mRNA_P-fluviatile_contig15.2531.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2531.1
Unique NamemRNA_P-fluviatile_contig15.2531.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2531.1 vs. uniprot
Match: D7FV65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV65_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 6.940e-37
Identity = 76/116 (65.52%), Postives = 85/116 (73.28%), Query Frame = 3 
Query:   54 MEIVNPLLAHALDLLKRGHAESAEAAFAEAASACCEAHGEIDIVTARTLAHVARVSCLRGKRDFALQVYERILRIHEALPAPSNSDHAIVLSELAQIHHERGSQGEAMTLWRSLAV 401
            MEIVNPLLA+AL +LK+G  E AE  F +A SAC  A GE DIVTARTLAH+ARV  L+GK D A+Q+YERILRIHEALP P NSDHA+ L ELA I  E GSQG A  L R   V
Sbjct:    1 MEIVNPLLANALGVLKQGSTEIAEKEFTKAVSACLTAFGETDIVTARTLAHLARVCRLQGKVDVAIQMYERILRIHEALPEPLNSDHAVALGELAAIREEGGSQGSADILRRRADV 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2531.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV65_ECTSI6.940e-3765.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:2086930..2088536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size752
Cds size588
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2531.1prot_P-fluviatile_contig15.2531.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 2086983..2088425 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.16075-UTR-P-fluviatile_contig15:2086929..20869821622815665.16075-UTR-P-fluviatile_contig15:2086929..2086982Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2086930..2086982 +
1693562821.1834223-UTR-P-fluviatile_contig15:2086929..20869821693562821.1834223-UTR-P-fluviatile_contig15:2086929..2086982Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2086930..2086982 +
1622815665.2021759-UTR-P-fluviatile_contig15:2088425..20885361622815665.2021759-UTR-P-fluviatile_contig15:2088425..2088536Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2088426..2088536 +
1693562821.2262967-UTR-P-fluviatile_contig15:2088425..20885361693562821.2262967-UTR-P-fluviatile_contig15:2088425..2088536Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2088426..2088536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.1728706-CDS-P-fluviatile_contig15:2086982..20871021622815665.1728706-CDS-P-fluviatile_contig15:2086982..2087102Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2086983..2087102 +
1693562821.1949284-CDS-P-fluviatile_contig15:2086982..20871021693562821.1949284-CDS-P-fluviatile_contig15:2086982..2087102Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2086983..2087102 +
1622815665.1831968-CDS-P-fluviatile_contig15:2087935..20881341622815665.1831968-CDS-P-fluviatile_contig15:2087935..2088134Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2087936..2088134 +
1693562821.20377-CDS-P-fluviatile_contig15:2087935..20881341693562821.20377-CDS-P-fluviatile_contig15:2087935..2088134Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2087936..2088134 +
1622815665.1926794-CDS-P-fluviatile_contig15:2088156..20884251622815665.1926794-CDS-P-fluviatile_contig15:2088156..2088425Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2088157..2088425 +
1693562821.2133656-CDS-P-fluviatile_contig15:2088156..20884251693562821.2133656-CDS-P-fluviatile_contig15:2088156..2088425Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2088157..2088425 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2531.1

>prot_P-fluviatile_contig15.2531.1 ID=prot_P-fluviatile_contig15.2531.1|Name=mRNA_P-fluviatile_contig15.2531.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=196bp
MEIVNPLLAHALDLLKRGHAESAEAAFAEAASACCEAHGEIDIVTARTLA
HVARVSCLRGKRDFALQVYERILRIHEALPAPSNSDHAIVLSELAQIHHE
RGSQGEAMTLWRSLAVAFELQPGEKRRKQLPLRKGARHVATTHPATRRRK
ISATRKTRRVVTTKRAIAKMKMTKMRRLTPVANSRINGSRRHNVC*
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mRNA from alignment at P-fluviatile_contig15:2086930..2088536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2531.1 ID=mRNA_P-fluviatile_contig15.2531.1|Name=mRNA_P-fluviatile_contig15.2531.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1607bp|location=Sequence derived from alignment at P-fluviatile_contig15:2086930..2088536+ (Porterinema fluviatile SAG_2381)
GTCCAGAAGGACCTAAGGATGGTGAGAGCCCTGGTTCGTAGAGAGCAGGT
CTCATGGAGATTGTCAATCCCCTACTTGCTCACGCTCTTGATCTTCTCAA
GAGAGGACACGCTGAATCAGCAGAGGCAGCATTCGCTGAGGCTGCATCTG
CCTGCTGCGAGGCGCACGGCGAGGTACGCGAACATTCCATTTCCTTCATG
ACGATCTTGTGTTAGTCCGCCACAGCAATGGTGACAGCCACAGCAGTCCC
GCGAGGCGAAGAGGACCGTGAACATACATTTCAGTCATGAAAATATGTTG
TGGCATAAATTTGATTACTAGCACAGTAATACAGATGACCCGGCGCGCTG
TCGAGAAACTTCAGAGACGGGTTGAGGCACTTCATCCTTAATTTGGCCCG
GAAGAACGAGCATTTACTCAATTTCAAAAACCAGCTTATCCTTTTCCCGT
GCTACCAAAACATGCTTCAATGTGACTTTTCCTTTATTGTGCTCCTGTCC
CGGATCCGGCATCATAGACTGCTCAGAGCTGGCACGTCGACAACTCCTTT
CTCAGGGCAACTAACCTGGTCAAGCCCTCGACAGAGGCGGTCGAGAGAGC
CATGGGAGCGGTGCAAAGAGCAAACTACATGCGCGTTGGTTCGCTACGTA
CGCGCAGCTATTTGTGAACAGAATCGCTTCGGTGCCGGGGGCCATGCATT
TAAATTACACACAAACCCGCACCAAAAAAGAACTATATTTCGTGTCGGGG
TGTGGTCCAAAATCACACAATGACAGCAACTCGGGGCACCCTTTCATCGG
TGCTTATTTCTTATCTTGGCGGGGGTGTCGGATGCTTGTTTCCCACTGGG
TTGTTGCTTATGCTGCGGTTTACATAGAGGTGTGCTTCTTAGCTTTAAAA
AAAGTCTCATGAAATTTGAGCTCTTGTTTCTTTACTGTTTGTTTCTTAAA
TTAACAGCAGCAGGCCGCGTCCATCTGTACCGACCCGGCGATTATCCTCC
GTGCAGATTGACATCGTAACAGCGAGGACGCTGGCACACGTTGCTCGTGT
GTCATGTTTGCGTGGAAAGCGAGATTTCGCACTCCAAGTTTACGAGAGGA
TATTGAGAATTCACGAGGCTCTGCCGGCTCCATCAAACTCCGATCATGCC
ATTGTGCTGAGCGAGCTTGCTCAAATCCACCACGAAAGGGGTTCTCAGGG
AGAGGCTCAAATTCTACGTCGCCGGGCCGATGACATTATGGAGGAGCTTG
GCTGTCGCTTTCGAGCTTCAGCCGGGAGAGAAACGAAGGAAGCAGCTGCC
GCTCCGGAAGGGGGCCAGACATGTAGCGACGACACATCCGGCGACGAGGA
GGAGGAAGATATCAGCGACGAGGAAGACGAGGAGGGTGGTAACGACAAAA
AGAGCGATAGCGAAAATGAAGATGACCAAAATGAGGCGGCTAACGCCAGT
GGCCAACAGCCGGATTAACGGTAGCAGAAGACACAATGTATGTTGACAGC
CAATGTGGATGTTCAGGGTAGACCGATGGAAGAATGCCGCCAATACAGGC
TTTGGACACAAGTCTTACTATCGAGGATCGGGAGCTCCGAGAGGAGGCGA
ATCGGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:2086930..2088536+

>mRNA_P-fluviatile_contig15.2531.1 ID=mRNA_P-fluviatile_contig15.2531.1|Name=mRNA_P-fluviatile_contig15.2531.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1176bp|location=Sequence derived from alignment at P-fluviatile_contig15:2086930..2088536+ (Porterinema fluviatile SAG_2381)
ATGGAGATTGTCAATCCCCTACTTGCTCACGCTCTTGATCTTCTCAAGAG
AGGACACGCTGAATCAGCAGAGGCAGCATTCGCTGAGGCTGCATCTGCCT
GCTGCGAGGCGCACGGCGAGATGGAGATTGTCAATCCCCTACTTGCTCAC
GCTCTTGATCTTCTCAAGAGAGGACACGCTGAATCAGCAGAGGCAGCATT
CGCTGAGGCTGCATCTGCCTGCTGCGAGGCGCACGGCGAGATTGACATCG
TAACAGCGAGGACGCTGGCACACGTTGCTCGTGTGTCATGTTTGCGTGGA
AAGCGAGATTTCGCACTCCAAGTTTACGAGAGGATATTGAGAATTCACGA
GGCTCTGCCGGCTCCATCAAACTCCGATCATGCCATTGTGCTGAGCGAGC
TTGCTCAAATCCACCACGAAAGGGGTTCTCAGGGAGAGGATTGACATCGT
AACAGCGAGGACGCTGGCACACGTTGCTCGTGTGTCATGTTTGCGTGGAA
AGCGAGATTTCGCACTCCAAGTTTACGAGAGGATATTGAGAATTCACGAG
GCTCTGCCGGCTCCATCAAACTCCGATCATGCCATTGTGCTGAGCGAGCT
TGCTCAAATCCACCACGAAAGGGGTTCTCAGGGAGAGGCGATGACATTAT
GGAGGAGCTTGGCTGTCGCTTTCGAGCTTCAGCCGGGAGAGAAACGAAGG
AAGCAGCTGCCGCTCCGGAAGGGGGCCAGACATGTAGCGACGACACATCC
GGCGACGAGGAGGAGGAAGATATCAGCGACGAGGAAGACGAGGAGGGTGG
TAACGACAAAAAGAGCGATAGCGAAAATGAAGATGACCAAAATGAGGCGG
CTAACGCCAGTGGCCAACAGCCGGATTAACGGTAGCAGAAGACACAATGT
ATGTTGACGATGACATTATGGAGGAGCTTGGCTGTCGCTTTCGAGCTTCA
GCCGGGAGAGAAACGAAGGAAGCAGCTGCCGCTCCGGAAGGGGGCCAGAC
ATGTAGCGACGACACATCCGGCGACGAGGAGGAGGAAGATATCAGCGACG
AGGAAGACGAGGAGGGTGGTAACGACAAAAAGAGCGATAGCGAAAATGAA
GATGACCAAAATGAGGCGGCTAACGCCAGTGGCCAACAGCCGGATTAACG
GTAGCAGAAGACACAATGTATGTTGA
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