mRNA_P-fluviatile_contig17.3085.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig17.3085.1
Unique NamemRNA_P-fluviatile_contig17.3085.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig17.3085.1 vs. uniprot
Match: D7FHL9_ECTSI (Mitochondrial import inner membrane translocase subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHL9_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 6.490e-9
Identity = 31/36 (86.11%), Postives = 33/36 (91.67%), Query Frame = -1 
Query:  759 SLSSSEESCINATVFKYFDTSEFVLGRLMRSQAGEG 866
            SLSSSE+SCINATV KYFDTSEFVLGRLM+SQ G G
Sbjct:   88 SLSSSEQSCINATVLKYFDTSEFVLGRLMKSQQGGG 123
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BLAST of mRNA_P-fluviatile_contig17.3085.1 vs. uniprot
Match: K8YZ78_NANGC (Mitochondrial import inner membrane translocase subunit n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZ78_NANGC)

HSP 1 Score: 53.5 bits (127), Expect = 2.120e-5
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = -1 
Query:  756 SLSSSEESCINATVFKYFDTSEFVLGRLMRS-QAGEGG 866
            SLSS E+SCI ATV KY DTSEFVLGR+ RS Q G+GG
Sbjct:   92 SLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGG 129
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BLAST of mRNA_P-fluviatile_contig17.3085.1 vs. uniprot
Match: W7TJX5_9STRA (Mitochondrial protein translocase family n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJX5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 4.050e-5
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = -1 
Query:  756 SLSSSEESCINATVFKYFDTSEFVLGRLMRS-QAGEGG 866
            SLSS E+SCI ATV KY DTSEFVLGR+ RS Q G+GG
Sbjct:  128 SLSSGEQSCIQATVAKYLDTSEFVLGRVQRSAQRGQGG 165
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig17.3085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FHL9_ECTSI6.490e-986.11Mitochondrial import inner membrane translocase su... [more]
K8YZ78_NANGC2.120e-573.68Mitochondrial import inner membrane translocase su... [more]
W7TJX5_9STRA4.050e-573.68Mitochondrial protein translocase family n=1 Tax=N... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig17contigP-fluviatile_contig17:2711476..2712341 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size866
Cds size468
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.579929-UTR-P-fluviatile_contig17:2711475..27118731622815718.579929-UTR-P-fluviatile_contig17:2711475..2711873Porterinema fluviatile SAG_2381UTRP-fluviatile_contig17 2711476..2711873 +
1693563017.6609204-UTR-P-fluviatile_contig17:2711475..27118731693563017.6609204-UTR-P-fluviatile_contig17:2711475..2711873Porterinema fluviatile SAG_2381UTRP-fluviatile_contig17 2711476..2711873 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.5960445-CDS-P-fluviatile_contig17:2711873..27123411622815718.5960445-CDS-P-fluviatile_contig17:2711873..2712341Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2711874..2712341 +
1693563017.6683333-CDS-P-fluviatile_contig17:2711873..27123411693563017.6683333-CDS-P-fluviatile_contig17:2711873..2712341Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 2711874..2712341 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig17.3085.1prot_P-fluviatile_contig17.3085.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig17 2711874..2712341 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig17.3085.1

>prot_P-fluviatile_contig17.3085.1 ID=prot_P-fluviatile_contig17.3085.1|Name=mRNA_P-fluviatile_contig17.3085.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=156bp
MVNIVNIVDRRRLLGIFSSRRIASGSQQTSKQGLTPTAKSTTQRTNPQKR
RILRILERKAQSGFQRGTPTRGDAAVGMPAHPAQGLSAYNNEKAATSTRS
MKKTKADKIQKGRTREHLHPAFTRLRPHESPQDKFASVEVFEHRGVDATL
LRTGE*
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mRNA from alignment at P-fluviatile_contig17:2711476..2712341+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig17.3085.1 ID=mRNA_P-fluviatile_contig17.3085.1|Name=mRNA_P-fluviatile_contig17.3085.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=866bp|location=Sequence derived from alignment at P-fluviatile_contig17:2711476..2712341+ (Porterinema fluviatile SAG_2381)
AACACTCCGGAGTATACAACTGCGTCCTAGACGGCTTGTGTGTGATTCCG
CGCCCGTGGCTGTCCCTTTCCCTGCCAGTCTTCAACGAAAAATAAGGTTC
AAGCCACACAAACAACGTGAACGTTCGATTGCGTCGTGTTTGGGTCGTTC
ACTGAACCGAGCTGTCATGTCCGACCGTCGTCTACACGACATTTTCGCCA
TAGAACATTGCACGCGGTCGCTGGATTTGGCATGAAAGCGACATCCTCGC
ATGAAGCCCCGAAACAGCAGTGTTGAAAGCAAGTTCAAGAAGAGTGGAGC
GGGTGCGATGCAGATAAAAAAGCGTAACCCTTGTGCACGCAGCAGAATCC
ACGTGAGACTAGAAGTCGGGCCGGGAGAGCCCGAGAGTTTCGTCGCAAAT
GGTCAATATCGTCAACATCGTCGACAGGAGACGCTTACTTGGCATTTTTT
CATCGCGCCGGATTGCTTCCGGTTCACAGCAAACCTCCAAGCAAGGGCTG
ACACCGACGGCAAAGAGCACTACGCAAAGGACAAACCCTCAAAAACGAAG
AATCCTGCGCATACTTGAGCGGAAGGCGCAAAGCGGCTTCCAACGTGGAA
CGCCCACTCGTGGTGATGCGGCTGTCGGGATGCCCGCGCATCCCGCGCAA
GGCTTGTCAGCCTACAACAATGAAAAAGCTGCAACTAGTACTCGGAGTAT
GAAAAAAACCAAGGCGGATAAAATACAGAAGGGTAGAACAAGGGAGCACC
TACATCCCGCCTTCACCCGCTTGCGACCTCATGAGTCGCCCCAAGACAAA
TTCGCTAGTGTCGAAGTATTTGAACACCGTGGCGTTGATGCAACTCTCCT
CCGAACTGGAGAGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig17:2711476..2712341+

>mRNA_P-fluviatile_contig17.3085.1 ID=mRNA_P-fluviatile_contig17.3085.1|Name=mRNA_P-fluviatile_contig17.3085.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=936bp|location=Sequence derived from alignment at P-fluviatile_contig17:2711476..2712341+ (Porterinema fluviatile SAG_2381)
ATGGTCAATATCGTCAACATCGTCGACAGGAGACGCTTACTTGGCATTTT
TTCATCGCGCCGGATTGCTTCCGGTTCACAGCAAACCTCCAAGCAAGGGC
TGACACCGACGGCAAAGAGCACTACGCAAAGGACAAACCCTCAAAAACGA
AGAATCCTGCGCATACTTGAGCGGAAGGCGCAAAGCGGCTTCCAACGTGG
AACGCCCACTCGTGGTGATGCGGCTGTCGGGATGCCCGCGCATCCCGCGC
AAGGCTTGTCAGCCTACAACAATGAAAAAGCTGCAACTAGTACTCGGAGT
ATGAAAAAAACCAAGGCGGATAAAATACAGAAGGGTAGAACAAGGGAGCA
CCTACATCCCGCCTTCACCCGCTTGCGACCTCATGAGTCGCCCCAAGACA
AATTCGCTAGTGTCGAAGTATTTGAACACCGTGGCGTTGATGCAACTCTC
CTCCGAACTGGAGAGTGAATGGTCAATATCGTCAACATCGTCGACAGGAG
ACGCTTACTTGGCATTTTTTCATCGCGCCGGATTGCTTCCGGTTCACAGC
AAACCTCCAAGCAAGGGCTGACACCGACGGCAAAGAGCACTACGCAAAGG
ACAAACCCTCAAAAACGAAGAATCCTGCGCATACTTGAGCGGAAGGCGCA
AAGCGGCTTCCAACGTGGAACGCCCACTCGTGGTGATGCGGCTGTCGGGA
TGCCCGCGCATCCCGCGCAAGGCTTGTCAGCCTACAACAATGAAAAAGCT
GCAACTAGTACTCGGAGTATGAAAAAAACCAAGGCGGATAAAATACAGAA
GGGTAGAACAAGGGAGCACCTACATCCCGCCTTCACCCGCTTGCGACCTC
ATGAGTCGCCCCAAGACAAATTCGCTAGTGTCGAAGTATTTGAACACCGT
GGCGTTGATGCAACTCTCCTCCGAACTGGAGAGTGA
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