mRNA_P-fluviatile_contig15.2581.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2581.1
Unique NamemRNA_P-fluviatile_contig15.2581.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2581.1 vs. uniprot
Match: D7G0J2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0J2_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 2.380e-36
Identity = 90/162 (55.56%), Postives = 110/162 (67.90%), Query Frame = 1 
Query:  589 ELSALHRACVSLGRRRERAPEPAVLGSDIEWIARPTGPHGPPATFQLVARDGHTVFFHLKRDEWKDGVVRAALKELLANNTVTLADDSVKADLTHVFNSYGARGT*GVDVGQLAAQYLDVMVEARSLQALTATLRRRQLPRDQVCSSNWEALLSQKR*TGAG 1074
            ELS+  R C+ L  RR RA  PAVLG DIEW  RP+GP    A  QL ARDG+TV FHLK +E + G++  ALKELL N+T+ LA  SV+ DLTH+FNSYG  GT  VD+GQLA  +L V   ARSLQALTA L  R+L +D V +SNWE  L++ +   AG
Sbjct:  100 ELSS--RICLQL-LRRARASAPAVLGFDIEWSVRPSGPRRQVALVQLSARDGYTVLFHLKYEERRRGILPTALKELLVNDTIQLAGVSVRGDLTHLFNSYGVHGTKPVDIGQLAGVHLHVKNGARSLQALTAELLHRRLAKDAVRTSNWETTLTKDQEKYAG 258
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BLAST of mRNA_P-fluviatile_contig15.2581.1 vs. uniprot
Match: A0A6H5KSD7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSD7_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.650e-8
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 2 
Query: 1424 VPLGRHEADDWTQGWGNTRMVVRLTK-YIPEALALHPREDGGGPQALDQLELGTLVLSDAVN 1606
            + +GR E        G TRMVVRLTK YIP ALAL+P  DGG PQAL++LELGTL+L DAV+
Sbjct:  521 LAIGRREG-------GTTRMVVRLTKKYIPGALALYPCHDGGEPQALEELELGTLMLWDAVH 575
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G0J2_ECTSI2.380e-3655.563'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5KSD7_9PHAE2.650e-861.29Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:2569563..2572682 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.5
Seed ortholog evalue1.5e-22
Seed eggNOG ortholog2880.D7G0J2
Preferred nameWRN
KEGG koko:K10900,ko:K20777
GOsGO:0000018,GO:0000019,GO:0000217,GO:0000287,GO:0000400,GO:0000403,GO:0000405,GO:0000723,GO:0000724,GO:0000725,GO:0000731,GO:0000738,GO:0000781,GO:0001302,GO:0001325,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006284,GO:0006302,GO:0006308,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007154,GO:0007275,GO:0007568,GO:0007569,GO:0008026,GO:0008094,GO:0008104,GO:0008150,GO:0008152,GO:0008156,GO:0008296,GO:0008297,GO:0008309,GO:0008310,GO:0008311,GO:0008408,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009267,GO:0009314,GO:0009378,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010212,GO:0010225,GO:0010259,GO:0010332,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010941,GO:0015630,GO:0016043,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016796,GO:0016817,GO:0016818,GO:0016887,GO:0016895,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022607,GO:0030145,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031667,GO:0031668,GO:0031669,GO:0031974,GO:0031981,GO:0032200,GO:0032356,GO:0032357,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0033036,GO:0033365,GO:0033554,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0040008,GO:0040009,GO:0042162,GO:0042592,GO:0042594,GO:0042623,GO:0042802,GO:0042803,GO:0042981,GO:0042995,GO:0043005,GO:0043067,GO:0043085,GO:0043138,GO:0043140,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044451,GO:0044464,GO:0044806,GO:0044877,GO:0045005,GO:0045910,GO:0045911,GO:0045934,GO:0045935,GO:0045950,GO:0046483,GO:0046700,GO:0046872,GO:0046914,GO:0046983,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051054,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051276,GO:0051336,GO:0051345,GO:0051641,GO:0051716,GO:0051880,GO:0060249,GO:0060255,GO:0060542,GO:0061749,GO:0061820,GO:0061821,GO:0061849,GO:0062037,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070336,GO:0070337,GO:0070727,GO:0071103,GO:0071214,GO:0071478,GO:0071479,GO:0071480,GO:0071496,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090329,GO:0090656,GO:0090657,GO:0090737,GO:0097159,GO:0097458,GO:0098530,GO:0098687,GO:0104004,GO:0120025,GO:0140097,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902570,GO:1905773,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsKOG4373@1,KOG4373@2759
EC3.1.11.1,3.6.4.12
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons3
Model size2496
Cds size375
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2581.1prot_P-fluviatile_contig15.2581.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 2571640..2572151 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.6778457-UTR-P-fluviatile_contig15:2569562..25701011622815670.6778457-UTR-P-fluviatile_contig15:2569562..2570101Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2569563..2570101 -
1693562839.910486-UTR-P-fluviatile_contig15:2569562..25701011693562839.910486-UTR-P-fluviatile_contig15:2569562..2570101Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2569563..2570101 -
1622815670.7017014-UTR-P-fluviatile_contig15:2570588..25716391622815670.7017014-UTR-P-fluviatile_contig15:2570588..2571639Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2570589..2571639 -
1693562839.9263728-UTR-P-fluviatile_contig15:2570588..25716391693562839.9263728-UTR-P-fluviatile_contig15:2570588..2571639Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2570589..2571639 -
1622815670.737729-UTR-P-fluviatile_contig15:2572151..25726821622815670.737729-UTR-P-fluviatile_contig15:2572151..2572682Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2572152..2572682 -
1693562839.9530935-UTR-P-fluviatile_contig15:2572151..25726821693562839.9530935-UTR-P-fluviatile_contig15:2572151..2572682Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2572152..2572682 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.7153199-CDS-P-fluviatile_contig15:2571639..25717051622815670.7153199-CDS-P-fluviatile_contig15:2571639..2571705Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2571640..2571705 -
1693562839.9337046-CDS-P-fluviatile_contig15:2571639..25717051693562839.9337046-CDS-P-fluviatile_contig15:2571639..2571705Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2571640..2571705 -
1622815670.7265549-CDS-P-fluviatile_contig15:2571842..25721511622815670.7265549-CDS-P-fluviatile_contig15:2571842..2572151Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2571843..2572151 -
1693562839.9439356-CDS-P-fluviatile_contig15:2571842..25721511693562839.9439356-CDS-P-fluviatile_contig15:2571842..2572151Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2571843..2572151 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2581.1

>prot_P-fluviatile_contig15.2581.1 ID=prot_P-fluviatile_contig15.2581.1|Name=mRNA_P-fluviatile_contig15.2581.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=125bp
MASRLPRWSQGQSRGRDQRELSALHRACVSLGRRRERAPEPAVLGSDIEW
IARPTGPHGPPATFQLVARDGHTVFFHLKRDEWKDGVVRAALKELLANNT
VTLADDSVKADLTHVFNSYGARGT*
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mRNA from alignment at P-fluviatile_contig15:2569563..2572682-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2581.1 ID=mRNA_P-fluviatile_contig15.2581.1|Name=mRNA_P-fluviatile_contig15.2581.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3120bp|location=Sequence derived from alignment at P-fluviatile_contig15:2569563..2572682- (Porterinema fluviatile SAG_2381)
AGAGATGCCGGCCGAGACACGAGAGGAACGCTAAAAGCATCAGTACGAGC
AGCTTCACGCCAGACAACAGCGCCAAATTCGCGCGAAGATGCTCAGGGTG
TTGCGCCGAGCCCTCCCATGACCATTTTCATCGCGCACGTTAAGCGCATG
GATGACAGCATCGCGACGCGGGTTGGGAACTCTGAGCGAGATGAACGTAG
ATTAAGGCGCTCGCCCACCAGTATGTTTCTCAGGGTTTTCCCCTTCTCCA
GGTGCATTTGTCGTGTGGTTTTGCGGGTAATCCAGTGTATGTTGTGAAGT
ATTTTTACGTACTGGATTGTATGTTGTCGCTTCGACGCCATTTATTTCAC
AATACACCCTCCACCACCTGCAGATTTATCTTTCGGGAGTATGTGTCGGA
ACACGTTGCGCAGGTGTGCTACAGAGACAACTGCGGTGGGGACAGCTTCC
TTCAAGAGACGCTCGGAGAAGATCTGTGGCTGTCGAGGATGCCACCCACA
GTACATGCTTTGCCGACGAACCTGAGAGGCTATGGCTTCTCGACTTCCAA
GATGGTCTCAAGGGCAATCTCGTGGTCGTGATCAGCGAGAACTGTCAGCT
CTCCACCGCGCGTGCGTGTCGTTAGGACGTCGTCGCGAGCGTGCTCCAGA
ACCGGCGGTGCTCGGGAGCGACATTGAGTGGATTGCGCGTCCCACTGGGC
CTCACGGGCCCCCTGCAACCTTTCAGCTGGTAGCACGCGACGGCCACACG
GTTTTCTTTCACCTCAAGCGTGACGAGTGGAAGGATGGTGTCGTGCGGGC
AGCCCTCAAAGAGCTTCTAGCCAACAACACGGTGACGCTGGTACGTCTTT
TTTGGTGTGCGGCGTGAAGACGTAGCCTGTACTCCTCTTCCAAAACGCAA
TCGGGTGCCGTACCAAATATCCGTGTGCTTCCCTGCCTGATGCCTGTGTT
CCTATTTCGATTGTCGCTGCTTCTAAGGCGGATGATTCGGTGAAGGCGGA
TCTCACGCACGTTTTCAACAGCTACGGGGCGCGAGGAACATAGGGAGTGG
ATGTTGGCCAGCTGGCCGCACAGTATCTCGATGTCATGGTGGAAGCGCGC
TCGCTCCAGGCTCTGACAGCGACGTTGCGTCGGAGACAACTCCCCAGGGA
CCAAGTTTGTTCGAGTAACTGGGAGGCTCTTCTGAGCCAAAAGCGGTGAA
CTGGTGCTGGGTTTGCCCGGCTCCCGGCCGTAGTTTGCAGCGAGATTGTC
CGAGGGTTTACGGCGCGCGGGTGTTCTTTGTCAGCTCTTGTCAAAACTCT
ATCCCTGCCATCATTACTTTGTTTTCCTGTCTCTACTCGCGCTTCGGAAT
GCGATTCCGTAATGACGCAGGTTGACTATGTTGGACTTGATGCCCTCGCG
GAAGTTCTTCTGTTTGATCACGTTGACCAGCGAAAGGATCCATCTTCAAG
GATTCCCGGCCAGATATGGAGTCGCTTCCTGCCGACATCTATCTACGCCT
GTACATGGCGACCAACACTCGTTTCGTGGCAAAGGGGAGCCTTATGAACT
ATGAGGAAGTGTACCCTTGGGGAGACACGAAGCTGATGATTGGACGCAGG
GATGGGGTAATACACGTATGGTGGTGCGTTTGACGAAGTACATTCCTGAG
GCGTTGGCGCTACACCCCCGAGAAGATGGTGGCGGACCCCAGGCGCTCGA
CCAGCTTGAACTTGGGACCCTAGTCCTTTCGGATGCGGTAAATTGGGAGT
TGGGAGTATTGACTTTCGTTCTGTTTTATGTCACAAGGAGGTGGGTTTGC
GTTTGTTTCCCATTTTGCCGTCGCCGTCGTCAAAAGTGTGCTTGCCGTGT
CCCCTAATCGCTTTCCTTGCCGTGCACTTGCTGCATCCCCTCGGGTGAAC
CCGCGACTACCGAAAAGAACCGCCACCTATCCTGCCGGAGTTGGGCGCCG
TGGAAACGGATGGGGCTCCAGCCCTCGCCCCTCCCACTTCTACACTCGCT
CTCGATGCTGGGGCGGTGTCGTCTGTGGGGCGGGTGATTGCTGATGCTGT
TGGTGTTATCGGGGACGGCTCCTCGGGGGCGGCGACTATGGAAGGTGATG
GTGTCATTGGGGACAGCTCCTCGGATGAGGCACTCTAGCCTTGTTAAGCA
AGACTTTTTCCACATTGAGAATGATGTGCTGAAGAACGTTTCGACGGCGA
ACGGGGGATACCGCCCTTTCCGCGGTTCTCTCAGGGATGCCTTGGCGAGA
CCTGATCCTTAAGCCATGGCCCGCGTAAGGGCGCTGTTGCGGTAGCGATG
TCCTTCGCGGAGTGAAACGTAGCTCAGAGACTTCAAGGGAAGAAATTCTC
GAAACTTTTCTTGAAGCACGTCCCACAACTAGGGCCTCTTCCACTCGTCC
TTATTCCTCGATTCGAGGCCGTCATTCGCGATGGAATCACGGGTAAATTT
GTTCGTTTCCGAGCAATTGAAATTTTGCCTATCGTGCCAATGTGAGAAAA
GAACCCAACGGTTTGCCCTTCATGAAGTGATGACACTTTGCTTCATGTTT
TTCTTGCGTCACCGCCGCTTTTTTTTTCTAGAGAAATGCTGTTCAAGGAA
ACGTTGATTGAGGCCGCCGTAAACGCCCTCAAGCACCTGAACAAGGGCTG
TTTGAGTGATCCGGATCCCCGTAAGGTTCAACTGTTCCATCACGCAAGGC
GCACCAAAGATGGGCTCGACAAGGTCATCGGTGCGGGACACCGTTCGGAA
TGAGGGCTACCCAACGCCTGCGCCAACTGCTAGGCGCCTTCAACACCTAT
CGACTCTTGGTGCATTACATCCTGCTTCTACACAGCTTCAGGTGGAACCG
TCGCATGGGAAATAGGTTCAATTTCTGTGCGTTCGACCGGTGTGTTGTCA
ACCTTGAGGTGCAGTGTAAACAGGCCGAGGCGACCCACTCAGAAGCAGGA
GGTCTAGGTAGGGCGGGTCTCGTGTAGCTCGCTGAAACAATATTTCCCGA
ACTTTTCCGGTTCACCTTTTTTCTTTGTCGGATTCCCAGTCCTTCACCGA
GGCATGCCCTCCGAACTCCGAGACTTTTACAACCACGACGTGGTTGCGGA
CATTCAAGCTCTCACACGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:2569563..2572682-

>mRNA_P-fluviatile_contig15.2581.1 ID=mRNA_P-fluviatile_contig15.2581.1|Name=mRNA_P-fluviatile_contig15.2581.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=750bp|location=Sequence derived from alignment at P-fluviatile_contig15:2569563..2572682- (Porterinema fluviatile SAG_2381)
ATGGCTTCTCGACTTCCAAGATGGTCTCAAGGGCAATCTCGTGGTCGTGA
TCAGCGAGAACTGTCAGCTCTCCACCGCGCGTGCGTGTCGTTAGGACGTC
GTCGCGAGCGTGCTCCAGAACCGGCGGTGCTCGGGAGCGACATTGAGTGG
ATTGCGCGTCCCACTGGGCCTCACGGGCCCCCTGCAACCTTTCAGCTGGT
AGCACGCGACGGCCACACGGTTTTCTTTCACCTCAAGCGTGACGAGTGGA
AGGATGGTGTCGTGCGGGCAGCCCTCAAAGAGCTTCTAGCCAACAACACG
GTGACGCTGATGGCTTCTCGACTTCCAAGATGGTCTCAAGGGCAATCTCG
TGGTCGTGATCAGCGAGAACTGTCAGCTCTCCACCGCGCGTGCGTGTCGT
TAGGACGTCGTCGCGAGCGTGCTCCAGAACCGGCGGTGCTCGGGAGCGAC
ATTGAGTGGATTGCGCGTCCCACTGGGCCTCACGGGCCCCCTGCAACCTT
TCAGCTGGTAGCACGCGACGGCCACACGGTTTTCTTTCACCTCAAGCGTG
ACGAGTGGAAGGATGGTGTCGTGCGGGCAGCCCTCAAAGAGCTTCTAGCC
AACAACACGGTGACGCTGGCGGATGATTCGGTGAAGGCGGATCTCACGCA
CGTTTTCAACAGCTACGGGGCGCGAGGAACATAGGCGGATGATTCGGTGA
AGGCGGATCTCACGCACGTTTTCAACAGCTACGGGGCGCGAGGAACATAG
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