mRNA_P-fluviatile_contig14.2103.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2103.1
Unique NamemRNA_P-fluviatile_contig14.2103.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:976309..976638 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size332
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.7403173-CDS-P-fluviatile_contig14:976308..9766381622815590.7403173-CDS-P-fluviatile_contig14:976308..976638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 976309..976638 +
1693562367.9374485-CDS-P-fluviatile_contig14:976308..9766381693562367.9374485-CDS-P-fluviatile_contig14:976308..976638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 976309..976638 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2103.1prot_P-fluviatile_contig14.2103.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 976309..976638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2103.1

>prot_P-fluviatile_contig14.2103.1 ID=prot_P-fluviatile_contig14.2103.1|Name=mRNA_P-fluviatile_contig14.2103.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=110bp
EQYARSLSDSDDSIADIPQRIPAINTGSRFDVLSEDDDEEWPKPSEQEWQ
TVKKKGSKVSDPDMPSPSPVDTLRPTPPRVRSLPWGTDAAPRVGKALVCK
ARMTQIAQP*
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mRNA from alignment at P-fluviatile_contig14:976309..976638+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2103.1 ID=mRNA_P-fluviatile_contig14.2103.1|Name=mRNA_P-fluviatile_contig14.2103.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig14:976309..976638+ (Porterinema fluviatile SAG_2381)
GAGCAGTATGCAAGATCACTTTCCGACTCGGATGATTCCATCGCTGATAT
TCCTCAACGTATCCCTGCAATAAACACCGGTAGTCGCTTTGATGTCCTCA
GTGAGGATGACGACGAAGAGTGGCCGAAACCGTCGGAGCAGGAATGGCAG
ACAGTAAAGAAAAAGGGTTCAAAAGTATCTGATCCTGACATGCCATCTCC
TTCTCCTGTCGACACTTTACGTCCTACACCCCCTCGCGTTCGATCGCTGC
CTTGGGGGACAGATGCCGCCCCACGAGTTGGAAAAGCTCTCGTATGTAAA
GCGCGAATGACTCAAATTGCTCAACCCTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:976309..976638+

>mRNA_P-fluviatile_contig14.2103.1 ID=mRNA_P-fluviatile_contig14.2103.1|Name=mRNA_P-fluviatile_contig14.2103.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=660bp|location=Sequence derived from alignment at P-fluviatile_contig14:976309..976638+ (Porterinema fluviatile SAG_2381)
GAGCAGTATGCAAGATCACTTTCCGACTCGGATGATTCCATCGCTGATAT
TCCTCAACGTATCCCTGCAATAAACACCGGTAGTCGCTTTGATGTCCTCA
GTGAGGATGACGACGAAGAGTGGCCGAAACCGTCGGAGCAGGAATGGCAG
ACAGTAAAGAAAAAGGGTTCAAAAGTATCTGATCCTGACATGCCATCTCC
TTCTCCTGTCGACACTTTACGTCCTACACCCCCTCGCGTTCGATCGCTGC
CTTGGGGGACAGATGCCGCCCCACGAGTTGGAAAAGCTCTCGTATGTAAA
GCGCGAATGACTCAAATTGCTCAACCCTGAGAGCAGTATGCAAGATCACT
TTCCGACTCGGATGATTCCATCGCTGATATTCCTCAACGTATCCCTGCAA
TAAACACCGGTAGTCGCTTTGATGTCCTCAGTGAGGATGACGACGAAGAG
TGGCCGAAACCGTCGGAGCAGGAATGGCAGACAGTAAAGAAAAAGGGTTC
AAAAGTATCTGATCCTGACATGCCATCTCCTTCTCCTGTCGACACTTTAC
GTCCTACACCCCCTCGCGTTCGATCGCTGCCTTGGGGGACAGATGCCGCC
CCACGAGTTGGAAAAGCTCTCGTATGTAAAGCGCGAATGACTCAAATTGC
TCAACCCTGA
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