mRNA_P-fluviatile_contig14.2233.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2233.1
Unique NamemRNA_P-fluviatile_contig14.2233.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig14.2233.1 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE)

HSP 1 Score: 709 bits (1830), Expect = 8.470e-241
Identity = 431/761 (56.64%), Postives = 502/761 (65.97%), Query Frame = 1
Query:  322 TPTVKIVICGKEISVSNPTVRKKRKLPVEAVVTMAYKGQLALACKANNMISALKIYREMKSKGVKQDLSTYLMVLALCGGSPGDRDELDPGNGSTCSRVAFS-------AEAKVEGTSAKDDTHAAAETALQIFSDASNGGTVTLPESAYTSVIRACCLDGRVDRAREVLEDLKRADVIPRVRTYSPLLEAYAGLGGRLQDCMVIWREAVSPANG-RQGVTMTEREYLHLIAACTRARDEKCFLEVMAEYMDDVLQPRSRHSWDVLKAWFAVGPNVIGNGVVENGSEVASGA----KPE---VESPEEGEAIDAACPAGETSKHPSGGSGDGEGGHEPQRGDQEIVAAVASAAPEAEEALATPAALALXXXXXXAAATGTETSAPP-AKTAGRTGTPTLGDGGGEXXXXXXXXXXXXXXXXXXXXXXXXADSAVDPAAANGAADVQDEYTRESTPSSPSAIARSSFPRTADANSSTTAPAAERPRLPRSSSPAPVGAQ---EGGGGDDNHVPGAGEQASSTRGCGNESDDAMG-----LDDSKVSPSGGRRGDAGGDDVVSASGS--WRVAECKVGEDGTCENCGEVLRSIELSRDDEQRLLKQIEVLVCTNEQRTKQWEGYCGWLERRGKGRYNVIIDGANLGYYKQAAFSDGELADLRQVDWAVKKYEEEGKKPLVVLHSRHLADKRLSEEARTIYKRWKEAETIQSCAPKNNDDWYWLYAAVYMGGKVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 2526
            T   KI ICGKEI++ +   RKKRK P+E ++ +AYK +L L CKANNMISAL+I++EMKSKG+KQDLST++MVL+LCGGSPGDRDELDPGNGST    A         A+ +VEG SA+D+T AAAE ALQIFSDAS GGTV+LPESAYT+VIRACC DGR DRARE LE LK+A + PRVRTY+PLLEAY+ L GRL+DCM +WREAVSP  G +QG+TMTEREYLHLIAACTRARDEKCFLEVM EYMDDVLQPRSRHSWDVLK+WF VGPNVIGNG V++  EVA+      KPE   +E+P  GE  D            +GG  +G+GG   Q  +    +  A+AAP                    A A G   SAP  +K    T  P+    G                           DSA+ PA+++       +    S   +  A A S                      PR++    VG     +G GGDD     A E A    G     D+A+G       +  V  +  R   AGG+    + G+  W V EC V +DGTCENCGEV+RSIELS DDEQRLLKQIE LVCTNEQRT QWEG+ GWLERRGK RYNVIIDGAN+GYYK A  S+GELADLRQVDWAVKK+++EGKKPLVVLHSRHL +KRLS+EA+ IYKRWKEA+ IQSCAPKNNDDWYWLYAAVY GG VLVLTNDEMRDHHFSMLSHRSFQRWKERHQ 
Sbjct:  106 TTAGKITICGKEITLQHTGGRKKRKHPMETLILLAYKEELTLKCKANNMISALEIHQEMKSKGIKQDLSTHMMVLSLCGGSPGDRDELDPGNGSTGGHAASVERTAAAVAKGRVEGASAQDNTFAAAEAALQIFSDASKGGTVSLPESAYTAVIRACCRDGRADRAREALEALKQAGLKPRVRTYTPLLEAYSKLDGRLEDCMALWREAVSPPGGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKSWFKVGPNVIGNGYVKH-REVAAATTARTKPEEGEIENPRSGELPD------------NGGISEGDGGESGQ--ESTATSGAAAAAPT--------------LAGDAAGAPGVGDSAPSLSKAVVATEPPSARPDGSHG-----------------------TDSALAPASSSXXXXXXXQADGSSGDDATGAAATS----------------------PRAAGAYAVGRSFQADGCGGDD-----AMEDAPQADG-----DEAVGGPTPVAGEDAVEEASPRADAAGGEKEPPSGGTSGWIVTECYVRKDGTCENCGEVMRSIELSEDDEQRLLKQIEELVCTNEQRTHQWEGFRGWLERRGKQRYNVIIDGANVGYYK-ACLSEGELADLRQVDWAVKKFQDEGKKPLVVLHSRHLVEKRLSDEAKEIYKRWKEADMIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQA 781          
BLAST of mRNA_P-fluviatile_contig14.2233.1 vs. uniprot
Match: D7FNK6_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK6_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 5.480e-119
Identity = 195/270 (72.22%), Postives = 225/270 (83.33%), Query Frame = 1
Query:  322 TPTVKIVICGKEISVSNPTVRKKRKLPVEAVVTMAYKGQLALACKANNMISALKIYREMKSKGVKQDLSTYLMVLALCGGSPGDRDELDPGNGSTCSRVAFS-------AEAKVEGTSAKDDTHAAAETALQIFSDASNGGTVTLPESAYTSVIRACCLDGRVDRAREVLEDLKRADVIPRVRTYSPLLEAYAGLGGRLQDCMVIWREAVSPANG-RQGVTMTEREYLHLIAACTRARDEKCFLEVMAEYMDDVLQPRSRHSWDVLKAWF 1107
            T   KI ICGKEI++ +   RKKRK P+E ++ +AYK +L L CKANNM+SAL+I++EMKSKG+KQDLST++MVL+LCGGSPGDRDELDPGNG T    A         A+ +VEG SA+D+T AAAE ALQIFSDAS GGTV+LPESAYT+VIRACC DGR DRARE LE LK+AD+ PRVRTY+PLLEAY+ L GRL+DCM +WREAVSP  G +QG+TMTEREYLHLIAACTRARDEKCFLEVM EYMDDVLQPRSRHSWDVLKAWF
Sbjct:  105 TTAGKITICGKEITLQHTGGRKKRKHPMETLILLAYKDELTLKCKANNMVSALEIHQEMKSKGIKQDLSTHMMVLSLCGGSPGDRDELDPGNGLTGGHAASVERTAAAVAKGRVEGASAQDNTFAAAEAALQIFSDASKGGTVSLPESAYTAVIRACCRDGRADRAREALEALKQADLKPRVRTYTPLLEAYSKLDGRLEDCMTLWREAVSPPAGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKAWF 374          
BLAST of mRNA_P-fluviatile_contig14.2233.1 vs. uniprot
Match: A0A1V9YXD0_9STRA (Ribonuclease P n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXD0_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.440e-45
Identity = 91/200 (45.50%), Postives = 129/200 (64.50%), Query Frame = 1
Query: 1945 WRVAE---CKVG---EDGTCENCGEVLRSIELSRDDEQRLLKQIEVLVCTNEQRTKQWEGYCGWLERRGKGRYNVIIDGANLGYYKQAAFSDGELADLRQVDWAVKKYEEEGKKPLVVLHSRHLADKRLSEEARTIYKRWKEAETIQSCAPKNNDDWYWLYAAVYMGGKVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 2526
            W ++E   CK G   EDG C   G  L SIELS++ E  LLK++E LVCT+++RT+QW  +  W++  G   Y+V++D AN+GY+ Q    +G   + +Q+   ++ Y+  GKK L+VLH R  +DK + E  R++   W++   + +C P NNDDWYWLYAAV   G+ LV++NDEMRDHHF M+S   F RWKERH V
Sbjct:  223 WFMSEGFTCKEGTVNEDGICSVTGAKLLSIELSKEKEDILLKKVEGLVCTSDERTEQWNEFKSWIDENGP--YDVLLDAANIGYFNQNY--EGGGFNYKQIQRVLQAYQRRGKKVLIVLHKRRTSDKEVPEHLRSMVAGWRDKNEMYNCRPGNNDDWYWLYAAVNFSGRTLVVSNDEMRDHHFQMISGVDFHRWKERHLV 418          
BLAST of mRNA_P-fluviatile_contig14.2233.1 vs. uniprot
Match: H3H2L4_PHYRM (Ribonuclease P n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H2L4_PHYRM)

HSP 1 Score: 180 bits (456), Expect = 5.880e-45
Identity = 90/194 (46.39%), Postives = 127/194 (65.46%), Query Frame = 1
Query: 1945 WRVAECKVGEDGTCENCGEVLRSIELSRDDEQRLLKQIEVLVCTNEQRTKQWEGYCGWLERRGKGRYNVIIDGANLGYYKQAAFSDGELADLRQVDWAVKKYEEEGKKPLVVLHSRHLADKRLSEEARTIYKRWKEAETIQSCAPKNNDDWYWLYAAVYMGGKVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 2526
            W++ E  V E+G C   G+ L+S+EL  + E  LL ++E LV T+E+RT QW+ +  WL   G   ++VIID AN+GY  Q    DG   +  Q++  V+ YE  G KPL+VLH R   D+++  E R    +W+ +  + +C P NNDDWYWLYAAV +GG+ L+++NDEMRDHHF M+ +R+F RWKERHQV
Sbjct:  251 WKITEGTVSEEGVCSVTGDQLQSLELEAELEAELLAKVEKLVRTDEKRTAQWDAFKQWLGEFGP--FDVIIDAANVGYCNQNF--DGGGFNYAQIELMVQHYEARGNKPLLVLHERRTWDEQVPAEHRAQVAQWRASHKMFNCQPGNNDDWYWLYAAVKLGGRTLMISNDEMRDHHFQMIHNRAFGRWKERHQV 440          
BLAST of mRNA_P-fluviatile_contig14.2233.1 vs. uniprot
Match: A0A1V9ZIW2_9STRA (Ribonuclease P n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIW2_9STRA)

HSP 1 Score: 179 bits (454), Expect = 7.820e-45
Identity = 86/197 (43.65%), Postives = 124/197 (62.94%), Query Frame = 1
Query: 1936 SGSWRVAECKVGEDGTCENCGEVLRSIELSRDDEQRLLKQIEVLVCTNEQRTKQWEGYCGWLERRGKGRYNVIIDGANLGYYKQAAFSDGELADLRQVDWAVKKYEEEGKKPLVVLHSRHLADKRLSEEARTIYKRWKEAETIQSCAPKNNDDWYWLYAAVYMGGKVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 2526
            S  W V    V E G C   G  L S+ELS   +  L+ ++E LVCT+++RT+QW  +  WL+  G   ++VI+D AN+GY+ Q    +G     RQ+   +  Y+  GKK L+VLH R  +D+++ E+ R + + W++   + +C P NNDDWYWLYAAV +GG+ LV++NDEMRDHHF M+ +  F RWKERH V
Sbjct:  231 SDGWTVETGTVDESGVCSVTGSTLESVELSEAKQAALMTKVEGLVCTSDERTEQWAAFKEWLDTNGP--FDVILDAANIGYFSQNY--EGGGFSYRQIQRVLSAYQARGKKVLIVLHKRRTSDRQVPEDLRPLVQAWRDDGVMYNCLPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFQMIHNVDFHRWKERHLV 423          
BLAST of mRNA_P-fluviatile_contig14.2233.1 vs. uniprot
Match: K3WUG8_GLOUD (Ribonuclease P n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUG8_GLOUD)

HSP 1 Score: 178 bits (452), Expect = 1.830e-44
Identity = 89/194 (45.88%), Postives = 124/194 (63.92%), Query Frame = 1
Query: 1945 WRVAECKVGEDGTCENCGEVLRSIELSRDDEQRLLKQIEVLVCTNEQRTKQWEGYCGWLERRGKGRYNVIIDGANLGYYKQAAFSDGELADLRQVDWAVKKYEEEGKKPLVVLHSRHLADKRLSEEARTIYKRWKEAETIQSCAPKNNDDWYWLYAAVYMGGKVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 2526
            W  +   V + G C   G+ L+SIEL    E +LL++IE LV T+E+RT QWE +  WL   G   ++V+ID AN+GY+ Q    DG   D +Q++  +  YE++ K+ L+VLH R   D+++  E R +  +W E   + +C P NNDDWYWLYAAV +GG+ L +TNDEMRDHHF M+  R+F RWKERHQ 
Sbjct:  247 WTCSVGSVDDKGVCSVTGDQLQSIELPPALETKLLEKIESLVTTDERRTAQWEAFKTWLSEHGP--FDVVIDAANVGYFNQNY--DGGGFDYKQIETLLTHYEQQDKRVLIVLHKRRTMDEQVPAEHRAMVAQWAERRIMFNCLPGNNDDWYWLYAAVRLGGRTLAVTNDEMRDHHFQMIHDRAFARWKERHQT 436          
BLAST of mRNA_P-fluviatile_contig14.2233.1 vs. uniprot
Match: W4GZN2_9STRA (Ribonuclease P n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GZN2_9STRA)

HSP 1 Score: 177 bits (450), Expect = 3.500e-44
Identity = 98/246 (39.84%), Postives = 141/246 (57.32%), Query Frame = 1
Query: 1942 SWRVAECKVGEDGTCENCGEVLRSIELSRDDEQRLLKQIEVLVCTNEQRTKQWEGYCGWLERRGKGRYNVIIDGANLGYYKQAAFSDGELADLRQVDWAVKKYEEEGKKPLVVLHSRHLADKRLSEEARTIYKRWKEAETIQSCAPKNNDDWYWLYAAVYMGGKVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVI------------PLISSSGSFQGCCLLWEHSHRALFDWFGARFRRRPSAV 2643
            +W+    +V + G C   G  L+S+ELSR+ E  LL ++E LVCT+++R +QW  +  WL+  G   ++VIID AN+GY+ Q  F  G  +   Q+   +K Y+++G+KPL+VLH R   D ++ E  R + ++WK    + +C   NNDDWYWLYAAV + G+ LV++NDEMRDHHF M+ ++ F RWKERH V             P + S  S       W     A  DW    F RR S+V
Sbjct:  241 AWQCNIGEVNDQGICSVTGSTLQSVELSREKEDALLAKVENLVCTSDERIEQWTAFKTWLDEHGP--FDVIIDAANVGYFNQN-FEGGGFS-YPQIQTVLKAYQDKGQKPLIVLHKRRTKDHQVPEPHRAMVQQWKHDNVMFNCQYGNNDDWYWLYAAVKLSGRTLVVSNDEMRDHHFQMIHNQDFHRWKERHLVHYEVRGHKLDLHEPSVYSMRSQHLESGSWHFPSTASSDWLV--FHRRRSSV 480          
BLAST of mRNA_P-fluviatile_contig14.2233.1 vs. uniprot
Match: A0A7S2SKI7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKI7_9STRA)

HSP 1 Score: 174 bits (440), Expect = 3.920e-44
Identity = 82/174 (47.13%), Postives = 119/174 (68.39%), Query Frame = 1
Query: 2005 LRSIELSRDDEQRLLKQIEVLVCTNEQRTKQWEGYCGWLERRGKGRYNVIIDGANLGYYKQAAFSDGELADLRQVDWAVKKYEEEGKKPLVVLHSRHLADKRLSEEARTIYKRWKEAETIQSCAPKNNDDWYWLYAAVYMGGKVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 2526
            LRSI+L  ++ QR+L+Q+  L  T +    +W G+ GWLER+G+  ++V++DGAN+GY+KQ      +  +  Q+D  V+ ++ +GK+ L+ LH RHL  + L      + KRWK  +T+ +    +NDDW+WLYAAV++   V V+TNDEMRDHHF MLSHRSFQRWKERHQ+
Sbjct:   82 LRSIDLGGEERQRMLEQVSELALTGKDGAAKWAGFTGWLERKGRTAFDVLVDGANVGYFKQNYPGAPKHVNYEQIDCVVRHFQAQGKRVLLFLHQRHLFPQNLPASCVDLTKRWKSEKTLFTTPVGSNDDWFWLYAAVWLEN-VQVVTNDEMRDHHFRMLSHRSFQRWKERHQI 254          
BLAST of mRNA_P-fluviatile_contig14.2233.1 vs. uniprot
Match: A0A6A3RJW5_9STRA (Ribonuclease P n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A3RJW5_9STRA)

HSP 1 Score: 177 bits (449), Expect = 7.510e-44
Identity = 90/194 (46.39%), Postives = 128/194 (65.98%), Query Frame = 1
Query: 1945 WRVAECKVGEDGTCENCGEVLRSIELSRDDEQRLLKQIEVLVCTNEQRTKQWEGYCGWLERRGKGRYNVIIDGANLGYYKQAAFSDGELADLRQVDWAVKKYEEEGKKPLVVLHSRHLADKRLSEEARTIYKRWKEAETIQSCAPKNNDDWYWLYAAVYMGGKVLVLTNDEMRDHHFSMLSHRSFQRWKERHQV 2526
            W++ E  V ++G C   G  L+S+ELS +    LL +IE LV T+E+R  QW+ +  WLE  G   ++V+ID AN+GY  Q  F  G   + +Q++  V+ YE +GKK LVVLH R   D+++  E R    +W+ + T+ +C P NNDDWYWLYA V +GG+ L+++NDEMRDHHF M+ +R+F RWKERHQV
Sbjct:  256 WKITEGTVSKEGVCSVTGNQLQSLELSPELSAELLAKIEKLVRTDEKRMAQWDEFKQWLEEFGP--FDVVIDAANVGYCNQN-FEGGGF-NYKQIELMVQHYEAKGKKVLVVLHQRRTTDEQVPPEHRAQLVQWRASRTMFNCQPGNNDDWYWLYAVVKLGGRTLMVSNDEMRDHHFQMIHNRAFGRWKERHQV 445          
BLAST of mRNA_P-fluviatile_contig14.2233.1 vs. uniprot
Match: A0A024UCX6_9STRA (Ribonuclease P n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCX6_9STRA)

HSP 1 Score: 176 bits (447), Expect = 8.350e-44
Identity = 97/241 (40.25%), Postives = 139/241 (57.68%), Query Frame = 1
Query: 1960 CKVGE---DGTCENCGEVLRSIELSRDDEQRLLKQIEVLVCTNEQRTKQWEGYCGWLERRGKGRYNVIIDGANLGYYKQAAFSDGELADLRQVDWAVKKYEEEGKKPLVVLHSRHLADKRLSEEARTIYKRWKEAETIQSCAPKNNDDWYWLYAAVYMGGKVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVI------------PLISSSGSFQGCCLLWEHSHRALFDWFGARFRRRPS 2637
            C VGE    G C   G  L+S+ELS + +Q LL ++E LVCT+++R  QW  +  WL+  G   ++VIID AN+GY+ Q  F  G   +  Q+   V+ Y+ +G  PL+VLH R   D ++  + R + ++WK+ +T+ +C   NNDDWYWLYAAV +GG+ LV++NDEMRDHHF M+ ++ F RWKERH V             P + S  S Q     W     +  DW     RR+P+
Sbjct:  245 CNVGEVNKAGICSVTGSTLQSVELSAEKQQALLTKVENLVCTSDERVAQWAAFKAWLDEHGP--FDVIIDAANVGYFNQN-FEGGGF-NYGQIQTVVQAYQSKGLTPLIVLHKRRTKDNQVPAQHRAMVQQWKDEKTMFNCEYGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFQMIHNQDFHRWKERHLVHYEVRGHNVVLHEPSVYSKRS-QHLASSWHFPTTSSSDWLVFHRRRQPA 480          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB75_9PHAE8.470e-24156.64Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D7FNK6_ECTSI5.480e-11972.22PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A1V9YXD0_9STRA1.440e-4545.50Ribonuclease P n=1 Tax=Thraustotheca clavata TaxID... [more]
H3H2L4_PHYRM5.880e-4546.39Ribonuclease P n=1 Tax=Phytophthora ramorum TaxID=... [more]
A0A1V9ZIW2_9STRA7.820e-4543.65Ribonuclease P n=1 Tax=Achlya hypogyna TaxID=12027... [more]
K3WUG8_GLOUD1.830e-4445.88Ribonuclease P n=1 Tax=Globisporangium ultimum (st... [more]
W4GZN2_9STRA3.500e-4439.84Ribonuclease P n=3 Tax=Aphanomyces astaci TaxID=11... [more]
A0A7S2SKI7_9STRA3.920e-4447.13Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6A3RJW5_9STRA7.510e-4446.39Ribonuclease P n=3 Tax=Phytophthora TaxID=4783 Rep... [more]
A0A024UCX6_9STRA8.350e-4440.25Ribonuclease P n=3 Tax=Aphanomyces invadans TaxID=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:2000921..2009726 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score183.0
Seed ortholog evalue6.9e-43
Seed eggNOG ortholog164328.Phyra84631
KEGG koko:K17655,ko:K18213
KEGG Pathwayko03013,map03013
EggNOG free text desc.Protein-only RNase P
EggNOG OGs3Q88N@4776,COG0534@1,KOG1347@2759
Ec32 ortholog descriptionRibonuclease Zc3h12a-like
Ec32 orthologEc-01_005100.1
EC3.1.26.5
COG Functional cat.V
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016,ko03029
Hectar predicted targeting categoryother localisation
Exons8
Model size2932
Cds size2931
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2233.1prot_P-fluviatile_contig14.2233.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 2000921..2009726 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.4857676-CDS-P-fluviatile_contig14:2000920..20015091622815622.4857676-CDS-P-fluviatile_contig14:2000920..2001509Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2000921..2001509 -
1693562504.2945895-CDS-P-fluviatile_contig14:2000920..20015091693562504.2945895-CDS-P-fluviatile_contig14:2000920..2001509Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2000921..2001509 -
1622815622.5006762-CDS-P-fluviatile_contig14:2002245..20023281622815622.5006762-CDS-P-fluviatile_contig14:2002245..2002328Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2002246..2002328 -
1693562504.306957-CDS-P-fluviatile_contig14:2002245..20023281693562504.306957-CDS-P-fluviatile_contig14:2002245..2002328Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2002246..2002328 -
1622815622.5099647-CDS-P-fluviatile_contig14:2003713..20039171622815622.5099647-CDS-P-fluviatile_contig14:2003713..2003917Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2003714..2003917 -
1693562504.315826-CDS-P-fluviatile_contig14:2003713..20039171693562504.315826-CDS-P-fluviatile_contig14:2003713..2003917Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2003714..2003917 -
1622815622.519205-CDS-P-fluviatile_contig14:2005691..20067241622815622.519205-CDS-P-fluviatile_contig14:2005691..2006724Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2005692..2006724 -
1693562504.3251817-CDS-P-fluviatile_contig14:2005691..20067241693562504.3251817-CDS-P-fluviatile_contig14:2005691..2006724Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2005692..2006724 -
1622815622.5286267-CDS-P-fluviatile_contig14:2007101..20072751622815622.5286267-CDS-P-fluviatile_contig14:2007101..2007275Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2007102..2007275 -
1693562504.334228-CDS-P-fluviatile_contig14:2007101..20072751693562504.334228-CDS-P-fluviatile_contig14:2007101..2007275Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2007102..2007275 -
1622815622.5381522-CDS-P-fluviatile_contig14:2007703..20078551622815622.5381522-CDS-P-fluviatile_contig14:2007703..2007855Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2007704..2007855 -
1693562504.3462827-CDS-P-fluviatile_contig14:2007703..20078551693562504.3462827-CDS-P-fluviatile_contig14:2007703..2007855Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2007704..2007855 -
1622815622.5507982-CDS-P-fluviatile_contig14:2008747..20089151622815622.5507982-CDS-P-fluviatile_contig14:2008747..2008915Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2008748..2008915 -
1693562504.3559277-CDS-P-fluviatile_contig14:2008747..20089151693562504.3559277-CDS-P-fluviatile_contig14:2008747..2008915Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2008748..2008915 -
1622815622.5621502-CDS-P-fluviatile_contig14:2009198..20097261622815622.5621502-CDS-P-fluviatile_contig14:2009198..2009726Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2009199..2009726 -
1693562504.3684928-CDS-P-fluviatile_contig14:2009198..20097261693562504.3684928-CDS-P-fluviatile_contig14:2009198..2009726Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 2009199..2009726 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2233.1

>prot_P-fluviatile_contig14.2233.1 ID=prot_P-fluviatile_contig14.2233.1|Name=mRNA_P-fluviatile_contig14.2233.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=977bp
MSELKRKREDDAEGEEADTEAVGCGLPKASIMPSVAPAAEEIAAPAAPAP
STQRMAAAAAADPAPSIGGASITTSEEGVEAAAVAAAAPASSSSPPSAPR
LKKRREETPTVKIVICGKEISVSNPTVRKKRKLPVEAVVTMAYKGQLALA
CKANNMISALKIYREMKSKGVKQDLSTYLMVLALCGGSPGDRDELDPGNG
STCSRVAFSAEAKVEGTSAKDDTHAAAETALQIFSDASNGGTVTLPESAY
TSVIRACCLDGRVDRAREVLEDLKRADVIPRVRTYSPLLEAYAGLGGRLQ
DCMVIWREAVSPANGRQGVTMTEREYLHLIAACTRARDEKCFLEVMAEYM
DDVLQPRSRHSWDVLKAWFAVGPNVIGNGVVENGSEVASGAKPEVESPEE
GEAIDAACPAGETSKHPSGGSGDGEGGHEPQRGDQEIVAAVASAAPEAEE
ALATPAALALAPAPPEAAATGTETSAPPAKTAGRTGTPTLGDGGGEDGAA
AAGVTVTEDTAAAAVAVAAAADSAVDPAAANGAADVQDEYTRESTPSSPS
AIARSSFPRTADANSSTTAPAAERPRLPRSSSPAPVGAQEGGGGDDNHVP
GAGEQASSTRGCGNESDDAMGLDDSKVSPSGGRRGDAGGDDVVSASGSWR
VAECKVGEDGTCENCGEVLRSIELSRDDEQRLLKQIEVLVCTNEQRTKQW
EGYCGWLERRGKGRYNVIIDGANLGYYKQAAFSDGELADLRQVDWAVKKY
EEEGKKPLVVLHSRHLADKRLSEEARTIYKRWKEAETIQSCAPKNNDDWY
WLYAAVYMGGKVLVLTNDEMRDHHFSMLSHRSFQRWKERHQVIPLISSSG
SFQGCCLLWEHSHRALFDWFGARFRRRPSAVCHSQGHLLPLFFLLRSSRS
VHLVMSATHDRRKLREGTHFAVSLLWSHDTFSMHVCSAAYRSAWCLLVFP
TCTPSDPVFHLTVVRTVSLASGMPCLP
back to top

mRNA from alignment at P-fluviatile_contig14:2000921..2009726-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2233.1 ID=mRNA_P-fluviatile_contig14.2233.1|Name=mRNA_P-fluviatile_contig14.2233.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=8806bp|location=Sequence derived from alignment at P-fluviatile_contig14:2000921..2009726- (Porterinema fluviatile SAG_2381)
ATGTCGGAGCTCAAGCGCAAGAGAGAAGATGATGCTGAGGGAGAGGAGGC TGACACGGAAGCTGTCGGTTGCGGTTTACCAAAGGCCTCAATTATGCCGT CCGTTGCTCCGGCAGCGGAGGAGATCGCTGCTCCAGCAGCACCAGCACCA TCAACCCAGCGTATGGCAGCAGCAGCAGCAGCAGACCCAGCACCCAGCAT CGGCGGAGCATCGATTACCACCTCAGAGGAAGGTGTAGAAGCAGCAGCAG TTGCAGCAGCGGCACCAGCGTCCTCTTCTTCGCCTCCGTCGGCTCCCAGG CTGAAGAAACGCAGAGAAGAGACACCAACCGTGAAAATCGTGATATGCGG CAAGGAGATCTCCGTCTCCAACCCGACCGTGCGAAAGAAGCGAAAGCTAC CCGTAGAGGCTGTCGTGACAATGGCCTACAAGGGGCAGCTGGCCCTGGCG TGTAAGGCGAACAACATGATCTCCGCGCTGAAGATCTACCGAGAAATGAA GAGCAAGGGTGTCAAGCAGGATCTGTCGGTGAGAAACTTGCTGCGTCGAG GAGTTGAGGATTGGGTGGTCCTCGTCATGGCTGTACGGCTCCTTGGCGCC ACACCGCAACAGGCAGCGGCTGTTTTTTGCTCCCCACGCATTGCGAGGTT GCCAGCAGCCATGATGAGGACCACCCGGTCGTCAACTCTTCGACTCCAAT AGTGATTCGGCCGCCTTCGTGCACCTTTAACACGCGCCCGCATCATTCGA ACACGCCTCCATCCCCCCTCTCTCCGTCTCCCTCTCCCTCGCTTCTGGCC GCTTGAATCAGACCTACCTTATGGTTCTTGCCCTCTGCGGGGGGTCACCG GGCGATAGGGACGAGCTGGACCCGGGCAACGGCTCAACCTGTTCGCGCGT TGCCTTCTCTGCCGAGGCGAAGGTGGAGGGCACCTCCGCGAAAGACGACA CCCACGCCGCTGCCGAAACGGCTCTACAGGTGCGATCACTCGGGTGGGAG CCAGCGCGGGGGGGGTGTACTCATAGTCGTGCATGCCGTAGTCGTTAGAC CATTGACCTCGCATCCCTACAAAGCCAGGATGGAGCACGCCGGGTTCTCA CCGGACCAGGCTCTCACACCACCAAGCGCGAAGCGCCGTGAGGTATTCGG CGAGTCGCATGAAGGGTGCGCTGCATCCTGCTAAGGGTGTTCGGCATCTT GTGCTTACTTCCTTGCATACGGATGACAGCTGCGTATGGCTTAATTTATT TTCTGGTGCTTTCACTTCCAGAGACAGTTGTAAGCACTGTGTAACTGCCT CGAGGGTGCTTGACCATTTGAACACAACGTGGTGCGATCATCTCCCTTGC GCGGAGTGAGGGTTCTCCACTCCGCACAACATGATGTACTCGACCACCAT TATGGTTACCGCCAAAAAAAACAGAGGAAAATATAAAACGGTAACCTGGT TGCCGAGTTCACGAAGTGAATTGGCTTGTCTTACAACGTCGTTGCCAAGC GACGAAAACCCAATCCCGATGGCAAACACCGAGGTGAGAGCCAGCGGGGG AGGGACGCCAGCGGGGGGGATGGGCAGGAGGGGGTGCGCTTCGCGAGCGC GTGGCATGAAAACTGGCGTTATTTGTTGGTGTCCAATCTAAATATTGGGG GGACTCAACCCATAGCTTGCAGTCCGTGGACCTCCAATGATGAACCTGGG CCCTCCGCCGCTCGGTTGCCGCACGCACATCCCCGTTCCCTCCACTTACT CTCCCTCTTCCTCCCCCTCCCTCCTTGCCGCTGGCCGCTGCCACTCTGTG GTGCGCCCCCGTCGATCGAACGCAATCCCTGTCCCTTTTCATTATCCTCT GTTCATCGAATGGCAGCGCAGATATTTTCTGACGCGTCGAACGGCGGTAC TGTCACTTTGCCCGAGTCAGCGTACACTTCGGTTATTCGTGCGTGCTGCC TGGACGGCAGGGTGGACAGGGCAAGGGAGGTTCTCGAGGACCTCAAGCGG GCGGACGTCATACCCCGCGTCAGGTGCGTTTCTTTTTGGATGGATACCTC GGCTGCCTGCTTCCACTCGCGGGTAAGCACGGCTGGAAGGCAGCAACAAG AACGTCCTGGGCGTGCCGTGCCGGCCGAGCTAGTTCTTGGGTGGACCTCG TCGTGACTTCGCACTCGGCCGGCACGCTCTGATTGCCGCCAGAGTCGAGG AGAGAGGCCGCTTGTCTCTCAGCGACTTCGTATTCTGGGTGCGGCCGTCC CCTGGTCACAAACAAAAAAACTACAAAAACTTTAGGTTTCAACTTGATCA CTCCGTGTCATCGTTTGGCTGCCGGCTCGTGAACGTGGCGCGCTCATCAT CTTGCAGCTGTTAGGCTCGCTACCTTGAATGCGCACGCGCGCCCGAACGA ACGATTGACGCAATCGAGGACGAAACCACTGCCAAACAAACACGAAAGCA GGACGTACTCGCCGCTCCTGGAGGCGTACGCGGGGCTCGGCGGTCGGCTG CAGGACTGCATGGTCATCTGGCGGGAAGCAGTGTCGCCCGCCAACGGCCG TCAGGGAGTGACCATGACGGAACGGGAGTACCTCCACTTGATCGCCGCGT GCACCAGGGCTCGGGACGAAAAGTGGTGAGAGAGCCCCTGGGGAAACGCA GCCTTTCCTGTTCGGTCGTCTCCTTGTGTGCGTTGTGGTGGCTGGCATGT GCTTTTTCTCCTCTTACGCGCCGGACGACGGAGACTCCGGAAGAAGTATT TCTCCTCGCGCCCCTCTCTTGTGTGCGCATGTCTCGTTGGTCCTGTAGAA GAGGGTGAAGAGTGAAGGCAAGGGAAGGGAAGGGATGGACTCCTGAAGCT GATATTTCATTTACCCTCCGCTTACCCTGTCTGCAATTGCCATCATATGG CCATTTGCAGTCTCATCATCGGAATCTTCCTGCCGAGATCCATTCCTTTG AGTTTCTTCTCACTTCTCATGCACGTACGTCGCCCTCTTCCCCCCTCCTT AGCTTTTTGGAAGTCATGGCGGAGTACATGGACGACGTGCTGCAGCCACG CAGTCGGCACAGCTGGGACGTGCTGAAGGCGTGGTTCGCGGTCGGCCCTA ACGTCATCGGCAATGGCGTCGTCGAAAACGGCAGCGAAGTAGCGTCTGGT GCGAAGCCCGAAGTCGAGTCGCCGGAAGAAGGGGAGGCCATCGACGCCGC TTGTCCCGCGGGGGAAACTTCCAAGCATCCTTCTGGCGGCAGCGGCGACG GCGAGGGTGGGCACGAGCCTCAAAGAGGAGACCAAGAAATAGTCGCTGCC GTAGCTTCGGCAGCGCCGGAGGCAGAAGAAGCTCTTGCGACCCCAGCAGC ACTAGCACTTGCACCAGCACCGCCAGAAGCTGCGGCCACGGGAACGGAAA CGTCAGCTCCTCCGGCGAAAACCGCAGGAAGGACGGGTACCCCTACCCTC GGTGATGGTGGCGGTGAAGATGGTGCTGCCGCTGCTGGTGTCACCGTTAC CGAGGACACCGCCGCCGCTGCCGTCGCCGTCGCTGCTGCCGCTGATTCCG CCGTCGATCCTGCTGCTGCTAACGGTGCTGCCGACGTACAGGATGAATAC ACGCGCGAGTCAACGCCGTCGTCGCCAAGCGCGATCGCACGCAGTTCTTT TCCCAGGACCGCCGACGCGAACAGCAGTACAACAGCTCCCGCCGCTGAAC GGCCGCGGTTGCCAAGATCATCGTCTCCGGCCCCTGTCGGTGCCCAGGAA GGCGGTGGCGGCGACGACAACCACGTCCCTGGAGCAGGCGAGCAGGCGTC GAGTACCAGGGGTTGTGGCAACGAGAGCGACGATGCCATGGGATTGGACG ATAGCAAGGTTTCGCCGAGTGGCGGCCGAAGAGGTGACGCTGGCGGTGAC GATGTTGTTTCCGCGAGCGGTAGTTGGAGGGTTGCGGAGTGCAAGGTGGG CGAGGACGGGACGTGCGAGAACTGCGGAGAGGTCCTTCGCTCGATCGAGC TCTCTCGGGACGACGAACAGCGGCTGTTGAAGCAGGTGCGGTGCATCGGT ACTGCGCTCCGATTCAGGTATAGTTCTTTCGTCTATTCTTCTGTCTCATG TTTGGCTGGCGGCATTCGCGCTGCGGTTTCTATCACGCTGCAACCCCACC TTGACTTATTCCGCAGGACGCATCCGTTAGCCAAGCACGAGGTTTCTCGG GGGCAATTTTTTTTGTTGAAGGCATTTCAGCCTAGGACTTTGTCGTTTGT CTGTCAAAAAAGTGTTCGGGAAACACTTCGACGGCTCCGGCCCGAACTCT GCGACATGAAACAACAGCGGCCGCCGCTTTCGTCGTTTAGACCACGAACA AGTTTGCACCTCCCGACGTCGGCCCCAGTGACTGCATCGATATTAGCTCT ATCGGACGGGTCCTCAAATAGCCCGAACGGACGAAATCAATCGTGAGGAG GGGTGACGCGTAAAGAGCGGTGTCTCCTGTGGTGAATGTGCGGCAGTTTT GGCCAATGTGGCTTTGAGTCCTGAACGGCGTTTGTTTTTTCCCTTCTGGA GCCTCTGCTGTTCCCCCTGTGACTGCATCCAAAAGAGCTCTAAAGGACGG GTCCTCAACTACCCTGGTTTTGACAAATTTATCGTGAGGAGGGGTAAGAA GATTTCATGTATTTCCCGTCCGTGCCACGTGATGTGCAACAGCGGCCTGC GGTCAACATTCCTGTTGCATAAATCTGAACACTCTCCAAGGTATTCTCGC GCTTCCCCAGTGACTATATCGATAGTAGCTCTATCGGACGGGTCCTCAAA TAGCCCGGATTGACGAGAAGAATCATGAGGAGGGGTAAAAGCGTAGGAAT TGTCGCCCAAGATCACCATCGATGCGATCTCTCTTACCAAGCCAAAAATG GTCTGTTGAAAATTGACGCCACCGTCGAAGCTTGCGATAGGAGCGTCCTC GAAATCTTGGCACGAAGCCAACACGAGGAAGATGAGAGATAGACGAGGGG TGAAGGGCGGCTGTTAGGATGGGAGGAGAGAGAACGGCAGACATGCAGGC AGATAGAGAGAGATGAAAAGTCACGATTCTTCCGTTACAGAATCATGACG TTTGTAGCAATACCCTCTAGCCTTGCAATCCTGGGGATGCCTTCCTGATA AGTGGTTCACCTCAGGACATAAAGCCCCCCTATTCGTTGCGCGCCAAAAT GGTGAGCGCAACGCAAAATTGCCCGATCTCTTCTCCCTCGTCATGCGCTC TGTTTTCATCGTTTTTCCTGATGATTGCAACGATTAAATGCTCTATCGAT CGGATACCTCGAGGCCTACATCCCCGAGACCCATGTCGAGAACCAACATC GTGCACTTTTTTTGGTGTGATGAAGGAAAAGAAACAGCAGCGCACTTTTT TTTTAGTGTGTATTTTCGTGAGCTTGAAGAGTAACAGTGGTTCATCTTCG TGCACATCCATATGAGCAGCAGTCTTTGCTGCTCGCTTTATTTCAGTGCG TAAATTTGTAAGCGCTGCGGGATTCTCGTCCCTTTGCGGACATCGTAGTG GCGGCCTTGGACAGCTTACGATCTGTCAAGTCTGCGGTTATAGGGAGGTT CGGCTCCAGTGGGCTGGAACGAAAACGAAATGTCTTTTATTGCGTGACGG TGAAGCATTCCTTCGGAGGGACAAGCGGTGAACAATGAGCCATCCCCACC CCCCAGGGCTTCCCCCTCACCTAAGTACACCCATGTGCCCGCCCCCCCCA CTCTCGCGCCGTATGTCTGGCCCCGTCCCCGCCTCCCCCTCCGCCTCTCC ACGCCGCAGATAGAAGTTCTGGTTTGCACCAACGAGCAGCGCACGAAGCA GTGGGAGGGGTACTGTGGGTGGCTGGAGCGGCGCGGGAAGGGCCGCTACA ACGTCATCATCGACGGGGCCAACCTGGGGTACTACAAGCAGGCAGCCTTT AGCGACGGCGAGCTCGCCGACCTGCGGCAGGTGGACTGGGCCGTCAAGAA GTACGAGGAGGAGGTAATGAAGGACAGCACAGAGCATCGAGCGAGCCAGC GATAGAGAGGACGAGCATTGCGAGCTGCAAAGGGGAAGCAAATATGAAGA TGTAGACTATGCTGTTGGGACGGATTCGTTACTCAACCGGCCTCTTTTCA TTTTTTGAGTTGTTCTGCCGATGACGAATAGCCAAATTTCGCTTTCACGG AGGGAGGGGACGGGAGGTGAGGGGTCGGATGCACACGCGAAAGCGCTCTC TTTCTTCATCGCCCCTGCCCCTCCTGCATGCGCGACCCTTACGCTGCGTT CTTTCCGAGGCAAGGCAAGTCAGTAGACAAAGGGGGCCGCCTAGCTGATG GTTGCAGGACTGTGTGCGGGATGAGAGATGTTGTGCTTGGTGTGTGATTT TCTAGGTGGAAAGAGCAGCCGCAGCGGTTTTCGTATTATCGAGAAATGCC GTTTTTACAGCGGTTTCCTTTTTTCGTCTTGCGTGTCGATCTGTACCTTC GTAGGGAAGTGGAGAGGTTGGAGGAGAGTCGTGAGAGGGCATGGGCAGCG CGAAGCGTTACAAGTCTTCCCGCTCGACAACGACAGGCGAAAACTTTCGG CTCATCTTCTGCGATTCTTTTTCGTGTGCGAAACGGCGAAAATTAGAGTT TCGCCCCGCCCCGTGTGCTCGTGTGCGCATTGTTGGCTTTCCGCCGCCCC GTGCGGCCTTATCCCCTCCCGCTGGCTCTCACCTCGGTGTTTGCCATCGG GATTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCAATTCAC TTCGTGAACTCGGCAACCAGGTTACCGTTTTATATTTTCCTCTGTTTTTT TTGGCGGTAACCATAATGGTGGTCGAGTACATCATGTTGTGCGGTGTGGA GAACCCTCACTCCGCGCAAGGGAGATGATCGCACCACGTTGTGTTCAAAT GGTCAAGCACCCTCGATGCAGTTGCACATTGCTCACAGTTGTCTCTGGAA GTGAAAGCACCAGAAAATAAATTAAGCCATACGCAGCTGTCATCCGTATG CAAGGAAGTAAGCACAAGATGCCGAACACCCTTAGCAGGATGCAGCGCAC CCTTCATGCGACTCGCCGAATACCTCACGGCGCTTCGCGCTTGGTGGTGT GAGAGCCTGGTCCGGTGAGAACCCGGCGTGCTCCATCCTGGCTTTGTAGG GATGCGAGGTCAATGGTCTAACGACTACGGCATGCACGACTCTGAGTACA CCCCCGTGCGGCCTTACGTTACGCGGTCTCTTGTCTATCTGACTTCCTCA CCTCGCCTCCCCCTCCCCTCCCTACGCGCTCGCGCCTCTCCTGCTTATTG CCGGCGCTGTGCTTGGTATGCCGGTGCTGTTCAATACACCCCCTACAGGG GAAGAAGCCGTTGGTCGTGTTGCACAGCCGGCACCTGGCGGACAAGCGGC TGTCCGAAGAAGCCAGGACGATTTACAAGCGGTGAGAGGGAGACTTCAGC TGCGCGTTGATGGCGTTAGTCGGTAGTCCCAGAAGGTGGTCCGCTCGTGG GACTTCTTCTCTTTTCGTCTCTTCCCTTTTCGGCCGAAGGATTCGAAAAC CGCCCAACCATGCTTCCTTGTGTTGAAGAAGCCTCGACCCGTGCCCAATT TAGGGGCACCCCTGGATTTCCGTTCGTGCGGCCCCTTGTCCGAATGCTCA CGTGGAAGATGATGGCCCGACGTTCCTCCCGTTGGTTTCACTCGCGCGGG CCGTTCCTCACGGGGTCCGCGAGTCAACGTCATCTATTGTCAACGCCGCC ATCTATAGTCAACGCTGTCATCCATAGTCAACACCGCCATCTAGAGTCAG CGCCGTCGTCTATTAGCCAGCGGTCTGTCCTTTCCAATCCTTCAGAAGTG GAGGTTTGCTCAGAAAATAATATTAGATGTGACGAAAGGCGGACCCGTTT CTTATATTCTTACCTCACACCGTACAAAAATGATTGTTTGGCCGAGGCGA AAGCAGTCGTGAAGGCTGCGTAACTTCTCGTTCAAACCTTACGCGCAGAA GGTCAACAAGTATCCAATTATCGTCGGCACTTCACGCGCACTAGAGCGAA AATCCCGAATTATAGCACATATGCACAATTCTCGCTCACCTCGCCACCTC CATTCCTGGCCCAGGCGCAACTTATGCTCTGTGAAAAAACGAATAATGTA AACACAATTAAAAAAAGGTGGAAGGAAGCGGAAACTATTCAGTCTTGTGC GCCGAAGAACAACGACGACTGGTACTGGCTGTACGCGGCTGTGTACATGG GGGGCAAGGTGCTGGTGCTCACCAACGACGAGATGAGGGATCACCACTTC TCCATGCTCTCGCACCGCTCGTTCCAGAGGTGGAAGGAAAGGCACCAGGT GATTCCACTGATATCATCGTCGGGTTCATTTCAGGGCTGTTGCTTGTTGT GGGAGCACAGTCATCGGGCTCTATTTGATTGGTTTGGAGCGCGTTTTCGC CGTCGACCAAGTGCTGTTTGTCACTCGCAAGGTCACTTACTGCCGCTGTT CTTTTTGCTTCGGAGCAGCAGATCTGTTCACCTCGTCATGTCGGCCACAC ACGATAGGCGAAAACTTCGGGAAGGTACCCATTTCGCGGTTTCCTTGCTA TGGAGTCACGACACTTTCAGCATGCATGTTTGTTCCGCTGCCTATCGCTC TGCCTGGTGTTTATTGGTATTTCCGACTTGTACGCCTAGCGATCCAGTGT TTCATCTTACCGTCGTCCGGACGGTCTCTCTCGCTTCCGGTATGCCGTGC TTGCCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig14:2000921..2009726-

>mRNA_P-fluviatile_contig14.2233.1 ID=mRNA_P-fluviatile_contig14.2233.1|Name=mRNA_P-fluviatile_contig14.2233.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=5862bp|location=Sequence derived from alignment at P-fluviatile_contig14:2000921..2009726- (Porterinema fluviatile SAG_2381)
ATGTCGGAGCTCAAGCGCAAGAGAGAAGATGATGCTGAGGGAGAGGAGGC
TGACACGGAAGCTGTCGGTTGCGGTTTACCAAAGGCCTCAATTATGCCGT
CCGTTGCTCCGGCAGCGGAGGAGATCGCTGCTCCAGCAGCACCAGCACCA
TCAACCCAGCGTATGGCAGCAGCAGCAGCAGCAGACCCAGCACCCAGCAT
CGGCGGAGCATCGATTACCACCTCAGAGGAAGGTGTAGAAGCAGCAGCAG
TTGCAGCAGCGGCACCAGCGTCCTCTTCTTCGCCTCCGTCGGCTCCCAGG
CTGAAGAAACGCAGAGAAGAGACACCAACCGTGAAAATCGTGATATGCGG
CAAGGAGATCTCCGTCTCCAACCCGACCGTGCGAAAGAAGCGAAAGCTAC
CCGTAGAGGCTGTCGTGACAATGGCCTACAAGGGGCAGCTGGCCCTGGCG
TGTAAGGCGAACAACATGATCTCCGCGCTGAAGATCTACCGAGAAATGAA
GAGCAAGGGTGTCAAGCAGGATCTGTCGATGTCGGAGCTCAAGCGCAAGA
GAGAAGATGATGCTGAGGGAGAGGAGGCTGACACGGAAGCTGTCGGTTGC
GGTTTACCAAAGGCCTCAATTATGCCGTCCGTTGCTCCGGCAGCGGAGGA
GATCGCTGCTCCAGCAGCACCAGCACCATCAACCCAGCGTATGGCAGCAG
CAGCAGCAGCAGACCCAGCACCCAGCATCGGCGGAGCATCGATTACCACC
TCAGAGGAAGGTGTAGAAGCAGCAGCAGTTGCAGCAGCGGCACCAGCGTC
CTCTTCTTCGCCTCCGTCGGCTCCCAGGCTGAAGAAACGCAGAGAAGAGA
CACCAACCGTGAAAATCGTGATATGCGGCAAGGAGATCTCCGTCTCCAAC
CCGACCGTGCGAAAGAAGCGAAAGCTACCCGTAGAGGCTGTCGTGACAAT
GGCCTACAAGGGGCAGCTGGCCCTGGCGTGTAAGGCGAACAACATGATCT
CCGCGCTGAAGATCTACCGAGAAATGAAGAGCAAGGGTGTCAAGCAGGAT
CTGTCGACCTACCTTATGGTTCTTGCCCTCTGCGGGGGGTCACCGGGCGA
TAGGGACGAGCTGGACCCGGGCAACGGCTCAACCTGTTCGCGCGTTGCCT
TCTCTGCCGAGGCGAAGGTGGAGGGCACCTCCGCGAAAGACGACACCCAC
GCCGCTGCCGAAACGGCTCTACAGACCTACCTTATGGTTCTTGCCCTCTG
CGGGGGGTCACCGGGCGATAGGGACGAGCTGGACCCGGGCAACGGCTCAA
CCTGTTCGCGCGTTGCCTTCTCTGCCGAGGCGAAGGTGGAGGGCACCTCC
GCGAAAGACGACACCCACGCCGCTGCCGAAACGGCTCTACAGATATTTTC
TGACGCGTCGAACGGCGGTACTGTCACTTTGCCCGAGTCAGCGTACACTT
CGGTTATTCGTGCGTGCTGCCTGGACGGCAGGGTGGACAGGGCAAGGGAG
GTTCTCGAGGACCTCAAGCGGGCGGACGTCATACCCCGCGTCAGATATTT
TCTGACGCGTCGAACGGCGGTACTGTCACTTTGCCCGAGTCAGCGTACAC
TTCGGTTATTCGTGCGTGCTGCCTGGACGGCAGGGTGGACAGGGCAAGGG
AGGTTCTCGAGGACCTCAAGCGGGCGGACGTCATACCCCGCGTCAGGACG
TACTCGCCGCTCCTGGAGGCGTACGCGGGGCTCGGCGGTCGGCTGCAGGA
CTGCATGGTCATCTGGCGGGAAGCAGTGTCGCCCGCCAACGGCCGTCAGG
GAGTGACCATGACGGAACGGGAGTACCTCCACTTGATCGCCGCGTGCACC
AGGGCTCGGGACGAAAAGTGGACGTACTCGCCGCTCCTGGAGGCGTACGC
GGGGCTCGGCGGTCGGCTGCAGGACTGCATGGTCATCTGGCGGGAAGCAG
TGTCGCCCGCCAACGGCCGTCAGGGAGTGACCATGACGGAACGGGAGTAC
CTCCACTTGATCGCCGCGTGCACCAGGGCTCGGGACGAAAAGTGCTTTTT
GGAAGTCATGGCGGAGTACATGGACGACGTGCTGCAGCCACGCAGTCGGC
ACAGCTGGGACGTGCTGAAGGCGTGGTTCGCGGTCGGCCCTAACGTCATC
GGCAATGGCGTCGTCGAAAACGGCAGCGAAGTAGCGTCTGGTGCGAAGCC
CGAAGTCGAGTCGCCGGAAGAAGGGGAGGCCATCGACGCCGCTTGTCCCG
CGGGGGAAACTTCCAAGCATCCTTCTGGCGGCAGCGGCGACGGCGAGGGT
GGGCACGAGCCTCAAAGAGGAGACCAAGAAATAGTCGCTGCCGTAGCTTC
GGCAGCGCCGGAGGCAGAAGAAGCTCTTGCGACCCCAGCAGCACTAGCAC
TTGCACCAGCACCGCCAGAAGCTGCGGCCACGGGAACGGAAACGTCAGCT
CCTCCGGCGAAAACCGCAGGAAGGACGGGTACCCCTACCCTCGGTGATGG
TGGCGGTGAAGATGGTGCTGCCGCTGCTGGTGTCACCGTTACCGAGGACA
CCGCCGCCGCTGCCGTCGCCGTCGCTGCTGCCGCTGATTCCGCCGTCGAT
CCTGCTGCTGCTAACGGTGCTGCCGACGTACAGGATGAATACACGCGCGA
GTCAACGCCGTCGTCGCCAAGCGCGATCGCACGCAGTTCTTTTCCCAGGA
CCGCCGACGCGAACAGCAGTACAACAGCTCCCGCCGCTGAACGGCCGCGG
TTGCCAAGATCATCGTCTCCGGCCCCTGTCGGTGCCCAGGAAGGCGGTGG
CGGCGACGACAACCACGTCCCTGGAGCAGGCGAGCAGGCGTCGAGTACCA
GGGGTTGTGGCAACGAGAGCGACGATGCCATGGGATTGGACGATAGCAAG
GTTTCGCCGAGTGGCGGCCGAAGAGGTGACGCTGGCGGTGACGATGTTGT
TTCCGCGAGCGGTAGTTGGAGGGTTGCGGAGTGCAAGGTGGGCGAGGACG
GGACGTGCGAGAACTGCGGAGAGGTCCTTCGCTCGATCGAGCTCTCTCGG
GACGACGAACAGCGGCTGTTGAAGCAGCTTTTTGGAAGTCATGGCGGAGT
ACATGGACGACGTGCTGCAGCCACGCAGTCGGCACAGCTGGGACGTGCTG
AAGGCGTGGTTCGCGGTCGGCCCTAACGTCATCGGCAATGGCGTCGTCGA
AAACGGCAGCGAAGTAGCGTCTGGTGCGAAGCCCGAAGTCGAGTCGCCGG
AAGAAGGGGAGGCCATCGACGCCGCTTGTCCCGCGGGGGAAACTTCCAAG
CATCCTTCTGGCGGCAGCGGCGACGGCGAGGGTGGGCACGAGCCTCAAAG
AGGAGACCAAGAAATAGTCGCTGCCGTAGCTTCGGCAGCGCCGGAGGCAG
AAGAAGCTCTTGCGACCCCAGCAGCACTAGCACTTGCACCAGCACCGCCA
GAAGCTGCGGCCACGGGAACGGAAACGTCAGCTCCTCCGGCGAAAACCGC
AGGAAGGACGGGTACCCCTACCCTCGGTGATGGTGGCGGTGAAGATGGTG
CTGCCGCTGCTGGTGTCACCGTTACCGAGGACACCGCCGCCGCTGCCGTC
GCCGTCGCTGCTGCCGCTGATTCCGCCGTCGATCCTGCTGCTGCTAACGG
TGCTGCCGACGTACAGGATGAATACACGCGCGAGTCAACGCCGTCGTCGC
CAAGCGCGATCGCACGCAGTTCTTTTCCCAGGACCGCCGACGCGAACAGC
AGTACAACAGCTCCCGCCGCTGAACGGCCGCGGTTGCCAAGATCATCGTC
TCCGGCCCCTGTCGGTGCCCAGGAAGGCGGTGGCGGCGACGACAACCACG
TCCCTGGAGCAGGCGAGCAGGCGTCGAGTACCAGGGGTTGTGGCAACGAG
AGCGACGATGCCATGGGATTGGACGATAGCAAGGTTTCGCCGAGTGGCGG
CCGAAGAGGTGACGCTGGCGGTGACGATGTTGTTTCCGCGAGCGGTAGTT
GGAGGGTTGCGGAGTGCAAGGTGGGCGAGGACGGGACGTGCGAGAACTGC
GGAGAGGTCCTTCGCTCGATCGAGCTCTCTCGGGACGACGAACAGCGGCT
GTTGAAGCAGATAGAAGTTCTGGTTTGCACCAACGAGCAGCGCACGAAGC
AGTGGGAGGGGTACTGTGGGTGGCTGGAGCGGCGCGGGAAGGGCCGCTAC
AACGTCATCATCGACGGGGCCAACCTGGGGTACTACAAGCAGGCAGCCTT
TAGCGACGGCGAGCTCGCCGACCTGCGGCAGGTGGACTGGGCCGTCAAGA
AGTACGAGGAGGAGATAGAAGTTCTGGTTTGCACCAACGAGCAGCGCACG
AAGCAGTGGGAGGGGTACTGTGGGTGGCTGGAGCGGCGCGGGAAGGGCCG
CTACAACGTCATCATCGACGGGGCCAACCTGGGGTACTACAAGCAGGCAG
CCTTTAGCGACGGCGAGCTCGCCGACCTGCGGCAGGTGGACTGGGCCGTC
AAGAAGTACGAGGAGGAGGGGAAGAAGCCGTTGGTCGTGTTGCACAGCCG
GCACCTGGCGGACAAGCGGCTGTCCGAAGAAGCCAGGACGATTTACAAGC
GGGGAAGAAGCCGTTGGTCGTGTTGCACAGCCGGCACCTGGCGGACAAGC
GGCTGTCCGAAGAAGCCAGGACGATTTACAAGCGGTGGAAGGAAGCGGAA
ACTATTCAGTCTTGTGCGCCGAAGAACAACGACGACTGGTACTGGCTGTA
CGCGGCTGTGTACATGGGGGGCAAGGTGCTGGTGCTCACCAACGACGAGA
TGAGGGATCACCACTTCTCCATGCTCTCGCACCGCTCGTTCCAGAGGTGG
AAGGAAAGGCACCAGGTGATTCCACTGATATCATCGTCGGGTTCATTTCA
GGGCTGTTGCTTGTTGTGGGAGCACAGTCATCGGGCTCTATTTGATTGGT
TTGGAGCGCGTTTTCGCCGTCGACCAAGTGCTGTTTGTCACTCGCAAGGT
CACTTACTGCCGCTGTTCTTTTTGCTTCGGAGCAGCAGATCTGTTCACCT
CGTCATGTCGGCCACACACGATAGGCGAAAACTTCGGGAAGGTACCCATT
TCGCGGTTTCCTTGCTATGGAGTCACGACACTTTCAGCATGCATGTTTGT
TCCGCTGCCTATCGCTCTGCCTGGTGTTTATTGGTATTTCCGACTTGTAC
GCCTAGCGATCCAGTGTTTCATCTTACCGTCGTCCGGACGGTCTCTCTCG
CTTCCGGTATGCCGTGCTTGCCCGTGGAAGGAAGCGGAAACTATTCAGTC
TTGTGCGCCGAAGAACAACGACGACTGGTACTGGCTGTACGCGGCTGTGT
ACATGGGGGGCAAGGTGCTGGTGCTCACCAACGACGAGATGAGGGATCAC
CACTTCTCCATGCTCTCGCACCGCTCGTTCCAGAGGTGGAAGGAAAGGCA
CCAGGTGATTCCACTGATATCATCGTCGGGTTCATTTCAGGGCTGTTGCT
TGTTGTGGGAGCACAGTCATCGGGCTCTATTTGATTGGTTTGGAGCGCGT
TTTCGCCGTCGACCAAGTGCTGTTTGTCACTCGCAAGGTCACTTACTGCC
GCTGTTCTTTTTGCTTCGGAGCAGCAGATCTGTTCACCTCGTCATGTCGG
CCACACACGATAGGCGAAAACTTCGGGAAGGTACCCATTTCGCGGTTTCC
TTGCTATGGAGTCACGACACTTTCAGCATGCATGTTTGTTCCGCTGCCTA
TCGCTCTGCCTGGTGTTTATTGGTATTTCCGACTTGTACGCCTAGCGATC
CAGTGTTTCATCTTACCGTCGTCCGGACGGTCTCTCTCGCTTCCGGTATG
CCGTGCTTGCCC
back to top