G+K R +  RI+ S   +I+V+PL  K + E +  V   V+
Sbjct:    9 ALAALPFATVAGWTGMVMYKRESANHPPRGFTFNTGSMDDIMSDTLQTGDIVLFRRNCAFMQPADALSCFLADHVPSWQGPYNHCGFIYVNHIGDKFVVEETYSGVKCRPYSARIITSLSTDIVVVPLRVKRTPEMQNSVRDFVE 153          
BLAST of mRNA_P-fluviatile_contig17.2903.1 vs. uniprot
Match: W4FI40_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FI40_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.750e-14
Identity = 56/148 (37.84%), Postives = 73/148 (49.32%), Query Frame = 1
Query:   52 AIVAAPVILVGGWAASVLSERRKAPAEIR---FSIGSADDVLTEHLKTGDIVLFSRRWTQMLPAGAALSTFKKRV--FDTRFDHTGVIVADRFGTPHVAEVTYKGIKLRRFDERILWSKCNEIMVIPLNFKVSEEN----RAKVERHV 468
            A+ A P+  V GW   V   R  A    R   F+ GS DD+L++ L+TGDIVLF R    M PA A       RV  +   ++H G I  +  G   V E TY G+K R +  RI+ S   +I V+PL  K + E     R  VE HV
Sbjct:    9 ALAALPLASVAGWTGVVAYTRESANHPARGYSFNTGSMDDILSDTLQTGDIVLFRRNCAYMQPADAVSCFLGDRVPIWQGPYNHCGFIYVNHIGDKFVVEETYSGVKCRPYSARIITSLSTDIAVVPLRVKRTPEMQMAVRDFVEEHV 156          
BLAST of mRNA_P-fluviatile_contig17.2903.1 vs. uniprot
Match: A0A024U6B1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U6B1_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 2.890e-14
Identity = 51/145 (35.17%), Postives = 73/145 (50.34%), Query Frame = 1
Query:   52 AIVAAPVILVGGWAASVLSERRKA---PAEIRFSIGSADDVLTEHLKTGDIVLFSRRWTQMLPAGAALSTFKKRV--FDTRFDHTGVIVADRFGTPHVAEVTYKGIKLRRFDERILWSKCNEIMVIPLNFKVSEENRAKVERHVK 471
            A+ A P   V GW   V+ +R  A   P    F+ GS DD++++ L+TGDIVLF R    M PA A        V  +   ++H G I  +  G   V E TY G+K R +  RI+ S   +I+V+PL  K + E +  V   V+
Sbjct:    9 ALAALPFATVAGWTGMVMYKRESANHPPRGFTFNTGSMDDIMSDTLQTGDIVLFRRNCAFMQPADALSCFLADHVPSWQGPYNHCGFIYVNHIGDKFVVEETYSGVKCRPYSARIITSLSTDIVVVPLRVKRTPEMQNSVRDFVE 153          
BLAST of mRNA_P-fluviatile_contig17.2903.1 vs. uniprot
Match: A0A7S3HD07_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HD07_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.540e-12
Identity = 44/112 (39.29%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   91 AASVLSERRKAPAEIRFSIGSADDVLTEHLKTGDIVLFSRRWTQMLPAGAALSTFKKRVFDTRFDHTGVIVADRFGTPHVAEVT-YKGIKLRRFDERILWSKCNEIMVIPLN 423
            AA + + +R    E  F  GSADD++ + L++GD+VLFSR+W       A L   ++  +   +DH+G+IV  + GTP+V E T  +G++ RRF+ERI  S  + I+V+ LN
Sbjct:   29 AAVIETRKRFVGIEPEFRQGSADDMVADSLRSGDVVLFSRKWYNYHLPTALLVKAQEAFYGGEYDHSGIIVM-KAGTPYVLETTPIRGVQCRRFEERIRHSASSHIVVLTLN 139          
BLAST of mRNA_P-fluviatile_contig17.2903.1 vs. uniprot
Match: A0A3R7BGB1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7BGB1_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.840e-12
Identity = 50/136 (36.76%), Postives = 67/136 (49.26%), Query Frame = 1
Query:   52 AIVAAPVILVGGWAASVLSERRKAPAEIR---FSIGSADDVLTEHLKTGDIVLFSRRWTQMLPAGAALSTFKKRV--FDTRFDHTGVIVADRFGTPHVAEVTYKGIKLRRFDERILWSKCNEIMVIPLNFKVSEEN 444
            A+ A P+  V GW   V   R  A    R   F+ GS DD+L++ L+TGDIVLF R       + A       RV  +   ++H G I  +  G   V E TY GIK R +  RI+ S   +I V+PL  KV + N
Sbjct:    9 ALAALPLASVAGWTGVVAYTRESANHPARGYSFNTGSMDDILSDTLQTGDIVLFRRN------SDAVCCFLADRVPSWQGPYNHCGFIYVNHIGDKFVVEETYSGIKCRPYSARIITSLSTDIAVVPLRVKVQKGN 138          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig17.2903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LIB1_ECTSI1.160e-14681.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZIB1_9STRA2.930e-4640.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6G0WTL4_9STRA4.280e-1534.48Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485K7A3_9STRA5.810e-1535.25Aste57867_325 protein n=1 Tax=Aphanomyces stellatu... [more]
A0A7S3XLF3_HETAK1.210e-1433.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A024U754_9STRA2.000e-1435.17Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
W4FI40_9STRA2.750e-1437.84Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A024U6B1_9STRA2.890e-1435.17Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A7S3HD07_9STRA1.540e-1239.29Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A3R7BGB1_9STRA1.840e-1236.76Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig17contigP-fluviatile_contig17:88894..96526 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score434.9
Seed ortholog evalue3.2e-119
Seed eggNOG ortholog2880.D8LIB1
EggNOG OGs2B8GN@1,2S0RR@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_001480.1
Exons6
Model size1670
Cds size936
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.695958-UTR-P-fluviatile_contig17:88893..896271622815719.695958-UTR-P-fluviatile_contig17:88893..89627Porterinema fluviatile SAG_2381UTRP-fluviatile_contig17 88894..89627 -
1693563022.656905-UTR-P-fluviatile_contig17:88893..896271693563022.656905-UTR-P-fluviatile_contig17:88893..89627Porterinema fluviatile SAG_2381UTRP-fluviatile_contig17 88894..89627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.7075899-CDS-P-fluviatile_contig17:89627..897701622815719.7075899-CDS-P-fluviatile_contig17:89627..89770Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 89628..89770 -
1693563022.6658268-CDS-P-fluviatile_contig17:89627..897701693563022.6658268-CDS-P-fluviatile_contig17:89627..89770Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 89628..89770 -
1622815719.7185304-CDS-P-fluviatile_contig17:89842..901501622815719.7185304-CDS-P-fluviatile_contig17:89842..90150Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 89843..90150 -
1693563022.6737514-CDS-P-fluviatile_contig17:89842..901501693563022.6737514-CDS-P-fluviatile_contig17:89842..90150Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 89843..90150 -
1622815719.7287226-CDS-P-fluviatile_contig17:91212..913051622815719.7287226-CDS-P-fluviatile_contig17:91212..91305Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 91213..91305 -
1693563022.6813002-CDS-P-fluviatile_contig17:91212..913051693563022.6813002-CDS-P-fluviatile_contig17:91212..91305Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 91213..91305 -
1622815719.738709-CDS-P-fluviatile_contig17:92299..924631622815719.738709-CDS-P-fluviatile_contig17:92299..92463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 92300..92463 -
1693563022.688954-CDS-P-fluviatile_contig17:92299..924631693563022.688954-CDS-P-fluviatile_contig17:92299..92463Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 92300..92463 -
1622815719.7486544-CDS-P-fluviatile_contig17:94754..948251622815719.7486544-CDS-P-fluviatile_contig17:94754..94825Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 94755..94825 -
1693563022.6991668-CDS-P-fluviatile_contig17:94754..948251693563022.6991668-CDS-P-fluviatile_contig17:94754..94825Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 94755..94825 -
1622815719.7592702-CDS-P-fluviatile_contig17:96369..965261622815719.7592702-CDS-P-fluviatile_contig17:96369..96526Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 96370..96526 -
1693563022.7091627-CDS-P-fluviatile_contig17:96369..965261693563022.7091627-CDS-P-fluviatile_contig17:96369..96526Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 96370..96526 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig17.2903.1prot_P-fluviatile_contig17.2903.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig17 89628..96526 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig17.2903.1

>prot_P-fluviatile_contig17.2903.1 ID=prot_P-fluviatile_contig17.2903.1|Name=mRNA_P-fluviatile_contig17.2903.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=312bp
MWAKHSSPIIIRRAKRAAIVAAPVILVGGWAASVLSERRKAPAEIRFSIG
SADDVLTEHLKTGDIVLFSRRWTQMLPAGAALSTFKKRVFDTRFDHTGVI
VADRFGTPHVAEVTYKGIKLRRFDERILWSKCNEIMVIPLNFKVSEENRA
KVERHVKGMTYREPIADMLWLELLGALKAKTTKPEEWATPPEYVTEPNII
GKIVPASPAVQLVMSCLDVSGAVDAAAVADWKYPLAITPRDLELGAVPLK
EGASFGEAHTVRVRLFFFFLKSCAAAVVLHTFEGFGSLTSRLVQLWYFPQ
PSPFLQDFACQ*
back to top

mRNA from alignment at P-fluviatile_contig17:88894..96526-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig17.2903.1 ID=mRNA_P-fluviatile_contig17.2903.1|Name=mRNA_P-fluviatile_contig17.2903.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=7633bp|location=Sequence derived from alignment at P-fluviatile_contig17:88894..96526- (Porterinema fluviatile SAG_2381)
ATGTGGGCGAAGCACAGCAGTCCGATAATAATCCGCCGCGCGAAGCGCGC GGCGATCGTTGCGGCCCCCGTCATCCTGGTGGGCGGCTGGGCGGCGAGCG TGCTCAGTGAGAGGAGGAAGGCGCCAGCCGAGATCCGATTTTCGATCGGC TCTGCGGGTGAGTTGCTGACCTCACCCGGGGAGAGGGAGAGCGAGAGAGA GAGAGACAGAGACAGAGAGAGAGGAGGGGGGGAAGGGGGGGGGTAGAGAA AGCTTGTGCGCTGGGATATCGCTTCCAGCACCAGCAGCAATTACAGCAAT AGTAGCAGAAATGTGGTGAGCGGCCGGCTGGGTTCAGTTACTGTGTGTCT CGGTAATGCCTGGGAGAGCGAGCTGCTACAGTGGGAAGAAAGCTCTGACG AAGAGTCCAACTGCTGCTGTTCTCGATCCGAGTCTCCGTGAAGGGAGTTG CCGCTGCCAGCACTGCAGTGCGGAGGGAGGCGAAAGATAGAGGGACGTGA GATTCGTACCCACTCGATCCTGCCGTTGGAGTAGCAAGGCTTTGTCTGAG ACCTCAACCTAGATGCCTGCGCGAGAAGTGTCCCATGTAGACCTGACCTC AGTGTGCCGAGACCGTGACACAGCACCAGCACCACCATTGACTAGGCAGC GCGCTTGACCTGGAAACGCGTGCGAATCGATCGCTGATTAGATGTATTTT TGTCGTCCAGACCCTCTGACGTTCAAAGGGGGTTCACGGCTTTTGTGCTG CTGTTGGAGACGCCCAGATCACGCGTAGATCAGGGCTTTTGAATGTTATC AGGAGACACATATTTTTCGTGAAGAGGACTGAACTCTTGTTACGTACGAA CACTGGTGTTGTCGCATGGACAATAGCCCCGCCGACCAAACATGTGGTCG ATCGCACCCCACTGCGCTCCCTCTCAGCTCGCTCCTCCTTCGCTCCTCCT TTCAAACACTGCTTTTATTGTTGCCAGCAGCACCGTCCGCGCGGCTGCAA AACGAAAATCTTACTCTCGGATTCCGAAATGGGATTTCTCTAAATTGAAA CACATCCCAAGTTCCGCGAAAAAAGAAAAAGCACACCGTCCACGCCCACC ATAAAAATGCTCCCACTCCATGGACTCCCCTGGCCTCAAGAGACTGGCAT CCAACCTTGTGGGGGTGAGGCTGCATGAACGGGTTGCGCGCGTCTAGACG ATGGGGGTGCGGGAAGGACGAAAAATTCACGGAGCCCCCTGTACCGTACA ACGAACGCTGTTGACAATCTCCCGTTTCCTTCAGGGAGTTGCTTCCCGCC TTGGATTACCATTTGGGATGAGGTAGTCGTCAGTGCTGTCTGCCCGCTGC TGGCAGATCTTGAGCAACACGCGCACACGAACGCACACGCACACACGGGC GATGGCTTCGATGCCGCGCTCATGGACTGTTCCTTCAGGATGAGCCTCTT CGAGCGATGGGATTTGTGGGCTCCGCAACACCATGAGGTCGTCGAGACGT CGTTGGTTCCAAATCCGAACCAGTTTCCGTATGCCCGGGATCGGGCCGTC GCTCTCGCATCTCTAAAGCCTTGTGTTTGCCGGCGGGATGGAGCACGCCC GACGCCTGACTATACATAATACTAAAACGAAGTACAAAACGATTTCAATC ACAAGTTCACCTCTGCTTACGAATGGCTTGTTCGCCTCCGCGGCCAATCA GATGACGTTTTAACGGAGCATCTCAAGACGGGGGACATCGTGCTCTTCAG CCGAAGATGGACGCAGATGTTGGTGAGTGAAGGAGCAAGGAGGGTGGGGG GCGTACTCTTATGTTTTGCATGCCTTAGCAGTTAGACCATTGACTACTCG TCCTCAAGAGAACGGAGCGTTGTTCCCACAGGACCGATCACTGATGGCCA ATCGCTCCTTTCTACTTTGCCAAAGGTGGCCCAAAAATGTCTTCCCTAGT CTGTCTATCCTAACGATATCCCTTCCCGCCTTTTCAACCCACCTCCTGTA CCCCAGTACAGCTACCGTCCTTTCCTCTCTATTCCATGCCTAAAACATCT CCCTGTACGTCCCATCTATTTTTCCCAGCTCAGTTACGTGCACTTCTCAC TCCTTCTTGTACCACGGACATTCCGCGACTACATGAACACGGTCTTCGCA TCCGAAGCCGCAATCACATTTGAACTCATCGTCTTCGTCGCCTACCGTCT ATATGTCTTCGTCGACGTTCTCGAAGGCCTATGTCCCCGGTCCTGAATTT TACTTTAAGCTTTGTTCCTGCATCCATTGGTCCATTTAGGTAATCCTTGA ACCCTATTCCTTCCTTCAGCATTCCGTACACTTCTAGACCCTCCTTATCC TTGGTTTCTTGTTTTAGATACTGTTCTTCCCTCTCGGCGCAAGCAACAGA TATCTTCTCCTTGAACCCCGATAGACCCTCCGTTTCCAGCGTTTCATCTT CGTCGACGTCGAGCCCCTTCCATAGGTCCTCTACAACCTTGACCCATTCC GTGGGTTGTCTGCCCCTCTTTTTGTTTGCCCACGTCGCCTCCCATACAAT TTCTGGGCAACCTCTCCTCTCCCATCCCGCACATGCGATACTGCCATGTC AGCTTCCTTGCGTCTCTTCCCGACCGTAGGGATTGGATCCCCAATTCTGC CCTGACGGCTGCATTGCTTGTGCGCTTGGAGCATCCTAGGATGGTTTTCG CTGCTTTCATCTGCGCCGCCTCAAGTTCTTTCACTACCTCCTTATTTCGT TCTCATACTTCTCCGGCTTACTCTAGCGGCGGTACGACTACGCTCTCCAC AACCTTCAATTTGATGAGTGTATCGACGTGCCGGTTTGCGAGTATTGGGT GCAGGTTCCCTGCTCGTGCTTTTCCTTTTCCGCTACCTTGGACACGAAGG AGCAAGGAGGGGGGGGGAAGAATCGATTGTTGTTTTTTAAGCGCGATGTA AGGCACAGGAGGATATGCAGATCCAAAGGAATCAAACGTGAAGACAGTAG AGGAGGAGACGCTGATGCAGATGAATGGCAAGAAGGACAAGGAAAGGCTC ATGCGTTGGCGATTGAAACGACGAAAAGGAGGACGAAATGAAGATGTTAA TGCGTCAGAAAAATAAGTGGCAAGTGAGGAAGAGGTTCTTGAAGCACGGT ACCCCAAATGCGCCTATTGGATTGTGCCGCTGCCCGCATTAGGGCCCGTC AGATCACTGGGCACTAGTGCCCACAACCCCCGTCCTGAATGGGACCGGTG GCCGACATCGTACCGGACAAATTTACCGGCACTTTGAGGAACCCCTGCCC TGCTACGCTCGCAACGCGCTTCCACGTACTCGTGAGTGAGCAAGCGGCAA TGGATGAAATCGAATTTGCCGAAACATATACCCGTAGGTGTGGTCGCATC GGTTCTCCCAAGGTGTGCGAAAACACGATCGTGTGGTGTACTTTTTCCAC GATTCGTTCTTCCAGCCTAAGACGGGCGCCAATTCCGTTGAGAAGAGTTC AGAGGAGTAAGTGCCCTTTTTTCTCTATTTCAGCTTCAACATTCGGCAGG CAATGAACACTAACAGTCTTTGGGGCAGAAATACATGGACAGACACGACG CGGTGTATTCGCCATAGCCCACACCCCCTTCGGATCGGCCGATCTACGAC GAAAGCAAGGAACAAATAAGTGCGGCCTTTCCTCCTTGCCCGGCCCGTCA CTCTGTCGCCTTTGGCCGACTGGTGACGGAGTAGGGGACCGACCCCCTCC GTTATCCGATGGTCAGGTGGCCCAGTGAATGAACAGATCAGGATTCTTCC ACCTCCTCTGTGGTGGGCTAGCGGTCAGATGATTACCGAAGTGTCAAAAT GGGATCGGCCCCCGTTCCCGCCCATCCTCCTGCTCTCTTGTTTCAATATG TGAGTTTTTGATGAAAGAATGTGGTTAATGAATAAAGGAGTTCGCCCTTC TGATCTAAGATTCGAACTGATGCTCGTCGTGAGAAATGAACACGACTTCA TTGCGCCCCTCTTCCCCCCAACCCCCGTATGCTCGCCCCTGCGCCCCCCC GCCGCGGCGGTAGCCTGCCGGGGCCGCCCTGAGCACGTTCAAGAAGCGCG TGTTCGACACCCGGTTCGACCACACCGGGGTTATTGTCGCCGACCGGTTC GGCACGCCGCACGTGGCGGAGGTCACCTACAAGGGCATCAAGCTACGGCG CTTCGACGAGCGGATACTCTGGTCAAAGTGAGTCATTCGGCCGACTGACA AGATTGTTCCGGAGAAGTGGCGGCGTAGGGTGCATCTTGATCGGAACGAC CCATTTCCTTCGAGTGGTGCGCGCGTGATGGGTGGGATTCAGGCAAGGGG GTCGAGTCTGATGAGGTGTGCGTGGTGTGTTTGAGGGAAGGCAGTCGATG TGTGAGTCTGCGTGATGTGAGGCCGCGTGATGTGAGGCCGCGAGAGCTCG TGCCGTGCGTGTGTTGCACGTCTGAAACCACTTGGGACAAGCTGCGAGGT CTTTCACGAACCCAGGCGAGATTCAGGCGGCGAGTTGTAGGTGCATAACG ATCGTAGATTCGGCCGTTGGCGGGGAGGGGGTGTCCATCTATTCCTTTCC TTGAACACTTTAACATCTACCACGGCGGGAAGTGCACCGGCTTTGGGCGT AACCCAGCGAAATTTTACGGTGCCATCAGGCCTGCTCTCACTGCCTTAAG CTCTTGTTTTGCTGCTTTCCATGCTGAACGTCCGAACCTGCGTCGTGCAT TCGTGCTCTCACCGCTGTGGCTTCGACCAGCCTAATGCAGCATGGTTGCC CTGCAGGCTTTTCCCTTCTCAAGTCTCGTCTCTAGCCCAAGCTTTTCTCT CACGCCCACCAGTGTAATGCGTGCACGCTGTTGCTTATCCCGCTGCAACA TTCTGTTAGTGACACCACATCTACATAGCCACAGCACCACCACCACCGCA ACCGCCGCTGCCCGCACAAGCTTGCCGAATCCTGCAAACACGCGGTCCGA TCCTAGCCTTTAATTTCAAATCCACGTCTGTGAACTGGTATCTCCTTTTT TTCAGGGACCGAAGCAAATAGTAGCTCATATTCTGCAGCAGTCGAGCGCT GTGTACGAGTGAGCGGAAGCGTGCGTGCGGTTTGTCGCTTAGATATGACC GGCGGAGTCCGGCGTAGTAAGTGACATTCTCCCGCCCTCCTGGTATGCGT GCTCTGCGTCGCCCGCGCAAGGTGCAACGAGATTATGGTGATACCTTTAA ATTTCAAGGTTAGCGAGGAGAACAGAGCGAAGGTGGAGCGTCACGTGAAA GGAATGACCTACAGGTGAGATCAAAACCTCGCTTGCGCGCCCATCTCTCG AAAACATTGGTAAAGTTTGCGGCCGCGAACACTTGTTTGACCTTCAGGGA ACAACAGAGTCACTTTCCGCTTGCAGTGCATGCAAGACCCTTCTGTGAGT CACGCTCCATGGCTTGTTCCCCTTCGCGCCCTTTCGCCCTGCTCCCCCGT CCTTGCTTTTGCTCGAGGTACACGAGTTGCACTGTCAAGCATCCTGCTAC CCCCCCGCCCCTCCCCTCCTCAATGATTGAAACATGTTTATGTCTCGAAG TTTTGGGTCGCGAATTTATTGTCAGTGCATACCGCCGTACCCCCTCCTCT CCCGGGAAGGGGTGCGCTTTTCCCCGCTCGCTACTTGCCTAGGTCATTTC ACCATCAGGGGGAGGGGGGGTTGGCAGCAACGCCCGGGTACACTCGAAGT TGACTTACCGTTCCCCTTGCTTCGTAAACATCAAGCGACCTGAAAGCAAG CAGTGTTCATAATTTTTGTGTCCTCGAAGCGGGAATGACTGTGCCGGCTA GCCTCCTGCGTGCTCCTTAATCACCAGGGACACCGCGATATAGCACTAGC TGCCGCCAGAGAAAAGTTAAGCGGAAGCTACAGATGCATCTGATTGGGGT CGTTGGAAATGAGTATATCTACTCCACCATGTTGGCCGCCTCGAAGGTGG GGGCAGTTCGCGTTGGATTTGGCAGTCCGTGTGCCAGTTTGGTGCTTCGG AACCGTCCACACCCTGTAAGACTTCACCTGGCAACTACATTTTGTAGTCG TGCGAGGCCGCCTACCTATCTTGCCCTTGAAGACTTTTTCTTTGTGTGAC GTTACTTCTGAGAGCCTTTTCCTCCGCTTGTCTTCGATCTCACGCTGTGC CACCTCTTGAATTATCTGTCAACTCTTTGTCGCCATTGCGCGCTCTCTCT CTCTGCACATCCTTTCGCCCCTCACTGTCTCTGAACCACCCCTCACCCCC CCCTCGTCTGCCCCCTCCCTCTTCTGCCGCCCCCCATACCGCTGTCTGTC TCCTCTTTTGTTAAAAAATTCGACAGAGAACCAATCGCGGACATGCTCTG GCTGGAGCTCCTGGGCGCGCTTAAGGCCAAGACCACCAAGCCGGAGGAGT GGGCCACGCCCCCCGAATACGTCACGGAGCCCAACATCATCGGCAAGATC GTGCCGGCGAGCCCGGCTGTCCAACTGGTGATGTCCTGCCTCGACGTCTC GGGGGCGGTTGACGCTGCTGCCGTCGCGGACTGGAAGTACCCTCTCGCCA TCACCCCGAGAGATCTGGAGCTCGGCGCGGTGCCCCTGAAGGAGGGGGCG TCGTTCGGGGAGGCGCACACCGTGCGCGTGCGACAGTAGTGAAGATAGCT TTCAGTTGTTTGGCGTCCATGTTTGAAATTTGTCGTTTTTTCCCCGTTTT TTTTTTTTTTTTTTTTTTTTCTGAAGTCGTGTGCGGCAGCAGTAGTGTTG CATACATTTGAAGGTTTTGGCTCGCTGACGTCTAGACTGGTACAACTGTG GTATTTTCCACAGCCCTCCCCGTTTCTGCAAGATTTTGCTTGTCAGTAGT CTTTACGGTCGAAGGATAGACATTCCGACAGTACTCGACCGTCCCTGTTG GGCCGGGGGAGGCGTGGAAGTGTTTCGTTGCACAACGCATGTGAACACAG GTGGAGCTACCGCATGCCGGTAGAGATAATGGGGAAGGCGTGGACGAAGA TACTTAGAGTCCGATTTTGCGTCGTAATTTCATGGATCGGATCGTTCTCC TGTTGGGTCTGCAGCCGGCGTTGCTCTCGTTTCCTTTCGAAATGCGGGAC TTGCATAACGGGGGACGTGCGACGTAATTATCTCAGCAGCAAAGTTAACA GTGCAATTTCAGTGGCATCGGCAGCCTGAGAGAAGCAGGAACCTGTACAG CAACGTGAACAACAGAGGTATCGACAAACCGGAATCCACTTTTGAGCGGG GCGACCTGACGAGGAGGTGTCGACCGAGCTGTGGAACCCCGGAGAAACGC ACACTTTGTCAGTACTGCTGGAGACGGAGGGCAACGTGCAATGCCATTTT CCCGCTTAACGGGATTGTCACAAATCCCATTCGACCCCTCAGACGCTCAT GTTGTCTACGAAGTACGTGACGCAGCCGTAGAATGGGTGCTTTGCACAAG CCGCCTCGGGCGAGGGTGGTGTTTTTCATCCTGCATCACAGTGTCCGCGG GAAGAGGCTTCGCCTCTCAGGATCGCGTGTGACAGCTATGGCTTCTTTTC TTCACAGGTGGGGTTTAAGGATCCGGATGTGCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig17:88894..96526-

>mRNA_P-fluviatile_contig17.2903.1 ID=mRNA_P-fluviatile_contig17.2903.1|Name=mRNA_P-fluviatile_contig17.2903.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1872bp|location=Sequence derived from alignment at P-fluviatile_contig17:88894..96526- (Porterinema fluviatile SAG_2381)
ATGTGGGCGAAGCACAGCAGTCCGATAATAATCCGCCGCGCGAAGCGCGC
GGCGATCGTTGCGGCCCCCGTCATCCTGGTGGGCGGCTGGGCGGCGAGCG
TGCTCAGTGAGAGGAGGAAGGCGCCAGCCGAGATCCGATTTTCGATCGGC
TCTGCGGATGTGGGCGAAGCACAGCAGTCCGATAATAATCCGCCGCGCGA
AGCGCGCGGCGATCGTTGCGGCCCCCGTCATCCTGGTGGGCGGCTGGGCG
GCGAGCGTGCTCAGTGAGAGGAGGAAGGCGCCAGCCGAGATCCGATTTTC
GATCGGCTCTGCGGATGACGTTTTAACGGAGCATCTCAAGACGGGGGACA
TCGTGCTCTTCAGCCGAAGATGGACGCAGATGTTGATGACGTTTTAACGG
AGCATCTCAAGACGGGGGACATCGTGCTCTTCAGCCGAAGATGGACGCAG
ATGTTGCCTGCCGGGGCCGCCCTGAGCACGTTCAAGAAGCGCGTGTTCGA
CACCCGGTTCGACCACACCGGGGTTATTGTCGCCGACCGGTTCGGCACGC
CGCACGTGGCGGAGGTCACCTACAAGGGCATCAAGCTACGGCGCTTCGAC
GAGCGGATACTCTGGTCAAACCTGCCGGGGCCGCCCTGAGCACGTTCAAG
AAGCGCGTGTTCGACACCCGGTTCGACCACACCGGGGTTATTGTCGCCGA
CCGGTTCGGCACGCCGCACGTGGCGGAGGTCACCTACAAGGGCATCAAGC
TACGGCGCTTCGACGAGCGGATACTCTGGTCAAAGTGCAACGAGATTATG
GTGATACCTTTAAATTTCAAGGTTAGCGAGGAGAACAGAGCGAAGGTGGA
GCGTCACGTGAAAGGAATGACCTACAGGTGCAACGAGATTATGGTGATAC
CTTTAAATTTCAAGGTTAGCGAGGAGAACAGAGCGAAGGTGGAGCGTCAC
GTGAAAGGAATGACCTACAGAGAACCAATCGCGGACATGCTCTGGCTGGA
GCTCCTGGGCGCGCTTAAGGCCAAGACCACCAAGCCGGAGGAGTGGGCCA
CGCCCCCCGAATACGTCACGGAGCCCAACATCATCGGCAAGATCGTGCCG
GCGAGCCCGGCTGTCCAACTGGTGATGTCCTGCCTCGACGTCTCGGGGGC
GGTTGACGCTGCTGCCGTCGCGGACTGGAAGTACCCTCTCGCCATCACCC
CGAGAGATCTGGAGCTCGGCGCGGTGCCCCTGAAGGAGGGGGCGTCGTTC
GGGGAGGCGCACACCGTGCGCGTGCGACAGAACCAATCGCGGACATGCTC
TGGCTGGAGCTCCTGGGCGCGCTTAAGGCCAAGACCACCAAGCCGGAGGA
GTGGGCCACGCCCCCCGAATACGTCACGGAGCCCAACATCATCGGCAAGA
TCGTGCCGGCGAGCCCGGCTGTCCAACTGGTGATGTCCTGCCTCGACGTC
TCGGGGGCGGTTGACGCTGCTGCCGTCGCGGACTGGAAGTACCCTCTCGC
CATCACCCCGAGAGATCTGGAGCTCGGCGCGGTGCCCCTGAAGGAGGGGG
CGTCGTTCGGGGAGGCGCACACCGTGCGCGTGCGACTTTTTTTTTTTTTT
CTGAAGTCGTGTGCGGCAGCAGTAGTGTTGCATACATTTGAAGGTTTTGG
CTCGCTGACGTCTAGACTGGTACAACTGTGGTATTTTCCACAGCCCTCCC
CGTTTCTGCAAGATTTTGCTTGTCAGTAGTTTTTTTTTTTTTTCTGAAGT
CGTGTGCGGCAGCAGTAGTGTTGCATACATTTGAAGGTTTTGGCTCGCTG
ACGTCTAGACTGGTACAACTGTGGTATTTTCCACAGCCCTCCCCGTTTCT
GCAAGATTTTGCTTGTCAGTAG
back to top