mRNA_P-fluviatile_contig16.2875.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2875.1
Unique NamemRNA_P-fluviatile_contig16.2875.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig16.2875.1 vs. uniprot
Match: D7FLF6_ECTSI (Putative far-red impaired response protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF6_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 9.140e-8
Identity = 43/111 (38.74%), Postives = 58/111 (52.25%), Query Frame = 2 
Query:  167 YDVIKNGRTLRRNSSFRVVRKRVDNIAHDLALASRMDNDPHDTMQGAQRADLSGECPRRKRPEEIHGADHGRVQAGWSQQLRNETMAEMFASSACDTIIATLVEGRESVQF 499
            + V+K GR LRRNS+FR VR + + IA +L LAS        TMQ  ++  L          + +        + G S+  + E  AEM ASSA DT I T  EGR+S+QF
Sbjct:  266 FSVLKKGRVLRRNSTFRQVRAKCEQIAGELRLAS--------TMQATKQTSLGKGYVENDVKKSMEKVMTAYAEVGASKYAKEEIWAEMLASSAYDTSIVT--EGRDSMQF 366
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2875.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLF6_ECTSI9.140e-838.74Putative far-red impaired response protein n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:2731644..2733153 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue5.6e-08
Seed eggNOG ortholog2880.D7FLF6
EggNOG OGs2CMGX@1,2QQB8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size499
Cds size348
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2875.1prot_P-fluviatile_contig16.2875.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 2731939..2733153 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.436311-UTR-P-fluviatile_contig16:2731643..27317261622815713.436311-UTR-P-fluviatile_contig16:2731643..2731726Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2731644..2731726 +
1693563010.476476-UTR-P-fluviatile_contig16:2731643..27317261693563010.476476-UTR-P-fluviatile_contig16:2731643..2731726Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2731644..2731726 +
1622815713.4469094-UTR-P-fluviatile_contig16:2731870..27319381622815713.4469094-UTR-P-fluviatile_contig16:2731870..2731938Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2731871..2731938 +
1693563010.4881475-UTR-P-fluviatile_contig16:2731870..27319381693563010.4881475-UTR-P-fluviatile_contig16:2731870..2731938Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2731871..2731938 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.460441-CDS-P-fluviatile_contig16:2731938..27319581622815713.460441-CDS-P-fluviatile_contig16:2731938..2731958Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2731939..2731958 +
1693563010.4990773-CDS-P-fluviatile_contig16:2731938..27319581693563010.4990773-CDS-P-fluviatile_contig16:2731938..2731958Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2731939..2731958 +
1622815713.470865-CDS-P-fluviatile_contig16:2732424..27325261622815713.470865-CDS-P-fluviatile_contig16:2732424..2732526Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2732425..2732526 +
1693563010.5174177-CDS-P-fluviatile_contig16:2732424..27325261693563010.5174177-CDS-P-fluviatile_contig16:2732424..2732526Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2732425..2732526 +
1622815713.482845-CDS-P-fluviatile_contig16:2732746..27328881622815713.482845-CDS-P-fluviatile_contig16:2732746..2732888Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2732747..2732888 +
1693563010.5280838-CDS-P-fluviatile_contig16:2732746..27328881693563010.5280838-CDS-P-fluviatile_contig16:2732746..2732888Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2732747..2732888 +
1622815713.4927893-CDS-P-fluviatile_contig16:2733069..27331531622815713.4927893-CDS-P-fluviatile_contig16:2733069..2733153Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2733070..2733153 +
1693563010.5379798-CDS-P-fluviatile_contig16:2733069..27331531693563010.5379798-CDS-P-fluviatile_contig16:2733069..2733153Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2733070..2733153 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2875.1

>prot_P-fluviatile_contig16.2875.1 ID=prot_P-fluviatile_contig16.2875.1|Name=mRNA_P-fluviatile_contig16.2875.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=116bp
MNGYLYDVIKNGRTLRRNSSFRVVRKRVDNIAHDLALASRMDNDPHDTMQ
GAQRADLSGECPRRKRPEEIHGADHGRVQAGWSQQLRNETMAEMFASSAC
DTIIATLVEGRESVQF
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mRNA from alignment at P-fluviatile_contig16:2731644..2733153+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2875.1 ID=mRNA_P-fluviatile_contig16.2875.1|Name=mRNA_P-fluviatile_contig16.2875.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1510bp|location=Sequence derived from alignment at P-fluviatile_contig16:2731644..2733153+ (Porterinema fluviatile SAG_2381)
GCTGCATGGGGGCCTTGCAAAGGAAGAGATCCACAGAGCTTCTCCGGTGG
TACATTGCGGCATCGTTCGCATCGAAAAAAAAGGTGAGAACACTGACCAG
CTTGCAGAAACCGTACGTCTTCGCGCTTTCGTGACAAATCAATGTGTCCT
CATTTCGTTCGTCCTTGCCCACATCATTCCTTACCAGCAATATTGTTCCG
CTTTTGCTATCCCCTCCTCGAGAGCAGGCCTTTGAAGGTGTCTGTCTGGG
AACGCGTCGAGGATAATAAGGGCACGTCGTGTGAGAAATACGTCAATGAA
TGGCTACCTGTACGAGTGAGTGCATTTATATCTGCCTTCCTTTTTTAAAT
ACAACAGCTAAAAAATCTGCGACCTTTCGCACGCGGTACAGCGATGAGTT
GGGTTGGTTTGCGTTGGAGTTTCACTGCTGTTGCGGTTGGGTAGGGTATG
GTAGGGTAGGGTGGGGTAGTGTTGGGTTAGAATGGATAGAGCTGGGTTGC
TTGCGTAGTGTTGGGTTGGAAAGGAGAACTGTGTGCAGTGTACTCGGCAG
ACTTACCCACCTTCGTATTTTTTGCCACACAACCTGAATTTCCTTGAGCG
TGTGGTGGTTGTTCTGGCGGCACCGATTGGGATATTTACTAAAATTAAAC
TCAATTAACTTGTGCACACTCCGTGTCGCGCTTGAAAGCATCGGGAACGG
TGGGCGCGTTGCTTTCACGCGACTGCCATGACTTTAGAAATAAATGACAT
CCTCCCAACGACGTGTGGAGGGCATCTTCAGCGTTATCAAGAACGGGCGC
ACGTTGAGAAGAAACTCGTCCTTTCGCGTTGTGAGAAAGAGGGTGGACAA
CATTGCCCATGACCTCGCCCTGGCATCAAGAATGTGAGTTGGCCGGGGTG
GGCATTGTTTCTTCGCTCTGCCACCCGTACTTTGTCAATGAGTGCACCCG
ATACCACGCGTAGTTTTTCCTCCCTCGGCAGTGAAAATATCAAAAAAATC
AGAAGGCGTGCCCTGTCGGTGACGGCTTGGAATTTGTTTCCATGTCTAGA
TATTGTGACCATGTTAAACGGCCGGTCTTTCACTGCTGATATGTGGTGGG
GAGGGACAACGATCCCCACGACACAATGCAGGGAGCGCAGCGAGCAGATC
TCTCTGGGGAATGCCCACGTCGAAAACGACCTGAAGAAATCCATGGAGCC
GATCATGGACGAGTACAAGCGGGTTGGAGCCAGCAACTACGCAACGTAGG
TAAAGCGGTTACCAACATATCATAGTTGAAGAGGAAGACATAAAGTATCC
CCGAAGTATCACCACCGCATGTCCATCCGTTTCGTTTCGCGCACCCTCTG
ATTCCTCCCTTGCACCATCACCCTGTCCTTGCTTGTGCTGTCCTCTGTTG
TATCTTGTGCGGCTTCTCTCCAACAGGAGACTATGGCCGAAATGTTTGCG
AGCTCGGCGTGCGACACTATTATTGCCACTCTTGTTGAGGGACGTGAGTC
GGTGCAGTTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:2731644..2733153+

>mRNA_P-fluviatile_contig16.2875.1 ID=mRNA_P-fluviatile_contig16.2875.1|Name=mRNA_P-fluviatile_contig16.2875.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=696bp|location=Sequence derived from alignment at P-fluviatile_contig16:2731644..2733153+ (Porterinema fluviatile SAG_2381)
ATGAATGGCTACCTGTACGAATGAATGGCTACCTGTACGACGTTATCAAG
AACGGGCGCACGTTGAGAAGAAACTCGTCCTTTCGCGTTGTGAGAAAGAG
GGTGGACAACATTGCCCATGACCTCGCCCTGGCATCAAGAATCGTTATCA
AGAACGGGCGCACGTTGAGAAGAAACTCGTCCTTTCGCGTTGTGAGAAAG
AGGGTGGACAACATTGCCCATGACCTCGCCCTGGCATCAAGAATGGACAA
CGATCCCCACGACACAATGCAGGGAGCGCAGCGAGCAGATCTCTCTGGGG
AATGCCCACGTCGAAAACGACCTGAAGAAATCCATGGAGCCGATCATGGA
CGAGTACAAGCGGGTTGGAGCCAGCAACTACGCAACGGACAACGATCCCC
ACGACACAATGCAGGGAGCGCAGCGAGCAGATCTCTCTGGGGAATGCCCA
CGTCGAAAACGACCTGAAGAAATCCATGGAGCCGATCATGGACGAGTACA
AGCGGGTTGGAGCCAGCAACTACGCAACGAGACTATGGCCGAAATGTTTG
CGAGCTCGGCGTGCGACACTATTATTGCCACTCTTGTTGAGGGACGTGAG
TCGGTGCAGTTCGAGACTATGGCCGAAATGTTTGCGAGCTCGGCGTGCGA
CACTATTATTGCCACTCTTGTTGAGGGACGTGAGTCGGTGCAGTTC
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