mRNA_P-fluviatile_contig14.2319.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2319.1
Unique NamemRNA_P-fluviatile_contig14.2319.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2798435..2801787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1344
Cds size1272
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2319.1prot_P-fluviatile_contig14.2319.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 2798437..2801717 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.953865-UTR-P-fluviatile_contig14:2798434..27984361622815634.953865-UTR-P-fluviatile_contig14:2798434..2798436Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2798435..2798436 -
1693562612.0827613-UTR-P-fluviatile_contig14:2798434..27984361693562612.0827613-UTR-P-fluviatile_contig14:2798434..2798436Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2798435..2798436 -
1622815635.0232701-UTR-P-fluviatile_contig14:2801717..28017871622815635.0232701-UTR-P-fluviatile_contig14:2801717..2801787Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2801718..2801787 -
1693562612.1455188-UTR-P-fluviatile_contig14:2801717..28017871693562612.1455188-UTR-P-fluviatile_contig14:2801717..2801787Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 2801718..2801787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815634.9689682-CDS-P-fluviatile_contig14:2798436..27984991622815634.9689682-CDS-P-fluviatile_contig14:2798436..2798499Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2798437..2798499 -
1693562612.0955365-CDS-P-fluviatile_contig14:2798436..27984991693562612.0955365-CDS-P-fluviatile_contig14:2798436..2798499Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2798437..2798499 -
1622815634.982646-CDS-P-fluviatile_contig14:2799473..27996501622815634.982646-CDS-P-fluviatile_contig14:2799473..2799650Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2799474..2799650 -
1693562612.113542-CDS-P-fluviatile_contig14:2799473..27996501693562612.113542-CDS-P-fluviatile_contig14:2799473..2799650Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2799474..2799650 -
1622815634.9957707-CDS-P-fluviatile_contig14:2800419..28007251622815634.9957707-CDS-P-fluviatile_contig14:2800419..2800725Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2800420..2800725 -
1693562612.1283872-CDS-P-fluviatile_contig14:2800419..28007251693562612.1283872-CDS-P-fluviatile_contig14:2800419..2800725Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2800420..2800725 -
1622815635.0080364-CDS-P-fluviatile_contig14:2800991..28017171622815635.0080364-CDS-P-fluviatile_contig14:2800991..2801717Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2800992..2801717 -
1693562612.1374836-CDS-P-fluviatile_contig14:2800991..28017171693562612.1374836-CDS-P-fluviatile_contig14:2800991..2801717Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2800992..2801717 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2319.1

>prot_P-fluviatile_contig14.2319.1 ID=prot_P-fluviatile_contig14.2319.1|Name=mRNA_P-fluviatile_contig14.2319.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=424bp
MSPLAAAAAASTVESASNRMESPSTGCRRRKRDAAAVFIDGVLSWALKSV
GGNGNEGRVRHGETGGDGWSWDNRSWFETSCDDSDVFDANFSGERKEEKE
NPGKRGGRGRQRRQYRGKDDVLSVSNDTGGGGRGDDSALDGSDGVRDDNL
CDFGGGGGGDGDSDADGCDSARLEEARVLGRDSVTPTSAFDGVEDDDGAA
DDDEASPGTLAAAGTDSEADIREQDKKEEKFWDKDHNTRFLKGVTKLGNA
WARLAKKHNDSGEVVVDETGDHDGGGPRQAPQSASVGGLPKKSAKRRKKT
EVERGEKNEKKGRARYKLRWDLQWVEDEHGCFINVRTCPQASKQGFEEHG
SSWVDVAQPVRTREDQAARYAARSVDGDRNLRSKSNAFKTGRWDQDECER
FVEDEQGRDQEAEVDQGRARALH*
back to top

mRNA from alignment at P-fluviatile_contig14:2798435..2801787-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2319.1 ID=mRNA_P-fluviatile_contig14.2319.1|Name=mRNA_P-fluviatile_contig14.2319.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3353bp|location=Sequence derived from alignment at P-fluviatile_contig14:2798435..2801787- (Porterinema fluviatile SAG_2381)
TGTCGGAGATGGTGGTAGTGGAACTGGAGGCAGGAACCACACAATCCGCG
GACTACAGGCACTCGGCGCGATGAGCCCACTTGCAGCAGCGGCGGCGGCG
TCAACGGTGGAATCGGCGAGCAACCGGATGGAGTCACCGTCGACGGGCTG
TCGCCGGCGAAAGAGAGACGCCGCCGCAGTCTTCATCGATGGCGTGCTGT
CGTGGGCACTGAAGAGTGTCGGGGGAAACGGCAACGAAGGCAGAGTAAGG
CATGGCGAAACGGGTGGCGACGGCTGGAGCTGGGACAACAGGAGTTGGTT
TGAGACTTCTTGCGACGACAGCGACGTATTCGATGCAAACTTCTCGGGGG
AGAGGAAGGAGGAGAAGGAAAATCCGGGAAAACGTGGAGGGCGAGGACGG
CAACGACGACAGTATCGAGGGAAAGATGACGTGTTAAGCGTGAGCAACGA
CACCGGTGGTGGTGGCAGAGGCGATGACAGCGCGCTTGACGGTAGTGATG
GCGTTCGCGATGACAATCTATGTGATTTCGGTGGAGGTGGTGGTGGTGAT
GGTGACAGCGATGCAGATGGTTGTGATTCCGCCCGGCTTGAGGAAGCACG
AGTGCTCGGTAGGGACTCAGTGACGCCTACCAGCGCGTTCGACGGCGTGG
AGGACGATGACGGTGCGGCTGACGACGACGAAGCGTCACCAGGCACTCTG
GCGGCGGCGGGTACGGACAGCGAGGCAGACATAAGAGAGCAGGACAAGAA
GGAGGAGAAATTCTGGGACAAAGACCACAACACACGATTTTTGAAGGTGT
GGGCAAAGTGCTGGCGCTGAATTATCCACATTCAAGGCGGTTCGATCTTT
GTTCTCAAGTCCGCTGGTGTTACCTCGCACTGCTCATTTCACTTCATGGT
TTTACTTCGCAAGCAATACTAGGGGAGTTTTAGATTGTTGTGCGGTAAGG
TTCACGCTGTCTCATTCTTACCCACTTGCTCTCACTCACGCACTCTCTCT
CTCTCATCGTCCTGGCGTATTCCGCTCAACGCCTGCCCGTTTTCGACCTT
ACCCGTTCGAAGGGCGTCACAAAGTTGGGCAACGCGTGGGCTCGGCTAGC
TAAAAAACACAACGACAGCGGAGAAGTGGTGGTGGATGAGACCGGCGATC
ACGACGGCGGCGGCCCGCGCCAAGCACCGCAGTCGGCGTCGGTCGGCGGA
CTGCCGAAAAAGTCGGCAAAGCGGAGGAAGAAGACCGAGGTCGAAAGGGG
AGAGAAGAACGAGAAGAAGGGGCGTGCCCGCTATAAGCTGCGATGGGACT
TGCAGTGGGTTGAGGACGAGCACGGATGTTTTATCAACGTACGCACGTGT
CCGCAGGCTTCTAAGCAGGTGGGAGGAGAGCAGCCAGTGTAGTAACTCGA
GCGTTGGAAAAGACGACGAAGGGAATGAGGGGCGGGGGGGCGAGAGGGCG
AGAGGAAGTGTGTGTGTGAAGGAGAGAATACCGAGGAAGGCTTGATGAAT
CGCGCGTATTTCGAGGCGAATTTGCCCTCCGCTTACCTGGCGCCGAAACA
CCCCTGCTCACAGAACTACCCATGCCGATTTTTAATACCACGGCTGAGGA
ATGGCGCGGTTTCACTACCTCGCTGCACCACCTCGCGGCGGGGTCACGTT
GCGTCGTCACGATTTGAGGATATGCGCTCGATAGCGGTAGTGTGCTGTGG
CCATCCTTGTCCTCCCTGTCATCATCTTCATCATCCCCTGCACCCCGAAG
GATTAAAAGGGACACACGTTAGCTACCGGTAGCAAGCAGTTTGCACCAAC
TCCTTTTTTATGGCACACCATATGTTTCGGGGGGAGGCAGCAAGCAACAG
CAAGAAGTGGGTGAGTCAAGGAGTGGATGGCACGTCTGCTCCTCGCATTG
TAACGGTGCACGTATCCGAAAATCACGTAGTCGCTTGGTGACGTGTTGAA
AAGCGCGGTGCATCGGTTCGTTCGCAAGTTCCATTCGACCAAAAAACGCA
AAACCGAGCCGAGCTTGTTGCTTGTTCTGCAAGAAAAAAATTAAGCCTGT
AGGAGTAAACTATCATATCGTCTGCTTTGTTGATTGCTAATTGCCCTCCC
ACCGCCTTTGGTGTGCCTGTCCGTTGCTCGCGCGAAGGGTTTCGAGGAGC
ACGGTAGTTCGTGGGTCGACGTAGCGCAGCCTGTGCGCACCCGCGAAGAC
CAGGCCGCCAGGTACGCGGCGCGCTCGGTGGACGGCGACCGGAACCTCCG
CAGCAAATCCAATGCCTTCAAGACCGGCCGGTGGGACCAGGACGAGTGCG
AGCGATTCGTGGAGGTAACCGCGGGGAGAGGTGGGGCGCCAGGGACGGGA
GGGAGGGGAGGGGGATCTGGGGGTTTGTAAACGACAAGCATGTACTCTGG
ATTCACTCACAGCGGTCAAACGAAGGGTGTGGATCGGCCGCTACACATTT
ACACACCCGTTTTCCCGCTCCGCGAGTTGATGGGATTTCTCCTGGGTGGT
AGACGTAATGCGGACCCCAACACGAATCGCTGAGGCCGATTTCACGCCCT
CTCACCCGTTCAGTCAACTTGATGTTATGTTAGAGGGATGGAGGTGAGTA
ATACGAACGGGGTGCAGACCATTCAAATATGTTCTGTGAGAGTAATGGGG
ACATTTTTGTTCATTGCCTACTCCCCTCTCGAAATGCCGAAGGGAAAAGA
GAGTATGTTAGACCAGGGCACCAATCATTGGGTGATCGATTCTGACGGGG
CGATTGGTTCTGACGGGGTGATGCGATGCCAATACGCCACATAGACTCGG
CTCGTGGACAACATGATGACCAATGGAGGGTGTTAATATCACCAGCGTGT
TTCACGAGTAGGGAAAAGTCGGATCCGAATTGTTTTGTTTTTCCCGCATT
CGATCAGTCGGAAAATGTTGGGAATGCGGTTATTATGCTCATGTATGACG
TATGAGAGTTTGTCCTGCTTCGCCCCTTTTCCCGCGCTAGTGATTGAGAA
GAAGCGATATTGTACGGTGCTTGCGACGGCTGACTGCAAATCACGCACGG
ACGATGCCCTCGCTGCCGCCTGTCCCGGACACTCGCACGCCCCTACTTTT
CCATGCCATTTTTCATGCGCGCGCGTTTCTTCTTCGCTACGTTCTTGTGT
CGCCCACGGAGCGCAGGGGCTCAAAAAGTTCGGCCGCTCGTCGAATGATA
TCGCAGCGGTGGTGGGCACGCGGTCACCGAAGCAAGTCAGGATGTTCATG
TTCCGTCACCCGAACGCGCATTTATCCGGGGGTGACAGGACGAGCAAGGG
CGAGACCAAGAAGCCGAGGTGGACCAAGGAAGAGCACGAGCGCTTCATTG
AGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:2798435..2801787-

>mRNA_P-fluviatile_contig14.2319.1 ID=mRNA_P-fluviatile_contig14.2319.1|Name=mRNA_P-fluviatile_contig14.2319.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2544bp|location=Sequence derived from alignment at P-fluviatile_contig14:2798435..2801787- (Porterinema fluviatile SAG_2381)
ATGAGCCCACTTGCAGCAGCGGCGGCGGCGTCAACGGTGGAATCGGCGAG
CAACCGGATGGAGTCACCGTCGACGGGCTGTCGCCGGCGAAAGAGAGACG
CCGCCGCAGTCTTCATCGATGGCGTGCTGTCGTGGGCACTGAAGAGTGTC
GGGGGAAACGGCAACGAAGGCAGAGTAAGGCATGGCGAAACGGGTGGCGA
CGGCTGGAGCTGGGACAACAGGAGTTGGTTTGAGACTTCTTGCGACGACA
GCGACGTATTCGATGCAAACTTCTCGGGGGAGAGGAAGGAGGAGAAGGAA
AATCCGGGAAAACGTGGAGGGCGAGGACGGCAACGACGACAGTATCGAGG
GAAAGATGACGTGTTAAGCGTGAGCAACGACACCGGTGGTGGTGGCAGAG
GCGATGACAGCGCGCTTGACGGTAGTGATGGCGTTCGCGATGACAATCTA
TGTGATTTCGGTGGAGGTGGTGGTGGTGATGGTGACAGCGATGCAGATGG
TTGTGATTCCGCCCGGCTTGAGGAAGCACGAGTGCTCGGTAGGGACTCAG
TGACGCCTACCAGCGCGTTCGACGGCGTGGAGGACGATGACGGTGCGGCT
GACGACGACGAAGCGTCACCAGGCACTCTGGCGGCGGCGGGTACGGACAG
CGAGGCAGACATAAGAGAGCAGGACAAGAAGGAGGAGAAATTCTGGGACA
AAGACCACAACACACGATTTTTGAAGATGAGCCCACTTGCAGCAGCGGCG
GCGGCGTCAACGGTGGAATCGGCGAGCAACCGGATGGAGTCACCGTCGAC
GGGCTGTCGCCGGCGAAAGAGAGACGCCGCCGCAGTCTTCATCGATGGCG
TGCTGTCGTGGGCACTGAAGAGTGTCGGGGGAAACGGCAACGAAGGCAGA
GTAAGGCATGGCGAAACGGGTGGCGACGGCTGGAGCTGGGACAACAGGAG
TTGGTTTGAGACTTCTTGCGACGACAGCGACGTATTCGATGCAAACTTCT
CGGGGGAGAGGAAGGAGGAGAAGGAAAATCCGGGAAAACGTGGAGGGCGA
GGACGGCAACGACGACAGTATCGAGGGAAAGATGACGTGTTAAGCGTGAG
CAACGACACCGGTGGTGGTGGCAGAGGCGATGACAGCGCGCTTGACGGTA
GTGATGGCGTTCGCGATGACAATCTATGTGATTTCGGTGGAGGTGGTGGT
GGTGATGGTGACAGCGATGCAGATGGTTGTGATTCCGCCCGGCTTGAGGA
AGCACGAGTGCTCGGTAGGGACTCAGTGACGCCTACCAGCGCGTTCGACG
GCGTGGAGGACGATGACGGTGCGGCTGACGACGACGAAGCGTCACCAGGC
ACTCTGGCGGCGGCGGGTACGGACAGCGAGGCAGACATAAGAGAGCAGGA
CAAGAAGGAGGAGAAATTCTGGGACAAAGACCACAACACACGATTTTTGA
AGGGCGTCACAAAGTTGGGCAACGCGTGGGCTCGGCTAGCTAAAAAACAC
AACGACAGCGGAGAAGTGGTGGTGGATGAGACCGGCGATCACGACGGCGG
CGGCCCGCGCCAAGCACCGCAGTCGGCGTCGGTCGGCGGACTGCCGAAAA
AGTCGGCAAAGCGGAGGAAGAAGACCGAGGTCGAAAGGGGAGAGAAGAAC
GAGAAGAAGGGGCGTGCCCGCTATAAGCTGCGATGGGACTTGCAGTGGGT
TGAGGACGAGCACGGATGTTTTATCAACGTACGCACGTGTCCGCAGGCTT
CTAAGCAGGGCGTCACAAAGTTGGGCAACGCGTGGGCTCGGCTAGCTAAA
AAACACAACGACAGCGGAGAAGTGGTGGTGGATGAGACCGGCGATCACGA
CGGCGGCGGCCCGCGCCAAGCACCGCAGTCGGCGTCGGTCGGCGGACTGC
CGAAAAAGTCGGCAAAGCGGAGGAAGAAGACCGAGGTCGAAAGGGGAGAG
AAGAACGAGAAGAAGGGGCGTGCCCGCTATAAGCTGCGATGGGACTTGCA
GTGGGTTGAGGACGAGCACGGATGTTTTATCAACGTACGCACGTGTCCGC
AGGCTTCTAAGCAGGGTTTCGAGGAGCACGGTAGTTCGTGGGTCGACGTA
GCGCAGCCTGTGCGCACCCGCGAAGACCAGGCCGCCAGGTACGCGGCGCG
CTCGGTGGACGGCGACCGGAACCTCCGCAGCAAATCCAATGCCTTCAAGA
CCGGCCGGTGGGACCAGGACGAGTGCGAGCGATTCGTGGAGGGTTTCGAG
GAGCACGGTAGTTCGTGGGTCGACGTAGCGCAGCCTGTGCGCACCCGCGA
AGACCAGGCCGCCAGGTACGCGGCGCGCTCGGTGGACGGCGACCGGAACC
TCCGCAGCAAATCCAATGCCTTCAAGACCGGCCGGTGGGACCAGGACGAG
TGCGAGCGATTCGTGGAGGACGAGCAAGGGCGAGACCAAGAAGCCGAGGT
GGACCAAGGAAGAGCACGAGCGCTTCATTGAGACGAGCAAGGGCGAGACC
AAGAAGCCGAGGTGGACCAAGGAAGAGCACGAGCGCTTCATTGA
back to top