mRNA_P-fluviatile_contig14.2005.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig14.2005.1
Unique NamemRNA_P-fluviatile_contig14.2005.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig14.2005.1 vs. uniprot
Match: A0A6H5KC53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC53_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 3.160e-8
Identity = 28/55 (50.91%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 RKDSGTTSRAEHNARNGFGVGCNPPNNGDHAEYLTPFSRSVGGDVTLDRGRHTTR 165
            R+  G   R +H   +  G GC P N+G+ AEYL+PF+ ++GGDVTLD  RHTTR
Sbjct:   41 REFQGMDGRVKHITSHDPGTGCYPSNSGEPAEYLSPFTSAIGGDVTLD-ARHTTR 94
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BLAST of mRNA_P-fluviatile_contig14.2005.1 vs. uniprot
Match: A0A6H5JVL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVL5_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 3.050e-7
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   49 GFGVGCNPPNNGDHAEYLTPFSRSVGGDVTLDRGRHTTR 165
            G   G    N+G+ A+YL+PF+RSVGGD+T+DR RHTTR
Sbjct:  103 GLATGSVSSNHGEAADYLSPFTRSVGGDLTMDRHRHTTR 141
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BLAST of mRNA_P-fluviatile_contig14.2005.1 vs. uniprot
Match: A0A6H5K871_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K871_9PHAE)

HSP 1 Score: 53.5 bits (127), Expect = 5.120e-7
Identity = 27/55 (49.09%), Postives = 34/55 (61.82%), Query Frame = 1 
Query:    1 RKDSGTTSRAEHNARNGFGVGCNPPNNGDHAEYLTPFSRSVGGDVTLDRGRHTTR 165
            R+  G   R +H  R   G G    NNG+ AEYL+PF+ ++GGDVTL   RHTTR
Sbjct:   54 REFQGMDGRVKHITRKDPGTGRYSSNNGEPAEYLSPFTSAIGGDVTLLDARHTTR 108
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BLAST of mRNA_P-fluviatile_contig14.2005.1 vs. uniprot
Match: A0A6H5KQS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS8_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 2.240e-6
Identity = 19/28 (67.86%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:   82 GDHAEYLTPFSRSVGGDVTLDRGRHTTR 165
            G+ A+YL+P++RSVGGD+T+DR RHTTR
Sbjct:    5 GEAADYLSPYNRSVGGDLTMDRHRHTTR 32
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig14.2005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KC53_9PHAE3.160e-850.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVL5_9PHAE3.050e-758.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K871_9PHAE5.120e-749.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQS8_9PHAE2.240e-667.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig14contigP-fluviatile_contig14:148151..149039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.5279245-CDS-P-fluviatile_contig14:148150..1482331622815588.5279245-CDS-P-fluviatile_contig14:148150..148233Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 148151..148233 -
1693562363.3691065-CDS-P-fluviatile_contig14:148150..1482331693562363.3691065-CDS-P-fluviatile_contig14:148150..148233Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 148151..148233 -
1622815588.5427926-CDS-P-fluviatile_contig14:148957..1490391622815588.5427926-CDS-P-fluviatile_contig14:148957..149039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 148958..149039 -
1693562363.3872225-CDS-P-fluviatile_contig14:148957..1490391693562363.3872225-CDS-P-fluviatile_contig14:148957..149039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig14 148958..149039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig14.2005.1prot_P-fluviatile_contig14.2005.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig14 148151..149039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig14.2005.1

>prot_P-fluviatile_contig14.2005.1 ID=prot_P-fluviatile_contig14.2005.1|Name=mRNA_P-fluviatile_contig14.2005.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=55bp
RKDSGTTSRAEHNARNGFGVGCNPPNNGDHAEYLTPFSRSVGGDVTLDRG
RHTTR
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mRNA from alignment at P-fluviatile_contig14:148151..149039-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig14.2005.1 ID=mRNA_P-fluviatile_contig14.2005.1|Name=mRNA_P-fluviatile_contig14.2005.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=889bp|location=Sequence derived from alignment at P-fluviatile_contig14:148151..149039- (Porterinema fluviatile SAG_2381)
AGGAAGGACTCTGGGACGACCAGCCGGGCGGAGCACAACGCAAGGAATGG
TTTCGGGGTGGGGTGCAATCCACCTAACAACGGTAAGGGGATAATTCAGG
GTCTGTAAAATATTCCAAGCAAGATGGGCGTAGCTACCCTGTCGAGCATG
CGATTCTGGGGCGAGAAAAATCACCTTGTACGGGTTCGGGAGGAACGGAA
GGACCTGACCGTTCGGGCAGTAGTGTAGCGAGGACTAGTACCCCAAGCAA
ATCTATTGGTCGTAGTGGCGTGCAAGCGTCACGTGCAGAACCACGCAAAG
AGGAGATTGGCTGTTTATGCAACCCTCCGAGTGTGGCAGGGGAAGTGGGC
GTTCCCCTTCGTATGATCAAGCGAAGCGCGATGTTACCTCAATTATTGGT
GGGGCCCGGGGTGATGTCAAACCATCGGGGAGTGTACGGAATTTACGACA
GAGTAGTCCGAGATACAAGGCAAACTCCCCGCCTAACGCTTCCTTTCAGT
GTGACCCTCTGCCGGAAGACGAAGCGTTGTGGGAAAATGGTGCCAATGGG
GAGAGTAAAGAAGAGGGGTATTTTCTGATTGAAGAAAAATCCGGGGAAGA
GGAGGGGCGAATATTGATGCATCCAACTTTGGCTTTTCTCCTGCCAGTCC
TGCTTTGAGAGCACAAGTTCCACAGGATAGTGGTATTTTGGTGAAGTCGG
CGGTGAAACGATGGACAGAATCCATGTTCTAAATGATAACACTGAAAATC
CACCCGGTCGGGTACCTGTCCGGTGCTTCCTCCGCCTGTGCTAAATTTTG
GTGAAGGTGATCACGCGGAGTACCTGACGCCCTTCTCTAGGTCTGTGGGT
GGCGACGTTACTCTGGATCGAGGACGACACACCACGCGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig14:148151..149039-

>mRNA_P-fluviatile_contig14.2005.1 ID=mRNA_P-fluviatile_contig14.2005.1|Name=mRNA_P-fluviatile_contig14.2005.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig14:148151..149039- (Porterinema fluviatile SAG_2381)
AGGAAGGACTCTGGGACGACCAGCCGGGCGGAGCACAACGCAAGGAATGG
TTTCGGGGTGGGGTGCAATCCACCTAACAACGAGGAAGGACTCTGGGACG
ACCAGCCGGGCGGAGCACAACGCAAGGAATGGTTTCGGGGTGGGGTGCAA
TCCACCTAACAACGGTGATCACGCGGAGTACCTGACGCCCTTCTCTAGGT
CTGTGGGTGGCGACGTTACTCTGGATCGAGGACGACACACCACGCGAGTG
ATCACGCGGAGTACCTGACGCCCTTCTCTAGGTCTGTGGGTGGCGACGTT
ACTCTGGATCGAGGACGACACACCACGCGA
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