mRNA_P-fluviatile_contig1.126.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig1.126.1
Unique NamemRNA_P-fluviatile_contig1.126.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig1.126.1 vs. uniprot
Match: A0A6H5JSX4_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX4_9PHAE)

HSP 1 Score: 469 bits (1207), Expect = 1.090e-162
Identity = 238/340 (70.00%), Postives = 283/340 (83.24%), Query Frame = 3 
Query:  189 TTEGEGVLISPIEMKRVKGTGTASQRHRQRAGPKVVMVMGMPGAGKSNLANKLLNHPSWDAFEEGDGIYGATVEAQRAEWDDMVVIDTPAIPSHDPQTTIENFDSVVQMLRDESSLSTLIFLVQQEEVIPAEFRDYAILLKQLNQLPCSKLIVCRQQMALSKRHKRTEDDRRHAGAMFVEQVLEDSGLNMPLVLLNDGYGSESFKQTEEIRRFVQRSERAPVDL-ASLRTFAELRLFWQRLADPACRLVALEEEIQELELALWHRSLWMACQVVPLAYISVTSPGAACLWTGCYVKREQEAFSELRRELKDKREEVEYKTVDEEELCAAKGIFAYLNHMC 1205
            TTEGEG L + ++++  +  G  S   R++  PKVVMV+GMP AGKSNLANKLLNHP+WDAFEEGDG YG+T E QR EW D+VVIDTP  P HDP+TT +NFD++V+ LR E SLSTLIFLVQQEEV P EFRDYA+LL+QLN LPCSKLIVCRQ  ALS+RHKRTE++RRH+GA FVE VL+DSGLNMPLVLLNDGYGSES KQ +EIRRFV RSERA +DL ASLRTFAELR F  +LADPA RL  + EE++++E +LWHRSLWMACQVVPLAYISV+SPGA C+WTG YVKREQEA + LR+EL DK+EE+E   VDE+EL AA+G+ A+L++MC
Sbjct:    2 TTEGEGFLSARLDVEH-QSAGAGSNGRRRQEAPKVVMVIGMPRAGKSNLANKLLNHPTWDAFEEGDGTYGSTTETQRVEWADLVVIDTPGFPGHDPKTTSKNFDALVKALRREGSLSTLIFLVQQEEVSPTEFRDYAVLLRQLNHLPCSKLIVCRQ-AALSRRHKRTEEERRHSGAQFVEGVLDDSGLNMPLVLLNDGYGSESIKQVDEIRRFVGRSERARLDLVASLRTFAELRSFAAKLADPASRLRTVREEVEQMEASLWHRSLWMACQVVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKELNDKKEEIELDIVDEQELRAAQGVLAFLDYMC 339
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BLAST of mRNA_P-fluviatile_contig1.126.1 vs. uniprot
Match: D8LN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN49_ECTSI)

HSP 1 Score: 246 bits (628), Expect = 3.780e-77
Identity = 124/170 (72.94%), Postives = 145/170 (85.29%), Query Frame = 3 
Query:  699 RRHAGAMFVEQVLEDSGLNMPLVLLNDGYGSESFKQTEEIRRFVQRSERAPVD-LASLRTFAELRLFWQRLADPACRLVALEEEIQELELALWHRSLWMACQVVPLAYISVTSPGAACLWTGCYVKREQEAFSELRRELKDKREEVEYKTVDEEELCAAKGIFAYLNHMC 1205
            +RHAGA FVE VLEDSGLNMPLVLLNDGYGSESFKQ +EIRRFV RSERA +D LAS RTFAELR F  +LADPA RL  L EE++++E +LWHRSLWMAC VVPLAYISV+SPGA C+WTG YVKREQEA + LR+EL DK+EE+E   VDE+ELCAA+G+ A+L++MC
Sbjct:   26 KRHAGAQFVEGVLEDSGLNMPLVLLNDGYGSESFKQVDEIRRFVGRSERARLDPLASPRTFAELRSFAAKLADPASRLRTLREEVEQMEASLWHRSLWMACHVVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKELNDKKEEIELDIVDEQELCAAQGVSAFLDYMC 195
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig1.126.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSX4_9PHAE1.090e-16270.00G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
D8LN49_ECTSI3.780e-7772.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig1contigP-fluviatile_contig1:1667770..1671349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_003480.1
Exons5
Model size1217
Cds size990
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig1.126.1prot_P-fluviatile_contig1.126.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig1 1667770..1670093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.3111062-CDS-P-fluviatile_contig1:1667769..16678801622815290.3111062-CDS-P-fluviatile_contig1:1667769..1667880Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1667770..1667880 -
1693561408.3426816-CDS-P-fluviatile_contig1:1667769..16678801693561408.3426816-CDS-P-fluviatile_contig1:1667769..1667880Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1667770..1667880 -
1622815290.325468-CDS-P-fluviatile_contig1:1668246..16683481622815290.325468-CDS-P-fluviatile_contig1:1668246..1668348Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1668247..1668348 -
1693561408.3508308-CDS-P-fluviatile_contig1:1668246..16683481693561408.3508308-CDS-P-fluviatile_contig1:1668246..1668348Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1668247..1668348 -
1622815290.3373404-CDS-P-fluviatile_contig1:1668689..16689901622815290.3373404-CDS-P-fluviatile_contig1:1668689..1668990Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1668690..1668990 -
1693561408.36032-CDS-P-fluviatile_contig1:1668689..16689901693561408.36032-CDS-P-fluviatile_contig1:1668689..1668990Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1668690..1668990 -
1622815290.3495128-CDS-P-fluviatile_contig1:1669617..16700931622815290.3495128-CDS-P-fluviatile_contig1:1669617..1670093Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1669618..1670093 -
1693561408.3779333-CDS-P-fluviatile_contig1:1669617..16700931693561408.3779333-CDS-P-fluviatile_contig1:1669617..1670093Porterinema fluviatile SAG_2381CDSP-fluviatile_contig1 1669618..1670093 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815290.361341-UTR-P-fluviatile_contig1:1670093..16701221622815290.361341-UTR-P-fluviatile_contig1:1670093..1670122Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1670094..1670122 -
1693561408.393926-UTR-P-fluviatile_contig1:1670093..16701221693561408.393926-UTR-P-fluviatile_contig1:1670093..1670122Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1670094..1670122 -
1622815290.375361-UTR-P-fluviatile_contig1:1671151..16713491622815290.375361-UTR-P-fluviatile_contig1:1671151..1671349Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1671152..1671349 -
1693561408.4036736-UTR-P-fluviatile_contig1:1671151..16713491693561408.4036736-UTR-P-fluviatile_contig1:1671151..1671349Porterinema fluviatile SAG_2381UTRP-fluviatile_contig1 1671152..1671349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig1.126.1

>prot_P-fluviatile_contig1.126.1 ID=prot_P-fluviatile_contig1.126.1|Name=mRNA_P-fluviatile_contig1.126.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=330bp
MKRVKGTGTASQRHRQRAGPKVVMVMGMPGAGKSNLANKLLNHPSWDAFE
EGDGIYGATVEAQRAEWDDMVVIDTPAIPSHDPQTTIENFDSVVQMLRDE
SSLSTLIFLVQQEEVIPAEFRDYAILLKQLNQLPCSKLIVCRQQMALSKR
HKRTEDDRRHAGAMFVEQVLEDSGLNMPLVLLNDGYGSESFKQTEEIRRF
VQRSERAPVDLASLRTFAELRLFWQRLADPACRLVALEEEIQELELALWH
RSLWMACQVVPLAYISVTSPGAACLWTGCYVKREQEAFSELRRELKDKRE
EVEYKTVDEEELCAAKGIFAYLNHMCLEI*
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mRNA from alignment at P-fluviatile_contig1:1667770..1671349-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig1.126.1 ID=mRNA_P-fluviatile_contig1.126.1|Name=mRNA_P-fluviatile_contig1.126.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3580bp|location=Sequence derived from alignment at P-fluviatile_contig1:1667770..1671349- (Porterinema fluviatile SAG_2381)
GTGCGTTGTTTCCGTCATCCAACGTCATTCCCTCGCACCTGGCGGGTGAG
AATTGGGACGCAAACGACTTTTGACACGACCAGAACCATATCAGTGCAAT
CACTCGGGAGTGCAACACCTTCGGCCGCGACAAGGGCACACACCGCTCAT
CTTCTGCCACCTTTTTGGTCCTCTGCGGGACGACAACAACAACAGAAGGT
ACGGAATTAGTCTAGACACTTGCACTCATTGCCAAACACCTACACGGTCC
CTCTCCGTACCCCTCCTGCAGGCACAAGGCTCAATGGGCGGGATGTTGTA
ATATTGATTGAAGGGGGGAAAACTCCCTAGCTTCCGCGATGCGTTGGGCA
GCTGCAAACAAGGCCACTCAGAAAAGGTGTTGCAATGTCGCAAAGAAAGC
AGGGGTTACCGCTCAACGGCACCCTCAACTGCCCTCCCTGAGACTATTTC
CTTTCAATCGCGGGAAATCCTCTGCGTATGAGGAGAAAATAGCATAAAAG
AGCAACTCAAATTGTTGGAATTGTTACGCCATAGACTACACAGTCTTGCG
CTGGCCTGTCATGGCCTCTTTGTCTTCCTCGTGGGTAATGAGGGAGAGAG
CGAGAAAGGGGCGCGGGGCCCGAGCGGGGAGGACATTGTTCCGTCCTTTC
CGGAGTCGCATGTGTTGCTTCCTCCCATCACACCATACGCACAATCACCT
TAGTTGGTCGCAAACATAACATCAGTGATCATGTAGCACGTGCACTGTGG
CCTATAACTTTGCTGGGTCGGTATCTGCATTAGCACGTGTGAAGTATTCA
AGACGCACTCGTGTGTCAGCAAAAATGATCAAAACTGGTCGTATTGGAGA
GGAAAACAAGTACCTGGTACCACCTTTGGTTTATCTCTCCACAAAGAAAG
CAAACGAATGGCGGTGACATATTTGGTGGTACATTTGACCTTGGTCGTGT
AATCATGGGTACGTCACCCCAAGCAGATGCTCTTTGGTTTGAAGTTGTTG
ATATTGGAAGCGAGGGTGGGGTGGGTTCGGTGAGATCGTGCGGTTGGCTG
CTCGTTGTTTGAAAACTCCTGGGCGGCTTTCCCTGCCTGATCATGATTCA
ACCCTGAGACAGGCATTTGCTGTAACGGCAGGAATTCACGCGCCTGTGAG
ATTGGGGGGTGTAGCTTCAGCTTCCAACAGAGCTTGCTTGTATTTCCCGC
CCGCGCCTATGTGACCTTGACCAACAGGGGAAGGAGTGCTGATTTCACCG
ATTGAAATGAAGCGCGTCAAGGGCACTGGTACTGCATCTCAACGTCATCG
CCAACGAGCAGGCCCCAAGGTTGTCATGGTGATGGGGATGCCTGGGGCAG
GAAAGTCAAACCTGGCGAACAAGCTCCTCAATCATCCAAGTTGGGACGCT
TTTGAAGAAGGGGACGGAATATACGGCGCCACGGTTGAGGCGCAGAGAGC
CGAGTGGGACGATATGGTGGTGATCGACACGCCAGCGATTCCCAGCCATG
ATCCGCAGACCACAATAGAAAATTTCGACTCTGTCGTGCAAATGCTACGA
GATGAAAGTAGCCTCAGCACTCTTATCTTCTTGGTCCAGCAAGAGGAAGT
GATTCCAGCCGAGTTTCGAGACTACGCCATTTTGCTCAAGCAGCTGAATC
AACTACCCTGCTCGAAGCTAATTGTGTGCCGGCAGCAGATGGCTTTAAGC
AAGCGCCACAAAAGGACGGAGGATGACAGGAGGTGAGCCTGAGAGGTATC
CCCGTACACGTGTTGAGGCTCATTTCATTTGGCTCGGGAACTTTTTGAAG
TCAGACACAGCCAACGGCTAGGGCTATTGCCGTTGATACGGCGTTAAGCA
TTTCGCCGAAATTCCGCATATTGCGCTTCATCTTCGCACACATGCGCGCG
GCGAACAGGGATAGCTGTCGTCAGCACGCATTGAATTCACGACGTTACAG
TGCGATGAAACAGCTTCGTAGTAATTGGTTGCCCTGTTCGACAAGGCCAA
CCTATCTGCTGCATGAAACTCGTCACGCGAAATCCACTACTTTGCCCACA
TCTTTTCTCACTAAATTCATCATTTTTCGGCAGTTTTCGGCGGGAGAAAG
GAGGTCGCTACATATCGCTGGTCGGATGTTTACCCTCCAAACAGCGTTTT
GATATCAACTGCGCAATCTCGACTCGCACACCTTGCTCATCCTGTCGACT
CGTCCGGTGGATACTTCGGACATGTACTGGCAAGAAACCGCGAAACAGCG
CAGTCATTATTCCCTTGAATGGTTTTTTCTTGTTTAATCGTTTTCCCGGT
TTAATGCTGCCTCCTAATTCGAAATCTCTCCTGTGGAACAATCGGAACGA
ACCGCGAAGGCATGCGGGTGCGATGTTCGTGGAGCAGGTCCTGGAGGATA
GCGGTTTGAACATGCCGTTGGTGCTGCTCAACGACGGCTACGGGAGCGAG
TCCTTCAAGCAGACCGAGGAGATCCGTCGATTCGTTCAGCGGTCGGAACG
CGCCCCGGTGGACCTCGCCTCGCTCCGGACGTTTGCCGAGCTTCGATTGT
TCTGGCAGCGGCTGGCGGATCCCGCTTGTCGGCTGGTCGCTCTGGAAGAA
GAGATCCAAGAGCTGGAGCTTGCCTTGTGGCACCGCAGCCTATGGATGGC
GTGCCAAGTGGTGGGTGGGCACCGCGAAATGCACGACCGCGCACAGCAAT
ATTTGTGTGGTTCCCAAATGAGTCCCCCCGGCGTAGCCCACCCTTTATGC
CACTCGCCGAATGCATCACGGCGCTTCGTTCTTGGTGAATGCAAGATCTC
GGACCAGCGAAAACCCGGGAAATCGCTCTGTCCCGGCCTGGTAGGGAGCG
AGATCTATTATGGCCTTACGGCTACGACAGGCGTAAATTGAGACACCCCC
CCTGCCTGCGTGAATTGATCGTGATGCAAGAATGCTACCAAACAAGCTTA
TGGAATCCTCCTTTCGTGCCTCTGGACTTTCGGTCGCAACGATTTGGATA
GGTGCCATTGGCTTACATTTCGGTGACATCGCCGGGCGCGGCGTGTCTTT
GGACCGGATGCTACGTGAAGCGTGAACAGGAAGCCTTCAGCGAGCTTCGG
AGGGTACGCTTGCTTGGGTGCTGCACGACAGTATTTCTGCCTCACGTTTT
CAGCATTCGCTGCGACAAACTCTCAAAACTCGAGAGAACGATATCGAGTG
CCCGTAGTGCTTCTACTGGGTATCATTAGCGCCGATACTTGTGATTGGCC
AAAATCCCTTGATTCGTGTTTCGTGGGTGCAAAGTGCACCACCCGGCGGC
TTTTCCATCTTTCCGAAGGGAAAAATCGCTACATTATCCCACACGCGCCT
TGTGGCTGTTGCTCGTCCTACATCCTTTATCGCCGCCTGAAAATTGCATG
ATGAAATCTGCCATGCTCTCGCTCCGTTCCATGCCCCTTGGTCGGGAACC
ACTCTTTGTGGATCGGCAGGAGTTGAAAGACAAGAGAGAGGAAGTCGAAT
ACAAAACTGTGGACGAGGAAGAGCTTTGCGCCGCGAAGGGAATATTCGCC
TACCTCAACCACATGTGCTTGGAGATTTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig1:1667770..1671349-

>mRNA_P-fluviatile_contig1.126.1 ID=mRNA_P-fluviatile_contig1.126.1|Name=mRNA_P-fluviatile_contig1.126.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1980bp|location=Sequence derived from alignment at P-fluviatile_contig1:1667770..1671349- (Porterinema fluviatile SAG_2381)
ATGAAGCGCGTCAAGGGCACTGGTACTGCATCTCAACGTCATCGCCAACG
AGCAGGCCCCAAGGTTGTCATGGTGATGGGGATGCCTGGGGCAGGAAAGT
CAAACCTGGCGAACAAGCTCCTCAATCATCCAAGTTGGGACGCTTTTGAA
GAAGGGGACGGAATATACGGCGCCACGGTTGAGGCGCAGAGAGCCGAGTG
GGACGATATGGTGGTGATCGACACGCCAGCGATTCCCAGCCATGATCCGC
AGACCACAATAGAAAATTTCGACTCTGTCGTGCAAATGCTACGAGATGAA
AGTAGCCTCAGCACTCTTATCTTCTTGGTCCAGCAAGAGGAAGTGATTCC
AGCCGAGTTTCGAGACTACGCCATTTTGCTCAAGCAGCTGAATCAACTAC
CCTGCTCGAAGCTAATTGTGTGCCGGCAGCAGATGGCTTTAAGCAAGCGC
CACAAAAGGACGGAGGATGACAGGAGATGAAGCGCGTCAAGGGCACTGGT
ACTGCATCTCAACGTCATCGCCAACGAGCAGGCCCCAAGGTTGTCATGGT
GATGGGGATGCCTGGGGCAGGAAAGTCAAACCTGGCGAACAAGCTCCTCA
ATCATCCAAGTTGGGACGCTTTTGAAGAAGGGGACGGAATATACGGCGCC
ACGGTTGAGGCGCAGAGAGCCGAGTGGGACGATATGGTGGTGATCGACAC
GCCAGCGATTCCCAGCCATGATCCGCAGACCACAATAGAAAATTTCGACT
CTGTCGTGCAAATGCTACGAGATGAAAGTAGCCTCAGCACTCTTATCTTC
TTGGTCCAGCAAGAGGAAGTGATTCCAGCCGAGTTTCGAGACTACGCCAT
TTTGCTCAAGCAGCTGAATCAACTACCCTGCTCGAAGCTAATTGTGTGCC
GGCAGCAGATGGCTTTAAGCAAGCGCCACAAAAGGACGGAGGATGACAGG
AGGCATGCGGGTGCGATGTTCGTGGAGCAGGTCCTGGAGGATAGCGGTTT
GAACATGCCGTTGGTGCTGCTCAACGACGGCTACGGGAGCGAGTCCTTCA
AGCAGACCGAGGAGATCCGTCGATTCGTTCAGCGGTCGGAACGCGCCCCG
GTGGACCTCGCCTCGCTCCGGACGTTTGCCGAGCTTCGATTGTTCTGGCA
GCGGCTGGCGGATCCCGCTTGTCGGCTGGTCGCTCTGGAAGAAGAGATCC
AAGAGCTGGAGCTTGCCTTGTGGCACCGCAGCCTATGGATGGCGTGCCAA
GTGGCATGCGGGTGCGATGTTCGTGGAGCAGGTCCTGGAGGATAGCGGTT
TGAACATGCCGTTGGTGCTGCTCAACGACGGCTACGGGAGCGAGTCCTTC
AAGCAGACCGAGGAGATCCGTCGATTCGTTCAGCGGTCGGAACGCGCCCC
GGTGGACCTCGCCTCGCTCCGGACGTTTGCCGAGCTTCGATTGTTCTGGC
AGCGGCTGGCGGATCCCGCTTGTCGGCTGGTCGCTCTGGAAGAAGAGATC
CAAGAGCTGGAGCTTGCCTTGTGGCACCGCAGCCTATGGATGGCGTGCCA
AGTGGTGCCATTGGCTTACATTTCGGTGACATCGCCGGGCGCGGCGTGTC
TTTGGACCGGATGCTACGTGAAGCGTGAACAGGAAGCCTTCAGCGAGCTT
CGGAGGGTGCCATTGGCTTACATTTCGGTGACATCGCCGGGCGCGGCGTG
TCTTTGGACCGGATGCTACGTGAAGCGTGAACAGGAAGCCTTCAGCGAGC
TTCGGAGGGAGTTGAAAGACAAGAGAGAGGAAGTCGAATACAAAACTGTG
GACGAGGAAGAGCTTTGCGCCGCGAAGGGAATATTCGCCTACCTCAACCA
CATGTGCTTGGAGATTTAGGAGTTGAAAGACAAGAGAGAGGAAGTCGAAT
ACAAAACTGTGGACGAGGAAGAGCTTTGCGCCGCGAAGGGAATATTCGCC
TACCTCAACCACATGTGCTTGGAGATTTAG
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