mRNA_P-fluviatile_contig14.2221.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2221.1
Unique NamemRNA_P-fluviatile_contig14.2221.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2221.1 vs. uniprot
Match: D7FNQ1_ECTSI (Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ1_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 8.780e-73
Identity = 144/240 (60.00%), Postives = 164/240 (68.33%), Query Frame = 3 
Query:  186 VNEGGHINAPLNHSVAETWTPLMLACAEGNVALVRAIIEVGGARASASVGTKVLASSKPLHVAARYGHAGVASVLLELGAVVDARDSTGLTXXXXXXXXXXXXXXXXXXXXXXXXXATASPPPSGSSSGGTTPSGETTAIDMADMAGFDDAAALLRSQASVAEARGAAAGR-KALGSWLEAVGCGEYLGRFLRAGYDDLSFMASQGITEEDLDCVGVPREKLGLRKKLSAMHGVERFLDA 902
            +++GG I+APL  SVAETWTPL LACAEG V LVRAI+E+GGAR S S  TKVLASS PLHVA+RYGHAGVA+VLLELGAVVDARD+ G T                         ++   P +              A+DMA+MAGFDDAA LLRS+A   E  G A  R K L SWL  +GC E+LGRFLRAGYDDL FMASQG+TE DLDCVGVP +KLGLRKKL AMHGVE FL+A
Sbjct:   23 LSQGGTIDAPLLRSVAETWTPLALACAEGRVELVRAIVEIGGARPSFSAQTKVLASSSPLHVASRYGHAGVAAVLLELGAVVDARDTFGFTPLCYAAGNGHLKTIEVLLEAGADASSSFEAPYAAK------------ALDMAEMAGFDDAATLLRSRALAGEDGGEAVRRRKTLASWLGVLGCREFLGRFLRAGYDDLQFMASQGLTEADLDCVGVPGDKLGLRKKLLAMHGVEGFLNA 250
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BLAST of mRNA_P-fluviatile_contig14.2221.1 vs. uniprot
Match: A0A482UJW8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UJW8_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 2.150e-10
Identity = 31/56 (55.36%), Postives = 44/56 (78.57%), Query Frame = 3 
Query:  726 VGCGEYLGRFLRAGYDDLSFMASQGITEEDLDCVGVPREKLGLRKKLSAMHGVERF 893
            +G  EYL RFL AGYD L F+ + G+++ DLDC+GVP  K+GLR+K+S +HG++RF
Sbjct:   10 LGGSEYLQRFLDAGYD-LPFIHTHGLSDVDLDCIGVPVNKMGLRRKMSKLHGLDRF 64
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FNQ1_ECTSI8.780e-7360.00Chain A, Crystal Structure Of A Designed Full Cons... [more]
A0A482UJW8_9ARCH2.150e-1055.36Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:1880964..1883229 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score216.1
Seed ortholog evalue2.3e-53
Seed eggNOG ortholog2880.D7FNQ1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-01_004680.1
Exons2
Model size1768
Cds size918
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2221.1prot_P-fluviatile_contig14.2221.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 1881563..1882480 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.924194-UTR-P-fluviatile_contig14:1880963..18815621622815620.924194-UTR-P-fluviatile_contig14:1880963..1881562Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1880964..1881562 -
1693562480.3754284-UTR-P-fluviatile_contig14:1880963..18815621693562480.3754284-UTR-P-fluviatile_contig14:1880963..1881562Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1880964..1881562 -
1622815620.9514613-UTR-P-fluviatile_contig14:1882480..18826471622815620.9514613-UTR-P-fluviatile_contig14:1882480..1882647Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1882481..1882647 -
1693562480.3958926-UTR-P-fluviatile_contig14:1882480..18826471693562480.3958926-UTR-P-fluviatile_contig14:1882480..1882647Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1882481..1882647 -
1622815620.9657097-UTR-P-fluviatile_contig14:1883145..18832291622815620.9657097-UTR-P-fluviatile_contig14:1883145..1883229Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1883146..1883229 -
1693562480.405366-UTR-P-fluviatile_contig14:1883145..18832291693562480.405366-UTR-P-fluviatile_contig14:1883145..1883229Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 1883146..1883229 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.9380546-CDS-P-fluviatile_contig14:1881562..18824801622815620.9380546-CDS-P-fluviatile_contig14:1881562..1882480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1881563..1882480 -
1693562480.3868937-CDS-P-fluviatile_contig14:1881562..18824801693562480.3868937-CDS-P-fluviatile_contig14:1881562..1882480Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 1881563..1882480 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2221.1

>prot_P-fluviatile_contig14.2221.1 ID=prot_P-fluviatile_contig14.2221.1|Name=mRNA_P-fluviatile_contig14.2221.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=306bp
MLACAEGNVALVRAIIEVGGARASASVGTKVLASSKPLHVAARYGHAGVA
SVLLELGAVVDARDSTGLTPLHYAAGNGHLRAIEVLLGAGAAADATASPP
PSGSSSGGTTPSGETTAIDMADMAGFDDAAALLRSQASVAEARGAAAGRK
ALGSWLEAVGCGEYLGRFLRAGYDDLSFMASQGITEEDLDCVGVPREKLG
LRKKLSAMHGVERFLDATRGGRSSSSGGADGALTAETASQSEGEVSSSGS
RDDDNDDDEEAGSDESEDVEESARGSGSSGSDGEEPSSSNGGSDGDSDTD
SESDA*
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mRNA from alignment at P-fluviatile_contig14:1880964..1883229-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2221.1 ID=mRNA_P-fluviatile_contig14.2221.1|Name=mRNA_P-fluviatile_contig14.2221.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2266bp|location=Sequence derived from alignment at P-fluviatile_contig14:1880964..1883229- (Porterinema fluviatile SAG_2381)
GAGAGCGGGGTGAAGGGGGGAGAGGCTCACGACGGGGTGGATCCCTTGGG
GAGAACGGAGAACGGCGTGTACCTGGAGAAATTGGTACGGTCCGAGGTGT
GAGCAGGCAGACACAGGTGTTGGGGGTTTGCGCGTGCACACCTTATTTGC
CGTTATGCACCCGAACAAGCGTATGCGTATCCGTCTTTTTGAGCAACTGA
TCACGTCGTTCACGAAGCGTGTAGTGCTGGTTCGTGTGAACCCTTTGTGT
GTGTACACATGCTTCACGTGTGTATGTACACACGCGTGACATGCTCGTGC
ACGGCTCCCGTTCCTTCTACCGTACAAGTACTGTTTTCCTCTGGTGTGTC
CCGCAATGCAAGCGAGAGCGAAATTCCAGGCAGGGTATTCCGAATTCCCT
ACGGGATCATTCGAATGGAGAGTCGGTGTACGGGTGTGCTTTAGGCGAAG
ACCCAGTGCTTAATCCACGAAACACAGACCAACGGGTGCGTACTTCAGAA
CGAGTAGGGTACATCGAGTCACCTGTCCTTCAGCTGCTTACATTTCTTCC
GGCCCCTCCGCCTGCCATTGCATGCTGCGCAGAACGTACGGAGAAGGTCT
TGATTAGATGAGACAATGATCGAAGCGCCAGTCTTCCCCTACCAGGAAAC
CCGCCGAGGAGACACGTCCGCACTCCGGGACTGGTTAACGAAGGAGGGCA
CATCAACGCGCCTCTAAATCACTCTGTCGCGGAAACTTGGACGCCTCTGA
TGCTGGCCTGTGCGGAAGGGAACGTCGCCCTGGTCCGCGCCATCATCGAA
GTCGGCGGCGCGAGAGCGTCCGCGAGCGTCGGCACGAAGGTTCTGGCCAG
CTCCAAGCCCCTGCACGTCGCCGCGCGCTACGGCCACGCCGGCGTGGCGT
CCGTCCTGCTGGAGCTTGGCGCCGTCGTCGACGCCCGGGACTCGACGGGC
CTGACGCCGCTGCACTATGCCGCCGGGAACGGCCACCTGAGGGCGATAGA
GGTGCTACTCGGGGCAGGGGCGGCGGCAGACGCCACTGCTTCTCCCCCTC
CGTCTGGCAGCTCCTCCGGCGGCACAACCCCCAGCGGAGAAACGACGGCG
ATAGACATGGCGGACATGGCGGGCTTCGACGACGCGGCGGCTCTGCTGAG
GAGCCAGGCCTCGGTGGCAGAGGCCAGGGGCGCGGCAGCCGGTAGGAAGG
CGCTCGGATCGTGGCTCGAGGCGGTCGGGTGCGGGGAGTACCTTGGACGT
TTCTTGAGGGCAGGTTACGACGATCTTTCGTTCATGGCGTCACAAGGGAT
CACCGAGGAGGACTTGGACTGCGTCGGCGTGCCGAGGGAGAAGCTTGGCC
TGAGAAAGAAGCTGTCGGCCATGCATGGCGTCGAAAGGTTTTTGGACGCA
ACCAGAGGAGGCAGGAGCAGCAGCAGCGGTGGCGCTGATGGCGCGTTGAC
GGCCGAGACGGCCAGTCAGAGCGAGGGGGAGGTAAGCAGCTCCGGCAGTC
GTGATGATGACAATGATGACGATGAGGAAGCTGGAAGTGACGAAAGTGAA
GACGTCGAGGAATCAGCGCGCGGCAGCGGTAGCAGCGGTAGTGACGGAGA
GGAGCCTAGCAGCAGCAATGGCGGCAGCGATGGCGACAGCGATACGGACT
CGGAGAGCGACGCTTGAAAGAAGCAACGATTCAGCGAATTTGGGGTGGAT
CGATTCAAAGTTGACATTTCTTTGTGGGAAATTTCACGCGGTTTCTCATC
ACACTTTTCGCAAAGACACAGCCGTAAGGCTTGTATCGGTAGGCCTTTCG
CTCGACCGTAAAGAAGTTCATGTATATCAAGGCAGGTTCTACAACGCCCC
GCTAATGAGAGATCAAAGAGAGAGCAGAACGTGCCGACATGCGAGGAAGG
ATCGAAAATTAGGATTCACGACCCAGAGTATGTCTTATTGCCGGGGGCTT
GTCCGCTGCAAGTGTGACGAACAAAGTAGAGTACGACGGTGGGAACCGAA
CGCTTCGGTGCGTGTAATTCGTTGTACGGTAGAAGACTTTCTTTTTGTGC
AAGCTGTTCTCCCCACTGTGTGGAGAGCACCTTCTGCGAGTGGTAGTCCC
ACTCTTATCCTGTGCAACTTTGTTTTGCTGCGTTCAGCACAGCGACGGAA
GGCGGTAGTGTGGACTCCACTCTTGGGAGGATGCGATCCTGTTGAAATAT
TTTTTCCGTCACTCGACCCACCTTCACCAAAACGATGGGTTAATGAGGCC
GCTTCATGGACGACGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:1880964..1883229-

>mRNA_P-fluviatile_contig14.2221.1 ID=mRNA_P-fluviatile_contig14.2221.1|Name=mRNA_P-fluviatile_contig14.2221.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1836bp|location=Sequence derived from alignment at P-fluviatile_contig14:1880964..1883229- (Porterinema fluviatile SAG_2381)
ATGCTGGCCTGTGCGGAAGGGAACGTCGCCCTGGTCCGCGCCATCATCGA
AGTCGGCGGCGCGAGAGCGTCCGCGAGCGTCGGCACGAAGGTTCTGGCCA
GCTCCAAGCCCCTGCACGTCGCCGCGCGCTACGGCCACGCCGGCGTGGCG
TCCGTCCTGCTGGAGCTTGGCGCCGTCGTCGACGCCCGGGACTCGACGGG
CCTGACGCCGCTGCACTATGCCGCCGGGAACGGCCACCTGAGGGCGATAG
AGGTGCTACTCGGGGCAGGGGCGGCGGCAGACGCCACTGCTTCTCCCCCT
CCGTCTGGCAGCTCCTCCGGCGGCACAACCCCCAGCGGAGAAACGACGGC
GATAGACATGGCGGACATGGCGGGCTTCGACGACGCGGCGGCTCTGCTGA
GGAGCCAGGCCTCGGTGGCAGAGGCCAGGGGCGCGGCAGCCGGTAGGAAG
GCGCTCGGATCGTGGCTCGAGGCGGTCGGGTGCGGGGAGTACCTTGGACG
TTTCTTGAGGGCAGGTTACGACGATCTTTCGTTCATGGCGTCACAAGGGA
TCACCGAGGAGGACTTGGACTGCGTCGGCGTGCCGAGGGAGAAGCTTGGC
CTGAGAAAGAAGCTGTCGGCCATGCATGGCGTCGAAAGGTTTTTGGACGC
AACCAGAGGAGGCAGGAGCAGCAGCAGCGGTGGCGCTGATGGCGCGTTGA
CGGCCGAGACGGCCAGTCAGAGCGAGGGGGAGGTAAGCAGCTCCGGCAGT
CGTGATGATGACAATGATGACGATGAGGAAGCTGGAAGTGACGAAAGTGA
AGACGTCGAGGAATCAGCGCGCGGCAGCGGTAGCAGCGGTAGTGACGGAG
AGGAGCCTAGCAGCAGCAATGGCGGCAGCGATGGCGACAGCGATACGGAC
TCGGAGAGCGACGCTTGAATGCTGGCCTGTGCGGAAGGGAACGTCGCCCT
GGTCCGCGCCATCATCGAAGTCGGCGGCGCGAGAGCGTCCGCGAGCGTCG
GCACGAAGGTTCTGGCCAGCTCCAAGCCCCTGCACGTCGCCGCGCGCTAC
GGCCACGCCGGCGTGGCGTCCGTCCTGCTGGAGCTTGGCGCCGTCGTCGA
CGCCCGGGACTCGACGGGCCTGACGCCGCTGCACTATGCCGCCGGGAACG
GCCACCTGAGGGCGATAGAGGTGCTACTCGGGGCAGGGGCGGCGGCAGAC
GCCACTGCTTCTCCCCCTCCGTCTGGCAGCTCCTCCGGCGGCACAACCCC
CAGCGGAGAAACGACGGCGATAGACATGGCGGACATGGCGGGCTTCGACG
ACGCGGCGGCTCTGCTGAGGAGCCAGGCCTCGGTGGCAGAGGCCAGGGGC
GCGGCAGCCGGTAGGAAGGCGCTCGGATCGTGGCTCGAGGCGGTCGGGTG
CGGGGAGTACCTTGGACGTTTCTTGAGGGCAGGTTACGACGATCTTTCGT
TCATGGCGTCACAAGGGATCACCGAGGAGGACTTGGACTGCGTCGGCGTG
CCGAGGGAGAAGCTTGGCCTGAGAAAGAAGCTGTCGGCCATGCATGGCGT
CGAAAGGTTTTTGGACGCAACCAGAGGAGGCAGGAGCAGCAGCAGCGGTG
GCGCTGATGGCGCGTTGACGGCCGAGACGGCCAGTCAGAGCGAGGGGGAG
GTAAGCAGCTCCGGCAGTCGTGATGATGACAATGATGACGATGAGGAAGC
TGGAAGTGACGAAAGTGAAGACGTCGAGGAATCAGCGCGCGGCAGCGGTA
GCAGCGGTAGTGACGGAGAGGAGCCTAGCAGCAGCAATGGCGGCAGCGAT
GGCGACAGCGATACGGACTCGGAGAGCGACGCTTGA
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