mRNA_P-fluviatile_contig1.197.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.197.1
Unique NamemRNA_P-fluviatile_contig1.197.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig1.197.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 318 bits (815), Expect = 9.710e-102
Identity = 184/301 (61.13%), Postives = 223/301 (74.09%), Query Frame = 1
Query:   46 MTTRTIKISFQGASHDVDLTAPFTLAGLQQAIASKFAVDLPPRAGLDEAAKGSDLCFTYKDPEGDDIVFDKDSELSLALRLCPSSLEISAAHKET-PSSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNDGLTQQQQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESPPVAV-ATASETADD-------KQVIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLVAEKKMANASGGAD 921
            MTT +IKI+FQG S DV++  P TLA LQ AIA  F  +LP R+   EAAK +DL FTYKDP+GDDIVFDKDSEL+LA+RLCP SLEISAA KE  P++KP+PE RLY++AARNLREYNGVPSMTP KL KTL+FL+L P+RLVKQGLAP+VLLARM AE   N  +++       PLGDG+N E LAE+V AGME++SV+DDK+E  DGFVSVE    +     +E  +D       K +IHKAFIA GI+LRPREV+PLL+AL V P RL KLG V+ K L  +L AEKK+A+   G D
Sbjct:    1 MTTSSIKINFQGTSRDVNVPVPVTLASLQAAIAGAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPGSLEISAAGKENKPANKPDPEARLYKIAARNLREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKV------PLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSVEPADTSSPGNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAMLQAEKKVAHKRRGHD 295          
BLAST of mRNA_P-fluviatile_contig1.197.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 318 bits (815), Expect = 1.420e-101
Identity = 187/314 (59.55%), Postives = 227/314 (72.29%), Query Frame = 1
Query:   19 NNKDDNKDMMTTRTIKISFQGASHDVDLTAPFTLAGLQQAIASKFAVDLPPRAGLDEAAKGSDLCFTYKDPEGDDIVFDKDSELSLALRLCPSSLEISAAHKET-PSSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNDGLTQQQQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESP------PVAVATASETADD------------KQVIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLVAEKKMAN 903
            NN+ +N   MTT +IKI+FQGAS DV++ AP +LA LQ AIA+ F  +LP R+   EAAK +DL FTYKDP+GDDIVFDKDSEL LA+RLCPSSLEISA  KE+ P+ KP+PE RLY++AARNLREYNGVPSMT  KL KTL+FLKL P+RLVKQGLAP+VLLARM AE   N  +++       PLGDG+N E LAE+V AGME++SV+DDK+E  DGFVS ES       P+   T++   D+            K +IHKAFI  GI+LRPREV+PLL+AL V P RL KLG VD K L  +L AEKK A+
Sbjct:   10 NNRYNNDKTMTTPSIKINFQGASRDVNVPAPVSLASLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISATLKESEPAKKPDPEARLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKV------PLGDGKNNEDLAESVAAGMELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLRAEKKAAH 317          
BLAST of mRNA_P-fluviatile_contig1.197.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 313 bits (802), Expect = 1.330e-100
Identity = 183/310 (59.03%), Postives = 225/310 (72.58%), Query Frame = 1
Query:   19 NNKDDNKDMMTTRTIKISFQGASHDVDLTAPFTLAGLQQAIASKFAVDLPPRAGLDEAAKGSDLCFTYKDPEGDDIVFDKDSELSLALRLCPSSLEISAAHKETPSSK-PNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNDGLTQQQQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESPPVAVATASETADDKQ----------VIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLVAEKKMANASGG 915
            NN+D+N + MTT +IKI+FQGAS DV++ AP TLA LQ  IA+ F  +LP R+   EAAK +DL FTYKDP+GDDIVFDKDSEL LA+RLCP SLEISAA KE  +++ P+ E RLY++AARNLREYNGVPSMTP KL KTL+FLKL P+RLVKQGLAP+ LL RM AE   N  +++       PLGDG+N E LAE+V AGME++S++DDK+E  DGFVSVE  P   ++     ++K           +IHKAFIA GI+LRPREV+PLL+AL V P RL KLG VD K L  +L AEKK A+   G
Sbjct:    8 NNRDNNDNTMTTSSIKINFQGASRDVNVPAPVTLASLQAVIAAAFDAELPVRSPGGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAMRLCPGSLEISAAGKEKKAAEMPDSEARLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKV------PLGDGKNNEDLAESVAAGMELMSLEDDKKEWNDGFVSVE--PADTSSPDNDNEEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAMLQAEKKTAHKRHG 309          
BLAST of mRNA_P-fluviatile_contig1.197.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 313 bits (801), Expect = 2.120e-100
Identity = 187/311 (60.13%), Postives = 227/311 (72.99%), Query Frame = 1
Query:   19 NNKDDNKDMMTTRTIKISFQGASHDVDLTAPFTLAGLQQAIASKFAVDLPPRAGLDEAAKGSDLCFTYKDPEGDDIVFDKDSELSLALRLCPSSLEISAAHKETPSSK-PNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNDGLTQQQQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESPPVAVATASETADDKQ-----------VIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLVAEKKMANASGG 915
            NN+ +N   MTT +IKI+FQGAS DV + AP TLA LQ AIA+ F V+LP R+   EAAK +DL FTYKDP+GDDIVFDKDSEL+LALRLCP SLEISAA KE  ++K P+ E  LY++AARNLREYNGVPSMTP KL KTL+FLKL P+RLVKQGLAP++LLARM AE   N  L++ +      LGDG+N E LAE V AGME +SV+DDK+E  DGFVSVE    A  ++S+  ++++           +IHKAFIA GI+LRPREV+PLL+AL V P RL KLG VD K L  +L AEKK A+   G
Sbjct:   19 NNRYNNDKTMTTSSIKINFQGASRDVSVPAPATLARLQAAIAAVFEVELPVRSLTGEAAKDTDLSFTYKDPDGDDIVFDKDSELNLALRLCPGSLEISAAGKENKATKMPDSEETLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVR------LGDGKNNEDLAEWVAAGMEFMSVEDDKKEWNDGFVSVEP---AETSSSDNGNEEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAMLQAEKKAAHKRHG 320          
BLAST of mRNA_P-fluviatile_contig1.197.1 vs. uniprot
Match: A0A6H5JPU3_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPU3_9PHAE)

HSP 1 Score: 310 bits (795), Expect = 1.810e-99
Identity = 180/298 (60.40%), Postives = 220/298 (73.83%), Query Frame = 1
Query:   46 MTTRTIKISFQGASHDVDLTAPFTLAGLQQAIASKFAVDLPPRAGLDEAAKGSDLCFTYKDPEGDDIVFDKDSELSLALRLCPSSLEISAAHKETPSSK-PNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNDGLTQQQQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESPPVAV-ATASETADD------KQVIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLVAEKKMANASGG 915
            MTT +IKI+FQGAS DV++  P  LA LQ AIA+ F V+LP R+   EAA  +DL FTYKDP+GDDIVFDK+SEL LALRLCP SLEISAA KE  +++ P+ E +LY++AARNLREYNGVPSMTP KL KTL+FLKL P+RLVKQGLAP+VLLARM AE   N  +++       PLGDG+N E LAE+V AGME++SV+D K+E  DGFVSVE   ++  A  +E  +D      K +IHKAFIA GI+LRPREV+PLL+AL V+P RL KLG V  K L  +L AEKK A+   G
Sbjct:   19 MTTSSIKITFQGASRDVNVRVPVMLASLQAAIAAAFDVELPARSSAGEAANDTDLSFTYKDPDGDDIVFDKESELQLALRLCPGSLEISAAGKENKATRMPDSEEKLYKIAARNLREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKV------PLGDGKNNEDLAESVAAGMELMSVEDGKKEWNDGFVSVEPAEISFPANDNEEKNDAAPEAKKNLIHKAFIAGGIQLRPREVRPLLVALDVLPYRLAKLGLVGGKDLRAMLRAEKKTAHKRHG 310          
BLAST of mRNA_P-fluviatile_contig1.197.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 309 bits (792), Expect = 8.370e-98
Identity = 185/319 (57.99%), Postives = 224/319 (70.22%), Query Frame = 1
Query:   46 MTTRTIKISFQGASHDVDLTAPFTLAGLQQAIASKFAVDLPPRAGLDEAAKGSDLCFTYKDPEGDDIVFDKDSELSLALRLCPSSLEISAAHKET-PSSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNDGLTQQQQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVE------SPPVAVATAS------ETADD------KQVIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLVAEKKMANASGGADGNRIPNAA 945
            MTT +IKI+FQG S +V++ APFTLA LQ  IA+ F  +LP R+   EA K +DL FTYKDP+GDDIVFDKDSEL+LA+RLCP SLEISAA KE  P +KP+PE RLY++AARNLREYNGVPSMT  KL KTL+FLKL PRRLVKQGLAP+ LLARM AE   N  +++        LGDGEN E LAE+V AGME++SV+DDK+E  +GFVS +      + P+   T+S      E  DD      K +IH AFIA GI+LRPREV+PLL+AL V P RL KLG V+ K+L  +L AE K A+   G D N    AA
Sbjct:    1 MTTSSIKINFQGTSRNVNVQAPFTLASLQATIAAAFDAELPVRSPAGEATKDTDLSFTYKDPDGDDIVFDKDSELNLAVRLCPDSLEISAAGKENKPDNKPDPEGRLYKIAARNLREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKV------TLGDGENNEDLAESVAAGMELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDAAPEVKKNLIHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAMLQAETKAAHKRHGHDNNNDDTAA 313          
BLAST of mRNA_P-fluviatile_contig1.197.1 vs. uniprot
Match: D8LN82_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN82_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 4.350e-91
Identity = 173/286 (60.49%), Postives = 209/286 (73.08%), Query Frame = 1
Query:   19 NNKDDNKDMMTTRTIKISFQGASHDVDLTAPFTLAGLQQAIASKFAVDLPPRAGLDEAAKGSDLCFTYKDPEGDDIVFDKDSELSLALRLCPSSLEISAAHKET-PSSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNDGLTQQQQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVES--PPVAVATASETA----------DD------KQVIHKAFIAAGIRLRPREVQPLLLALGV 819
            NN D+N  MMTT +IKI+FQGAS DV++ AP TL  LQ AIA+ F  +LP R+   EAAK +DL FTYKDP+GDDIVFDKDSEL LA+RLCPSSLEISAA KE+ P++KP+PE RLY++AARNLREYNGVPSMTP KL KTL+FLKL P+RLVKQGLAP+VLLARM AE   N  +++       PLGDG+N E LA++V AGME++SV+D K+E  DGFVS ES  P  A    +ET+          DD      K +IHKAFIA GI+LRPRE   LLL + +
Sbjct:    7 NNCDNNDKMMTTSSIKINFQGASRDVNVPAPVTLDSLQAAIAAAFDAELPVRSPAGEAAKDTDLSFTYKDPDGDDIVFDKDSELKLAVRLCPSSLEISAALKESKPANKPDPEARLYKIAARNLREYNGVPSMTPPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKV------PLGDGKNNEDLADSVAAGMELMSVED-KKEWNDGFVSAESDAPAAAAPITAETSSPDNDKEEENDDAAPEVKKNLIHKAFIAGGIQLRPRE--GLLLGVSI 283          
BLAST of mRNA_P-fluviatile_contig1.197.1 vs. uniprot
Match: A0A6H5JCG1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG1_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.590e-11
Identity = 60/173 (34.68%), Postives = 90/173 (52.02%), Query Frame = 1
Query:  334 SSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLLARMNAEGNKNDGLTQQQQEQQQPLGDGENEEGLAEAVTAGMEMVSVKDDKQEPGDGFVSVESPPVAVATASETADDKQVIHKAFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYV 852
            + +PNP   +++ AARNLREY+GVPS+TP  L  T+  L+L P RLV QGLAP++LL     +GN   G+     +     G  E EE  A    +  ++ S   D  + G+  +  ++     +   E    K  I   F+A G++LRPRE +PLL  + ++    V L  V
Sbjct:   34 TGEPNP--LMFKAAARNLREYHGVPSITPGGLETTMVLLELRPARLVAQGLAPKILL-----KGNSTAGVDADSTD---GSGGFEAEEEQANNQFS-HDLSSNSSDGGDTGNDNIVTQN-----SIGFEARASKHPIQAVFVAVGVQLRPRETRPLLRGVVLLTSSTVALEVV 190          
BLAST of mRNA_P-fluviatile_contig1.197.1 vs. uniprot
Match: A0A6H5KI70_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI70_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 2.720e-7
Identity = 35/69 (50.72%), Postives = 44/69 (63.77%), Query Frame = 1
Query:  301 LEISAAHKETPSSKPNPERR--LYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVL 501
            + ++A     PS K   E    LY+ AARNLREY+GVPSMT   L KT+  L+L P RLV QGLAP+ +
Sbjct:   31 INMTACVTNKPSCKLTGESNPLLYKAAARNLREYHGVPSMTAGGLEKTMVLLQLRPGRLVAQGLAPKXI 99          
BLAST of mRNA_P-fluviatile_contig1.197.1 vs. uniprot
Match: D8LC36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC36_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 1.240e-6
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1
Query:  361 LYQVAARNLREYNGVPSMTPAKLPKTLSFLKLGPRRLVKQGLAPRVLL 504
            +YQ AARNLRE+  VPS+T   L KT++ L+L P RLV QGLAPR LL
Sbjct:   46 VYQAAARNLREFRRVPSLTAGGLEKTMALLQLRPARLVAQGLAPRDLL 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.197.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LN68_ECTSI9.710e-10261.13PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ17_9PHAE1.420e-10159.55PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN66_ECTSI1.330e-10059.03PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE2.120e-10060.13PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JPU3_9PHAE1.810e-9960.40PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KB69_9PHAE8.370e-9857.99PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN82_ECTSI4.350e-9160.49PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JCG1_9PHAE4.590e-1134.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI70_9PHAE2.720e-750.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC36_ECTSI1.240e-662.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:2521184..2522908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1105
Cds size1104
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815303.3651676-CDS-P-fluviatile_contig1:2521184..25219581622815303.3651676-CDS-P-fluviatile_contig1:2521184..2521958Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2521185..2521958 -
1693561449.1295693-CDS-P-fluviatile_contig1:2521184..25219581693561449.1295693-CDS-P-fluviatile_contig1:2521184..2521958Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2521185..2521958 -
1622815303.3765945-CDS-P-fluviatile_contig1:2522578..25229081622815303.3765945-CDS-P-fluviatile_contig1:2522578..2522908Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2522579..2522908 -
1693561449.1369443-CDS-P-fluviatile_contig1:2522578..25229081693561449.1369443-CDS-P-fluviatile_contig1:2522578..2522908Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 2522579..2522908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.197.1prot_P-fluviatile_contig1.197.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 2521185..2522908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.197.1

>prot_P-fluviatile_contig1.197.1 ID=prot_P-fluviatile_contig1.197.1|Name=mRNA_P-fluviatile_contig1.197.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=368bp
PNKDLTNNKDDNKDMMTTRTIKISFQGASHDVDLTAPFTLAGLQQAIASK
FAVDLPPRAGLDEAAKGSDLCFTYKDPEGDDIVFDKDSELSLALRLCPSS
LEISAAHKETPSSKPNPERRLYQVAARNLREYNGVPSMTPAKLPKTLSFL
KLGPRRLVKQGLAPRVLLARMNAEGNKNDGLTQQQQEQQQPLGDGENEEG
LAEAVTAGMEMVSVKDDKQEPGDGFVSVESPPVAVATASETADDKQVIHK
AFIAAGIRLRPREVQPLLLALGVVPRRLVKLGYVDKKHLPRLLVAEKKMA
NASGGADGNRIPNAAANLQQKRQQLCQQRQRQLQIRQRLRQQRQQQRRMA
RGGGGRCGLAGPVIQRGC
back to top

mRNA from alignment at P-fluviatile_contig1:2521184..2522908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.197.1 ID=mRNA_P-fluviatile_contig1.197.1|Name=mRNA_P-fluviatile_contig1.197.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1725bp|location=Sequence derived from alignment at P-fluviatile_contig1:2521184..2522908- (Porterinema fluviatile SAG_2381)
CCAAACAAGGACCTAACAAATAACAAAGACGACAACAAAGACATGATGAC CACTCGCACGATCAAGATCAGCTTCCAGGGCGCCTCCCACGACGTCGACC TCACGGCCCCGTTCACCCTCGCCGGCCTGCAGCAAGCCATCGCCTCCAAG TTCGCTGTGGACCTGCCCCCGAGGGCCGGTCTGGACGAGGCCGCCAAGGG CAGCGACCTGTGCTTCACCTACAAGGACCCCGAGGGAGATGATATCGTGT TCGACAAGGATTCCGAGCTCAGCCTGGCGCTCCGCCTCTGCCCCAGCTCG CTCGAGATCTCCGCTGCCCACAAGGAAACGGTGAGGACAGACATCGGAGG ATTTGTTATGTGCAGGAACGCTAGCGATGAGCGCGACCGAGGGGGACAAG GCTTGGGTGCTCGACCAATACTGGCATTGTGCGTAGAGCCTCTGATGCGC GTAGAGACAGACAGAGGTGAACAAAGAGAGACCACCCCGTTTTTGGATGA TGGTGTGACCGACAATCCTGACGAGGTTTCCATTGATTGATTGATACTTG TCTGCATGGCGAAACAGGCGGTCTCCCCCGAACACCCCGCCGCACCATTG CGAGGGAATTCTCACAGCCGTGGTAAACCTCAGCAAGGCCTCCGTTTTAG TCGTTTTGGTAGAATTGACGTCATTCGTTCCTCTCCATCTGTGCGAGGGA GAGAGAAACCGATAGTCGGTTGATTTACCTTTATTTTACCCGGCGGAAGG ACTCACTCTTGACAACAACACCGCCGTCGACGCGCTCCGCTCGTTCGATT GGCTGATCGGTCTGCTCCCAAATTTACCATCACGCCGAAGAACGACGCTT CATCATTCTCCCCGCATGCCCCTCCCTGTTTCCTGAACCAAGCCCCGCCC TCTCCTCGTTTCTCATCCCTCTGTTTCCCTCTCCCGCCTTCTCCCTCCAG CCCTCCAGCAAGCCGAACCCCGAACGCAGATTGTACCAGGTTGCCGCCCG CAACCTCCGCGAGTACAACGGCGTGCCGTCGATGACCCCGGCCAAGCTAC CGAAGACTCTGTCGTTCCTCAAGCTGGGCCCGCGCCGCCTCGTGAAGCAG GGCCTGGCCCCCAGGGTGCTGCTGGCCCGCATGAACGCCGAAGGCAACAA GAACGATGGCCTGACTCAGCAGCAGCAGGAGCAGCAACAACCTCTTGGCG ACGGCGAAAACGAGGAGGGCCTCGCCGAAGCGGTCACCGCCGGTATGGAG ATGGTGAGCGTGAAGGATGACAAGCAGGAGCCGGGAGACGGTTTCGTCTC TGTCGAGTCCCCCCCCGTCGCCGTGGCCACCGCTTCCGAGACTGCCGATG ACAAGCAGGTCATCCACAAGGCCTTCATCGCCGCCGGTATTCGGCTCCGC CCCCGCGAGGTGCAGCCCTTGCTTCTGGCCCTGGGCGTCGTCCCTCGCCG CCTCGTGAAGCTCGGCTACGTCGACAAGAAGCACCTGCCCCGCCTGCTCG TCGCGGAGAAGAAGATGGCCAACGCCAGTGGTGGCGCTGACGGTAACAGA ATCCCGAACGCCGCCGCAAACCTGCAGCAGAAGCGGCAGCAGCTTTGCCA GCAGCGGCAGCGGCAGCTGCAGATCCGGCAGCGGCTTCGGCAGCAGCGGC AGCAGCAGCGGCGTATGGCCCGCGGAGGTGGCGGCCGCTGCGGCCTCGCT GGGCCCGTGATACAGAGGGGCTGCG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig1:2521184..2522908-

>mRNA_P-fluviatile_contig1.197.1 ID=mRNA_P-fluviatile_contig1.197.1|Name=mRNA_P-fluviatile_contig1.197.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2208bp|location=Sequence derived from alignment at P-fluviatile_contig1:2521184..2522908- (Porterinema fluviatile SAG_2381)
CCAAACAAGGACCTAACAAATAACAAAGACGACAACAAAGACATGATGAC
CACTCGCACGATCAAGATCAGCTTCCAGGGCGCCTCCCACGACGTCGACC
TCACGGCCCCGTTCACCCTCGCCGGCCTGCAGCAAGCCATCGCCTCCAAG
TTCGCTGTGGACCTGCCCCCGAGGGCCGGTCTGGACGAGGCCGCCAAGGG
CAGCGACCTGTGCTTCACCTACAAGGACCCCGAGGGAGATGATATCGTGT
TCGACAAGGATTCCGAGCTCAGCCTGGCGCTCCGCCTCTGCCCCAGCTCG
CTCGAGATCTCCGCTGCCCACAAGGAAACGCCAAACAAGGACCTAACAAA
TAACAAAGACGACAACAAAGACATGATGACCACTCGCACGATCAAGATCA
GCTTCCAGGGCGCCTCCCACGACGTCGACCTCACGGCCCCGTTCACCCTC
GCCGGCCTGCAGCAAGCCATCGCCTCCAAGTTCGCTGTGGACCTGCCCCC
GAGGGCCGGTCTGGACGAGGCCGCCAAGGGCAGCGACCTGTGCTTCACCT
ACAAGGACCCCGAGGGAGATGATATCGTGTTCGACAAGGATTCCGAGCTC
AGCCTGGCGCTCCGCCTCTGCCCCAGCTCGCTCGAGATCTCCGCTGCCCA
CAAGGAAACGCCCTCCAGCAAGCCGAACCCCGAACGCAGATTGTACCAGG
TTGCCGCCCGCAACCTCCGCGAGTACAACGGCGTGCCGTCGATGACCCCG
GCCAAGCTACCGAAGACTCTGTCGTTCCTCAAGCTGGGCCCGCGCCGCCT
CGTGAAGCAGGGCCTGGCCCCCAGGGTGCTGCTGGCCCGCATGAACGCCG
AAGGCAACAAGAACGATGGCCTGACTCAGCAGCAGCAGGAGCAGCAACAA
CCTCTTGGCGACGGCGAAAACGAGGAGGGCCTCGCCGAAGCGGTCACCGC
CGGTATGGAGATGGTGAGCGTGAAGGATGACAAGCAGGAGCCGGGAGACG
GTTTCGTCTCTGTCGAGTCCCCCCCCGTCGCCGTGGCCACCGCTTCCGAG
ACTGCCGATGACAAGCAGGTCATCCACAAGGCCTTCATCGCCGCCGGTAT
TCGGCTCCGCCCCCGCGAGGTGCAGCCCTTGCTTCTGGCCCTGGGCGTCG
TCCCTCGCCGCCTCGTGAAGCTCGGCTACGTCGACAAGAAGCACCTGCCC
CGCCTGCTCGTCGCGGAGAAGAAGATGGCCAACGCCAGTGGTGGCGCTGA
CGGTAACAGAATCCCGAACGCCGCCGCAAACCTGCAGCAGAAGCGGCAGC
AGCTTTGCCAGCAGCGGCAGCGGCAGCTGCAGATCCGGCAGCGGCTTCGG
CAGCAGCGGCAGCAGCAGCGGCGTATGGCCCGCGGAGGTGGCGGCCGCTG
CGGCCTCGCTGGGCCCGTGATACAGAGGGGCTGCCCCTCCAGCAAGCCGA
ACCCCGAACGCAGATTGTACCAGGTTGCCGCCCGCAACCTCCGCGAGTAC
AACGGCGTGCCGTCGATGACCCCGGCCAAGCTACCGAAGACTCTGTCGTT
CCTCAAGCTGGGCCCGCGCCGCCTCGTGAAGCAGGGCCTGGCCCCCAGGG
TGCTGCTGGCCCGCATGAACGCCGAAGGCAACAAGAACGATGGCCTGACT
CAGCAGCAGCAGGAGCAGCAACAACCTCTTGGCGACGGCGAAAACGAGGA
GGGCCTCGCCGAAGCGGTCACCGCCGGTATGGAGATGGTGAGCGTGAAGG
ATGACAAGCAGGAGCCGGGAGACGGTTTCGTCTCTGTCGAGTCCCCCCCC
GTCGCCGTGGCCACCGCTTCCGAGACTGCCGATGACAAGCAGGTCATCCA
CAAGGCCTTCATCGCCGCCGGTATTCGGCTCCGCCCCCGCGAGGTGCAGC
CCTTGCTTCTGGCCCTGGGCGTCGTCCCTCGCCGCCTCGTGAAGCTCGGC
TACGTCGACAAGAAGCACCTGCCCCGCCTGCTCGTCGCGGAGAAGAAGAT
GGCCAACGCCAGTGGTGGCGCTGACGGTAACAGAATCCCGAACGCCGCCG
CAAACCTGCAGCAGAAGCGGCAGCAGCTTTGCCAGCAGCGGCAGCGGCAG
CTGCAGATCCGGCAGCGGCTTCGGCAGCAGCGGCAGCAGCAGCGGCGTAT
GGCCCGCGGAGGTGGCGGCCGCTGCGGCCTCGCTGGGCCCGTGATACAGA
GGGGCTGC
back to top