mRNA_P-fluviatile_contig14.2021.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2021.1
Unique NamemRNA_P-fluviatile_contig14.2021.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:251335..252771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size549
Cds size327
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2021.1prot_P-fluviatile_contig14.2021.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 251447..252045 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.138781-UTR-P-fluviatile_contig14:251334..2514461622815595.138781-UTR-P-fluviatile_contig14:251334..251446Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 251335..251446 +
1693562374.233207-UTR-P-fluviatile_contig14:251334..2514461693562374.233207-UTR-P-fluviatile_contig14:251334..251446Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 251335..251446 +
1622815595.179848-UTR-P-fluviatile_contig14:252045..2520741622815595.179848-UTR-P-fluviatile_contig14:252045..252074Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 252046..252074 +
1693562374.26823-UTR-P-fluviatile_contig14:252045..2520741693562374.26823-UTR-P-fluviatile_contig14:252045..252074Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 252046..252074 +
1622815595.1930537-UTR-P-fluviatile_contig14:252690..2527711622815595.1930537-UTR-P-fluviatile_contig14:252690..252771Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 252691..252771 +
1693562374.2802746-UTR-P-fluviatile_contig14:252690..2527711693562374.2802746-UTR-P-fluviatile_contig14:252690..252771Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 252691..252771 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.1522415-CDS-P-fluviatile_contig14:251446..2517191622815595.1522415-CDS-P-fluviatile_contig14:251446..251719Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 251447..251719 +
1693562374.2431004-CDS-P-fluviatile_contig14:251446..2517191693562374.2431004-CDS-P-fluviatile_contig14:251446..251719Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 251447..251719 +
1622815595.163275-CDS-P-fluviatile_contig14:251991..2520451622815595.163275-CDS-P-fluviatile_contig14:251991..252045Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 251992..252045 +
1693562374.2528665-CDS-P-fluviatile_contig14:251991..2520451693562374.2528665-CDS-P-fluviatile_contig14:251991..252045Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 251992..252045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2021.1

>prot_P-fluviatile_contig14.2021.1 ID=prot_P-fluviatile_contig14.2021.1|Name=mRNA_P-fluviatile_contig14.2021.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=109bp
MGSSELDPRRKRRRTARGHAGFSKLVGDRKKRCSLSLPWVAVIFGLGMAT
IVSVRTGLKDSARSRATVGGKPDKADHPLAVLLEQHDIDPQMCTSRIGGY
RRGSSAMF*
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mRNA from alignment at P-fluviatile_contig14:251335..252771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2021.1 ID=mRNA_P-fluviatile_contig14.2021.1|Name=mRNA_P-fluviatile_contig14.2021.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1437bp|location=Sequence derived from alignment at P-fluviatile_contig14:251335..252771+ (Porterinema fluviatile SAG_2381)
CCCAGCTCCAAGCTCCAACCTTGCACACGCCACACAAACACCACGTCCCG
CTCGGTGCCCCCGACAACCCTCTCCGAGTATGTTCGGCACTGGACGTTGA
CCATTGAGCAACATGGGCTCCTCTGAGCTAGACCCGAGGAGGAAAAGGAG
ACGTACGGCTAGAGGTCACGCTGGCTTTTCAAAACTCGTCGGAGACCGCA
AGAAGCGCTGTTCCTTGTCCTTGCCGTGGGTCGCCGTTATTTTTGGCCTT
GGAATGGCCACGATCGTTAGCGTGAGGACTGGTCTCAAGGACTCCGCGAG
AAGTCGAGCGACGGTGGGAGGAAAACCGGACAAGGCGGACCATCCTCTAG
CGGTGCTTTTGGAGCAGCATGACATTGACCCACAGGTGCCTTACCCCGCC
GGATGAGAGCGAGTGGTGCACCCTCCCGCTGTTGCGCACATAAGATGCTA
TCATATAATGTAACTTGATGCCTTCGGCTTCCATAACACAATACAGAACA
TCTTTGGACCGAATATTTTTTGCGCAAGGTGTGGGTTTAGATGGGATGAT
ACGTCCAACTTTTCAAATTTTCCAGAAATCTCACGTGTTGTCGGGAACAC
GGATTTGTGTCCCATCTCATTTACACGATTCTTCCCCGCATGTGTGCTGC
TGTGCAGATGTGTACATCACGTATTGGAGGCTATCGCCGCGGATCTTCTG
CAATGTTCTAAAGATTCCGCCACCACTTTGAAATTACCAGGCGAGCTACA
CCAACCGAAAAGTCGCAGCGCACGAGCATGTGCCGATAGAAGATACAGCC
AGTCATGCTCGGTGCCACAGGAAGTCGAATACCACGACGCTATCGCCACA
AGAGAACTTTGCCATGTCAAGCAATTTTCTGGTGATTTCAGTTTCTATTG
GCTTCATCAAAACCGCATTCGCTTTGAAGGAGGATCCGGTCACAGAAAGA
CCAAGGGCTTGCGCACGAGCGCGCGTGACATGGTTTCCGGCAAACAACCA
GTTCGCGCACTAGGAAAAGCCACATTCGAAAAGCCGCGTAAAGGAACCAT
TCGGAAATCAAGCTCCTGTCGCTGAATTGACAAGAATTGTTGGTTTGTTG
GGCTGCTCCAGAAAGTGGAAATCCAGTGTTCACCAAGCCCGACAGATGGA
TTTACAGAGGGCCGAGACAACATGAAATCTTCCGCGCTCAAGAGGTCAGA
ACGTTCCATCAGTGTTGATTCATCGTTTGCCCAAGCACGACGAACAACTT
GTCGTCCAGCGCCTCCAGCTGGGCACACTGTTTGACGCGGCATATTTTCG
TCCTGAACAATTCGAGCATCATCCACCTGTACGGCGTGACTTTCATATGT
CTTCAGGCTGCTCGATTCGCGGACCCTGTGGGTCGATGCTACGCGATCGA
CGAACCACCAGCGGCAAGGCTCGGCCTGTTTACCTGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:251335..252771+

>mRNA_P-fluviatile_contig14.2021.1 ID=mRNA_P-fluviatile_contig14.2021.1|Name=mRNA_P-fluviatile_contig14.2021.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=654bp|location=Sequence derived from alignment at P-fluviatile_contig14:251335..252771+ (Porterinema fluviatile SAG_2381)
ATGGGCTCCTCTGAGCTAGACCCGAGGAGGAAAAGGAGACGTACGGCTAG
AGGTCACGCTGGCTTTTCAAAACTCGTCGGAGACCGCAAGAAGCGCTGTT
CCTTGTCCTTGCCGTGGGTCGCCGTTATTTTTGGCCTTGGAATGGCCACG
ATCGTTAGCGTGAGGACTGGTCTCAAGGACTCCGCGAGAAGTCGAGCGAC
GGTGGGAGGAAAACCGGACAAGGCGGACCATCCTCTAGCGGTGCTTTTGG
AGCAGCATGACATTGACCCACAGATGGGCTCCTCTGAGCTAGACCCGAGG
AGGAAAAGGAGACGTACGGCTAGAGGTCACGCTGGCTTTTCAAAACTCGT
CGGAGACCGCAAGAAGCGCTGTTCCTTGTCCTTGCCGTGGGTCGCCGTTA
TTTTTGGCCTTGGAATGGCCACGATCGTTAGCGTGAGGACTGGTCTCAAG
GACTCCGCGAGAAGTCGAGCGACGGTGGGAGGAAAACCGGACAAGGCGGA
CCATCCTCTAGCGGTGCTTTTGGAGCAGCATGACATTGACCCACAGATGT
GTACATCACGTATTGGAGGCTATCGCCGCGGATCTTCTGCAATGTTCTAA
ATGTGTACATCACGTATTGGAGGCTATCGCCGCGGATCTTCTGCAATGTT
CTAA
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