mRNA_P-fluviatile_contig15.2360.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2360.1
Unique NamemRNA_P-fluviatile_contig15.2360.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2360.1 vs. uniprot
Match: A0A6H5K725_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K725_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.880e-12
Identity = 47/126 (37.30%), Postives = 61/126 (48.41%), Query Frame = 2 
Query:   47 SPLYEAPPELARPRVAAFHNQVASTPGQHGTPYDTSSRPGLPAPQPP------------SYPPANAPRDAIITHLRTHNFCFTRAFSGKCTRASCRYRHDDVPAGFYRAVSREKRGEPA--RQVVA 382
            +P   AP   +   VAAF N  ASTPGQHG P+ T+  P   A                ++PP  APR  I+ +L  H  C+   FS    +  CR+RHD +PA FY+ V R     P   R+VVA
Sbjct:  177 APPVAAPETPSSVAVAAFQNHKASTPGQHGVPF-TAKAPSSTAXXXXXXXXXXXXXXXXTHPPVTAPRSVILDYLMEHGICYAHVFSACRGQGRCRWRHDLLPASFYKDVPRPASRGPTHTRRVVA 301
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BLAST of mRNA_P-fluviatile_contig15.2360.1 vs. uniprot
Match: A0A6H5JX43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX43_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.280e-7
Identity = 33/90 (36.67%), Postives = 43/90 (47.78%), Query Frame = 2 
Query:  113 ASTPGQHGTPYDTSSRPGLPAPQPP------------SYPPANAPRDAIITHLRTHNFCFTRAFSGKCTRASCRYRHDDVPAGFYRAVSR 346
            ASTPGQH  P+ T+  P                    ++PP  APR  I+ HL  H  C+   FS    +  CR+RHD +PA FY+ V R
Sbjct:   49 ASTPGQHSVPF-TAKAPSSXXXXXXXXXXXXTTVIAVTHPPVTAPRSVILDHLMEHGTCYAHVFSACRRQGRCRWRHDLLPASFYKDVPR 137
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2360.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K725_9PHAE4.880e-1237.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX43_9PHAE2.280e-736.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:103583..103964 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size384
Cds size360
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.296613-UTR-P-fluviatile_contig15:103582..1036041622815641.296613-UTR-P-fluviatile_contig15:103582..103604Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 103583..103604 +
1693562648.0753884-UTR-P-fluviatile_contig15:103582..1036041693562648.0753884-UTR-P-fluviatile_contig15:103582..103604Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 103583..103604 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.308461-CDS-P-fluviatile_contig15:103604..1039641622815641.308461-CDS-P-fluviatile_contig15:103604..103964Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 103605..103964 +
1693562648.0853834-CDS-P-fluviatile_contig15:103604..1039641693562648.0853834-CDS-P-fluviatile_contig15:103604..103964Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 103605..103964 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2360.1prot_P-fluviatile_contig15.2360.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 103605..103964 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2360.1

>prot_P-fluviatile_contig15.2360.1 ID=prot_P-fluviatile_contig15.2360.1|Name=mRNA_P-fluviatile_contig15.2360.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=120bp
MSVRKDTDSPLYEAPPELARPRVAAFHNQVASTPGQHGTPYDTSSRPGLP
APQPPSYPPANAPRDAIITHLRTHNFCFTRAFSGKCTRASCRYRHDDVPA
GFYRAVSREKRGEPARQVVA
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mRNA from alignment at P-fluviatile_contig15:103583..103964+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2360.1 ID=mRNA_P-fluviatile_contig15.2360.1|Name=mRNA_P-fluviatile_contig15.2360.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=382bp|location=Sequence derived from alignment at P-fluviatile_contig15:103583..103964+ (Porterinema fluviatile SAG_2381)
CAACACCCATGCAGCCGCTGCCATGTCTGTCCGCAAGGATACTGACTCTC
CGCTGTACGAGGCTCCGCCGGAGCTCGCCCGCCCACGCGTCGCCGCTTTT
CACAACCAGGTCGCGTCTACTCCGGGCCAGCACGGCACGCCGTATGATAC
GTCTTCTCGGCCAGGACTTCCCGCCCCGCAGCCCCCGTCCTACCCGCCGG
CCAATGCACCTCGTGATGCGATCATCACTCACCTCCGAACGCACAATTTT
TGCTTCACGCGTGCCTTCTCCGGCAAGTGCACTCGTGCGAGCTGCAGGTA
CCGCCACGACGACGTCCCGGCCGGATTCTACCGCGCTGTTTCGCGGGAGA
AGCGTGGTGAGCCAGCCAGGCAGGTCGTCGCG
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:103583..103964+

>mRNA_P-fluviatile_contig15.2360.1 ID=mRNA_P-fluviatile_contig15.2360.1|Name=mRNA_P-fluviatile_contig15.2360.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=720bp|location=Sequence derived from alignment at P-fluviatile_contig15:103583..103964+ (Porterinema fluviatile SAG_2381)
ATGTCTGTCCGCAAGGATACTGACTCTCCGCTGTACGAGGCTCCGCCGGA
GCTCGCCCGCCCACGCGTCGCCGCTTTTCACAACCAGGTCGCGTCTACTC
CGGGCCAGCACGGCACGCCGTATGATACGTCTTCTCGGCCAGGACTTCCC
GCCCCGCAGCCCCCGTCCTACCCGCCGGCCAATGCACCTCGTGATGCGAT
CATCACTCACCTCCGAACGCACAATTTTTGCTTCACGCGTGCCTTCTCCG
GCAAGTGCACTCGTGCGAGCTGCAGGTACCGCCACGACGACGTCCCGGCC
GGATTCTACCGCGCTGTTTCGCGGGAGAAGCGTGGTGAGCCAGCCAGGCA
GGTCGTCGCGATGTCTGTCCGCAAGGATACTGACTCTCCGCTGTACGAGG
CTCCGCCGGAGCTCGCCCGCCCACGCGTCGCCGCTTTTCACAACCAGGTC
GCGTCTACTCCGGGCCAGCACGGCACGCCGTATGATACGTCTTCTCGGCC
AGGACTTCCCGCCCCGCAGCCCCCGTCCTACCCGCCGGCCAATGCACCTC
GTGATGCGATCATCACTCACCTCCGAACGCACAATTTTTGCTTCACGCGT
GCCTTCTCCGGCAAGTGCACTCGTGCGAGCTGCAGGTACCGCCACGACGA
CGTCCCGGCCGGATTCTACCGCGCTGTTTCGCGGGAGAAGCGTGGTGAGC
CAGCCAGGCAGGTCGTCGCG
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