mRNA_P-fluviatile_contig14.2086.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2086.1
Unique NamemRNA_P-fluviatile_contig14.2086.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:842131..843393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1263
Cds size798
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.6567879-UTR-P-fluviatile_contig14:842130..8425951622815590.6567879-UTR-P-fluviatile_contig14:842130..842595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 842131..842595 +
1693562367.898541-UTR-P-fluviatile_contig14:842130..8425951693562367.898541-UTR-P-fluviatile_contig14:842130..842595Porterinema fluviatile SAG_2381UTRP-fluviatile_contig14 842131..842595 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815590.671083-CDS-P-fluviatile_contig14:842595..8433931622815590.671083-CDS-P-fluviatile_contig14:842595..843393Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 842596..843393 +
1693562367.9114509-CDS-P-fluviatile_contig14:842595..8433931693562367.9114509-CDS-P-fluviatile_contig14:842595..843393Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 842596..843393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2086.1prot_P-fluviatile_contig14.2086.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 842596..843393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2086.1

>prot_P-fluviatile_contig14.2086.1 ID=prot_P-fluviatile_contig14.2086.1|Name=mRNA_P-fluviatile_contig14.2086.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=266bp
MQTAETEHALPVDQVFLYKLGLITIAKKKGHLAGSQQTQDTTVLTRPSPK
ERKTPGGSAPPNKNCQAAATTADFRQKLVGCDMVTLTGTSFKVAQQRALN
AGEQNIGVQVLRLSVLNYSFRPQPQTLSNEKVKCRTTWGYSQHLQPPKDC
VSNSATLENSLQIFNYVLSPEPRVMPRSPVDWRSRAHPPQASSDPGGGQR
KARTTATTNLVCQRPRQHLATRGNHICADRCIIRSSPFGFLLFACAVPSH
ERISGGGAPIPHAPR*
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mRNA from alignment at P-fluviatile_contig14:842131..843393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2086.1 ID=mRNA_P-fluviatile_contig14.2086.1|Name=mRNA_P-fluviatile_contig14.2086.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1263bp|location=Sequence derived from alignment at P-fluviatile_contig14:842131..843393+ (Porterinema fluviatile SAG_2381)
AGTAAAATTCTCTTTATATAACGCTGGAATCTGGGTTGAAATCTTCTCGG
TTTCTGTTAACTGCTAATCCATTTATTTTTCAGTTTCATGCTGGATGTCT
CCGTCCATTCCTCGCTCTCGTCGGGTCCGCCCGTCGTGTGGATCATATCC
ATCCAATCCATCGATTTTTGCAATGTCTGCCGCATGCTTATCGGAGATTA
TGGCGGTTGGAACTTGACGCCGGCCTGAGTGAGGCGATCGATCTCCGTGT
GGCAACCTCTCTGCCCGCTGGACGCCCTTTTTAGCCCAAACCACTCATTC
GAGGCGCGATAATCCTAACTCGCAACTTTCATGAGTGCACCCCGTCACGC
CCGTGCTTCCCTTCTCTTGCCTCCCCTCCCCTAGCCTTCACATGGTGTAC
AGAGCCCCACACACCCGCCCCACGATAGCGAAAAACACTACTTCGGATTA
GGTGACCCTCCATGCATGCAGACAGCGGAGACTGAACACGCCCTCCCTGT
TGACCAAGTCTTTCTGTACAAGCTTGGTCTGATCACCATCGCCAAGAAGA
AAGGCCATCTCGCTGGTAGTCAACAAACTCAAGATACTACCGTGCTCACA
CGCCCCAGCCCAAAGGAACGCAAAACGCCCGGTGGATCTGCCCCCCCGAA
CAAAAATTGCCAAGCCGCCGCCACAACAGCCGACTTCCGACAAAAGCTCG
TGGGTTGTGACATGGTGACGCTCACTGGAACCAGTTTCAAGGTTGCGCAA
CAACGCGCTTTGAATGCCGGGGAACAAAATATTGGCGTTCAAGTCCTACG
CCTTTCGGTTCTCAACTATTCTTTCCGTCCCCAACCTCAAACCTTGTCCA
ACGAAAAAGTCAAGTGCCGAACAACCTGGGGTTATTCACAACACCTTCAG
CCCCCCAAAGATTGTGTCAGCAACTCAGCAACATTAGAGAACTCGTTGCA
GATCTTCAACTACGTCCTTTCCCCAGAACCACGCGTCATGCCGAGATCAC
CAGTCGATTGGCGTTCGAGGGCGCACCCGCCGCAAGCCAGCTCGGATCCC
GGCGGCGGTCAACGGAAGGCGAGGACGACAGCCACCACCAATCTTGTATG
TCAGCGACCGCGCCAGCACCTCGCAACACGAGGAAATCATATTTGCGCCG
ACAGGTGCATCATTCGCTCATCTCCCTTCGGCTTCCTTCTATTCGCGTGT
GCTGTTCCATCACATGAACGCATATCTGGCGGCGGGGCTCCGATTCCACA
CGCGCCACGCTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:842131..843393+

>mRNA_P-fluviatile_contig14.2086.1 ID=mRNA_P-fluviatile_contig14.2086.1|Name=mRNA_P-fluviatile_contig14.2086.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1596bp|location=Sequence derived from alignment at P-fluviatile_contig14:842131..843393+ (Porterinema fluviatile SAG_2381)
ATGCAGACAGCGGAGACTGAACACGCCCTCCCTGTTGACCAAGTCTTTCT
GTACAAGCTTGGTCTGATCACCATCGCCAAGAAGAAAGGCCATCTCGCTG
GTAGTCAACAAACTCAAGATACTACCGTGCTCACACGCCCCAGCCCAAAG
GAACGCAAAACGCCCGGTGGATCTGCCCCCCCGAACAAAAATTGCCAAGC
CGCCGCCACAACAGCCGACTTCCGACAAAAGCTCGTGGGTTGTGACATGG
TGACGCTCACTGGAACCAGTTTCAAGGTTGCGCAACAACGCGCTTTGAAT
GCCGGGGAACAAAATATTGGCGTTCAAGTCCTACGCCTTTCGGTTCTCAA
CTATTCTTTCCGTCCCCAACCTCAAACCTTGTCCAACGAAAAAGTCAAGT
GCCGAACAACCTGGGGTTATTCACAACACCTTCAGCCCCCCAAAGATTGT
GTCAGCAACTCAGCAACATTAGAGAACTCGTTGCAGATCTTCAACTACGT
CCTTTCCCCAGAACCACGCGTCATGCCGAGATCACCAGTCGATTGGCGTT
CGAGGGCGCACCCGCCGCAAGCCAGCTCGGATCCCGGCGGCGGTCAACGG
AAGGCGAGGACGACAGCCACCACCAATCTTGTATGTCAGCGACCGCGCCA
GCACCTCGCAACACGAGGAAATCATATTTGCGCCGACAGGTGCATCATTC
GCTCATCTCCCTTCGGCTTCCTTCTATTCGCGTGTGCTGTTCCATCACAT
GAACGCATATCTGGCGGCGGGGCTCCGATTCCACACGCGCCACGCTGAAT
GCAGACAGCGGAGACTGAACACGCCCTCCCTGTTGACCAAGTCTTTCTGT
ACAAGCTTGGTCTGATCACCATCGCCAAGAAGAAAGGCCATCTCGCTGGT
AGTCAACAAACTCAAGATACTACCGTGCTCACACGCCCCAGCCCAAAGGA
ACGCAAAACGCCCGGTGGATCTGCCCCCCCGAACAAAAATTGCCAAGCCG
CCGCCACAACAGCCGACTTCCGACAAAAGCTCGTGGGTTGTGACATGGTG
ACGCTCACTGGAACCAGTTTCAAGGTTGCGCAACAACGCGCTTTGAATGC
CGGGGAACAAAATATTGGCGTTCAAGTCCTACGCCTTTCGGTTCTCAACT
ATTCTTTCCGTCCCCAACCTCAAACCTTGTCCAACGAAAAAGTCAAGTGC
CGAACAACCTGGGGTTATTCACAACACCTTCAGCCCCCCAAAGATTGTGT
CAGCAACTCAGCAACATTAGAGAACTCGTTGCAGATCTTCAACTACGTCC
TTTCCCCAGAACCACGCGTCATGCCGAGATCACCAGTCGATTGGCGTTCG
AGGGCGCACCCGCCGCAAGCCAGCTCGGATCCCGGCGGCGGTCAACGGAA
GGCGAGGACGACAGCCACCACCAATCTTGTATGTCAGCGACCGCGCCAGC
ACCTCGCAACACGAGGAAATCATATTTGCGCCGACAGGTGCATCATTCGC
TCATCTCCCTTCGGCTTCCTTCTATTCGCGTGTGCTGTTCCATCACATGA
ACGCATATCTGGCGGCGGGGCTCCGATTCCACACGCGCCACGCTGA
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