mRNA_P-fluviatile_contig13.1927.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1927.1
Unique NamemRNA_P-fluviatile_contig13.1927.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1927.1 vs. uniprot
Match: D7G199_ECTSI (N-acetyltransferase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G199_ECTSI)

HSP 1 Score: 308 bits (789), Expect = 4.350e-97
Identity = 212/388 (54.64%), Postives = 237/388 (61.08%), Query Frame = 2 
Query:   56 MRGSIVAVLGLYGVARGRAFAPPSTLV--LGYRK--QPLRALLFSPERDD-GGPIVTTAS------------STKPAAGWGSWEKVVSQRVEQEEVLKKLEPPAG------LHVRTITKGDIPTVSRLCIDTFRGPFQWFELPLQLIQEFVFFGQIQGRLGRVTRNEIKHSMVIAEDTRQAGPXXXXXXXXXXXXXXXXXKVVGFLEIGMLPKPTSSEESAIAGEALTAARXXXXXXXXXXXXNAKNVHKAGGEKVGGLPSPPDTRLDPVAGEAAXXAAGRELPGGGGDGSTTAISMRRQPDVAYLANVVVDRRQRRRGIGRTMVNSAIQIVRELWPAEERIYVSVEQGNDVALALYQGMGFELAAIEDEMMARSRRRPPRIYLSKPL 1150
            M   ++AVL  YG+  G AFAPP  +   +G R     +   LFSP+  D  GPIV   S            S KP+ GWGSWEKVVSQRVEQ+EVL +     G      L VRT   GD+P++SRLCID FRGPFQWFELP+QL QEF FFGQI+GRLGRVTRNEIKHSMVIA+DT                      +VVGFLEIGMLPKP+SSEESA+AGE+LTAARXXXXXXXXXXXX                                XX              TTAI   +QPDVAYLANVVVDR QRRRGIGRTMVNSAI+I                 GND+ALALYQGMGFELAA+EDEMMARSRRRPPR+YLSKPL
Sbjct:    1 MHYPLIAVLCWYGLPVGLAFAPPPLVRARVGSRNTASAVACHLFSPDHGDHDGPIVRAPSKAAKAAAQGKEVSGKPSGGWGSWEKVVSQRVEQDEVLDRFTSAGGVPEAAKLAVRTANSGDMPSISRLCIDIFRGPFQWFELPIQLFQEFAFFGQIKGRLGRVTRNEIKHSMVIAQDTTSR-------------------RVVGFLEIGMLPKPSSSEESALAGESLTAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XXXTTAIKREKQPDVAYLANVVVDRGQRRRGIGRTMVNSAIEI-----------------GNDIALALYQGMGFELAALEDEMMARSRRRPPRVYLSKPL 349
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1927.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G199_ECTSI4.350e-9754.64N-acetyltransferase domain-containing protein n=2 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:2894390..2898109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue1.2e-06
Seed eggNOG ortholog554065.XP_005847348.1
KEGG koko:K20793
EggNOG free text desc.FR47-like protein
EggNOG OGs28J24@1,2QREC@2759,37HYN@33090
EC2.3.1.258
COG Functional cat.S
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSecreted acetyltransferase (GNAT) domain protein
Ec32 orthologEc-12_005280.1
Exons5
Model size1689
Cds size1149
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.3540978-UTR-P-fluviatile_contig13:2894389..28943991622815582.3540978-UTR-P-fluviatile_contig13:2894389..2894399Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2894390..2894399 +
1693562343.9938095-UTR-P-fluviatile_contig13:2894389..28943991693562343.9938095-UTR-P-fluviatile_contig13:2894389..2894399Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2894390..2894399 +
1622815582.4163983-UTR-P-fluviatile_contig13:2897579..28981091622815582.4163983-UTR-P-fluviatile_contig13:2897579..2898109Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2897580..2898109 +
1693562344.0795982-UTR-P-fluviatile_contig13:2897579..28981091693562344.0795982-UTR-P-fluviatile_contig13:2897579..2898109Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 2897580..2898109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.3646543-CDS-P-fluviatile_contig13:2894399..28947551622815582.3646543-CDS-P-fluviatile_contig13:2894399..2894755Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2894400..2894755 +
1693562344.0202837-CDS-P-fluviatile_contig13:2894399..28947551693562344.0202837-CDS-P-fluviatile_contig13:2894399..2894755Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2894400..2894755 +
1622815582.3746629-CDS-P-fluviatile_contig13:2895309..28953731622815582.3746629-CDS-P-fluviatile_contig13:2895309..2895373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2895310..2895373 +
1693562344.0323172-CDS-P-fluviatile_contig13:2895309..28953731693562344.0323172-CDS-P-fluviatile_contig13:2895309..2895373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2895310..2895373 +
1622815582.3844109-CDS-P-fluviatile_contig13:2896199..28965921622815582.3844109-CDS-P-fluviatile_contig13:2896199..2896592Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2896200..2896592 +
1693562344.0417867-CDS-P-fluviatile_contig13:2896199..28965921693562344.0417867-CDS-P-fluviatile_contig13:2896199..2896592Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2896200..2896592 +
1622815582.3940449-CDS-P-fluviatile_contig13:2896656..28968631622815582.3940449-CDS-P-fluviatile_contig13:2896656..2896863Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2896657..2896863 +
1693562344.0532908-CDS-P-fluviatile_contig13:2896656..28968631693562344.0532908-CDS-P-fluviatile_contig13:2896656..2896863Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2896657..2896863 +
1622815582.4052534-CDS-P-fluviatile_contig13:2897450..28975791622815582.4052534-CDS-P-fluviatile_contig13:2897450..2897579Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2897451..2897579 +
1693562344.067781-CDS-P-fluviatile_contig13:2897450..28975791693562344.067781-CDS-P-fluviatile_contig13:2897450..2897579Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 2897451..2897579 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1927.1prot_P-fluviatile_contig13.1927.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 2894400..2897579 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1927.1

>prot_P-fluviatile_contig13.1927.1 ID=prot_P-fluviatile_contig13.1927.1|Name=mRNA_P-fluviatile_contig13.1927.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=383bp
MCIAFTLSTEASERRMRGSIVAVLGLYGVARGRAFAPPSTLVLGYRKQPL
RALLFSPERDDGGPIVTTASSTKPAAGWGSWEKVVSQRVEQEEVLKKLEP
PAGLHVRTITKGDIPTVSRLCIDTFRGPFQWFELPLQLIQEFVFFGQIQG
RLGRVTRNEIKHSMVIAEDTRQAGPGPGPGGSGGGGRGRGRGKVVGFLEI
GMLPKPTSSEESAIAGEALTAARAAAALAAAAAAANAKNVHKAGGEKVGG
LPSPPDTRLDPVAGEAAAAAAGRELPGGGGDGSTTAISMRRQPDVAYLAN
VVVDRRQRRRGIGRTMVNSAIQIVRELWPAEERIYVSVEQGNDVALALYQ
GMGFELAAIEDEMMARSRRRPPRIYLSKPLRD*
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mRNA from alignment at P-fluviatile_contig13:2894390..2898109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1927.1 ID=mRNA_P-fluviatile_contig13.1927.1|Name=mRNA_P-fluviatile_contig13.1927.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3720bp|location=Sequence derived from alignment at P-fluviatile_contig13:2894390..2898109+ (Porterinema fluviatile SAG_2381)
GGTGTTGTCCATGTGTATTGCGTTCACACTTTCAACAGAAGCTTCGGAAC
GACGAATGCGCGGGTCAATAGTTGCCGTCCTCGGCTTGTACGGAGTAGCT
CGTGGTCGAGCTTTTGCGCCGCCGTCTACCTTAGTGTTAGGGTACAGGAA
ACAGCCGCTGCGTGCGTTACTGTTCAGCCCCGAACGAGACGATGGCGGGC
CCATCGTGACCACGGCGTCTTCAACAAAGCCGGCAGCAGGGTGGGGCTCG
TGGGAGAAAGTTGTGTCTCAGCGTGTGGAGCAGGAAGAAGTACTGAAGAA
GCTCGAACCTCCAGCAGGACTTCACGTCCGAACGATAACGAAGGGCGACA
TTCCGACTGTCAGTAGGTGAGGGATGGAGTAGGTCGTGTCCCACTGTACA
GTGTCACCGGGTCCTTCTACTCACCTAAGCAGTGCTTGTTGAATTGGGGG
ATGGATGTGTCCCTCTCAGACAAAAAATCAAGTAGCATCTCCGTAGTCGT
CGTCTTTTGAGATTATGATGTATCAACTTCTCAGGTCATTTCTTCAGTTG
GCTGTACGCGTTTTATGATATACTATATCCAATATAGTGGATGTACCCAT
CAACATCCCGCGGTACCCTGATCGTGTCCGTCCTCGCTCTCCCGCCGGCT
CATCGCCCCCTCCACCCCCCAGCCATACCTTCCTTCGAAGGAATTATTGA
CGTCAACCTGTGCTTTGCCGCATGTTGGACGAGTTGAGGCCATGTCTGGC
GTAAACGGCTTAATCCTCATGTCAGGATTGGTCGATTCTCTTGCCCCATG
ATCGCACGGGAGCCAAGCCTAGCGTACATCCGTCTCCGCTTCTACAAATC
GCAAAATACCCGGTGCCTGTTGATCGTCTGATGACCGTCTCTTGTCCGTG
TCTCCGATTTCCATCGCCAGACTTTGCATCGACACATTCAGAGGGCCGTT
CCAGTGGTTCGAGCTTCCCTTGCAGCTAATCCAGGTACGCAGCATTGCTG
CAGCTCCCGCTGGTAAATTGGTGACTCAGCCTCGCTGCATGTGCTCGGAG
TTCAGTTCGCTTTCGTAGTCTCGAGGGGCTTTGTTTCGGTAGACTATGAG
CACTCGGTCTTGACTTGGTTCTGTCCATCCCGGCGCTTCGGAATCTGGCC
TGCCTTCCTCTGCTTCAAACCCGGCAAACGTACTAGCCACTGCTTTTCTA
GCCTGTGAAGTGAACATGCGCGTGAGAATGAGTTTCCGCAAACCGAACCC
CTTGATGCACGTGAATGCAAGGGATTCAGGGCAGGCCGATTATTCCTCGA
TACTGCTGGCGTTTGAAATACCGTTTTGCTTGCGCCCCCACACCTCCTCG
CTTGGCCCCTGTTGAACTGAATCGGCACGTTTCTCACGCCGATGGCTGCC
CGTCTGCCTTTTTTTGCCGTGGGGTAATGGCTCCGAGCTCGACCACTCGA
GGCGAGTCGCCTGCAGCAACGCAGAACGCAGAGCCCGAGCGCCGCTTCCA
CCACGGTCGACTTAAAGCGAATTGTTGCTCCGCCACCGTGTTCGAAGACC
ATTGAAGCTCTCTGGCGGCGGCGTGCATAAAAACCGTTTCGCGCCCGACG
ACCTCCAAATGACACTGCAACTGTACACGCGGGCAGGTCATGCAACGGCG
CGATGTGTTGACGCTGCCAAAAAAAAAGAGTTTCGTGCAATTTTATAGTT
CCCAAGCTGGATGAACTGGGCGATTCACGGATGGGCCTGACCGATCGGTC
GTCGCCTGCCGGCCCGAACGTTCGCCCCCCCTTTCCCCCGCGCGCTTTTT
CGAAGGACAGGAGTTCGTCTTTTTCGGCCAGATCCAGGGCCGCCTAGGTC
GCGTCACGCGGAACGAGATCAAGCACAGCATGGTCATCGCCGAAGACACG
CGCCAAGCCGGTCCCGGTCCCGGTCCCGGCGGTAGCGGCGGCGGCGGCAG
GGGCAGGGGCAGGGGCAAGGTGGTGGGCTTCCTCGAGATAGGGATGCTGC
CCAAGCCCACCTCGTCCGAGGAGAGCGCCATTGCGGGCGAGGCACTGACG
GCGGCTAGAGCGGCGGCCGCGCTGGCAGCAGCAGCGGCGGCTGCAAACGC
GAAGAACGTTCACAAAGCAGGAGGCGAGAAGGTCGGCGGGCTGCCGTCGC
CGCCGGACACGAGGTTAGATCCCGTCGCAGGAGAGGCGGCGGCGGCGGCG
GCGGTTGAAGAAAGGATCGTCGCAGGAAGAGGAGAAGGTGACAATGGGGT
GGAGGAGGGGGGGGGAGGGGCGGGAGCTTCCGGGGGGTGGGGGTGACGGC
AGCACGACAGCGATCAGCATGCGGAGGCAGCCGGACGTGGCGTACTTAGC
GAACGTCGTGGTCGACAGGCGGCAGCGGCGGAGGGGGATCGGCCGCACGA
TGGTAAACTCGGCCATCCAGATCGTGAGGGAACTGTGGCCCGCGGAGGAA
AGGATTTACGTCTCTGTCGAGCAGGTAAGCGACAGGTTACGGCGGGGCAT
CAGTAAGAGGGGATTCGCTTTTTTTTATATTAATGCGCGCTCTGCGACAA
AAGCGCAGTTCACGTGATGGGCGGGGATGGCTGGTGTGCTGTGACTCGAA
GACTTCGTCGCTGACATGGGCAGGTGGCCGCTTCTTCTCGGGCAAACCAG
CCGATTGTTCGTTGGAAGAAGCTGCTACCCGCACCTTTGTTATTCGTTAT
CGCTGGGGTCCATTTTGCCTGGACCAAGCCTGGACGAGGCGATGAACTTG
ACGTACAACCCGCCCGTTCCTTCTGACTTAACTGCTGTGGTAAGAGCTAT
GTCGTGAAATGCACCAAGCCCCTTCAGTCTTGATCTCAACCCGAACTACT
CGCCGGGATCTGCGCACGTGCACGCGAGGGGCTGACTCAGGCATCGGTGT
TGCTTGAGCAGGTCGAGGTCAATCGCCGTCAACAGATTTCGGTGACCCTC
GCGGAATCATGAACTTATCAATAGGTTTGCATCAAGGTGTGCGGGCCCCC
AATTCTTTTGTCGTGGGCTCGCCGCCTAAATCTCGATCGCCTCTCCTTCG
TAAACAAACAGGGCAACGACGTCGCCCTCGCCTTGTATCAAGGGATGGGC
TTCGAGCTGGCCGCGATTGAGGACGAGATGATGGCGAGAAGCCGAAGACG
CCCGCCTCGGATATACCTCTCCAAGCCCTTACGCGATTAGTACATCAATC
GAAGGCGCTGATTGTGGGTGGCCGCACGAGCCGTGGTTGCCACTTCGAGA
CCGAGTCTTTAGACCATCGATTTGTAGTTTATCCTGTACAGACCATCAGA
CACTAGAACGGAGCACCCGAGCGAGATGGTGAGATGCAACAATTTCAAGC
TGTGATTTACCCGTGTTGAGGCCGCTGTTGACCTCTCTGCCGTCCTTGCA
TTTTTAGAGTTTTTCCAGCGATTTTGTCGCGACTGCATTCTTCCGTTGAT
AACGGTCAGCGGTGTTCCCCCGCGCGGATGAGTCGGATCAACTGAGGCCT
GGTGCTGAGCGGCATGAACGCGTTACCCATTCTACGACTTGAAATGATTT
GTAAAGCCGCTGCCACGAACTTGCAGCGCTGTCGAGGGGTTCTGCTTGAC
TGCACGCGTTGTGAGAGGGAGGGGCAGCATTGACCGAAGAAGGTGCAAGC
TTGTTGGTCGCCTCGTCCCGCCGCGATCTTCGATGAAATCTGGGCGTCAT
TCTTCGCACGACAGTTGTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:2894390..2898109+

>mRNA_P-fluviatile_contig13.1927.1 ID=mRNA_P-fluviatile_contig13.1927.1|Name=mRNA_P-fluviatile_contig13.1927.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2298bp|location=Sequence derived from alignment at P-fluviatile_contig13:2894390..2898109+ (Porterinema fluviatile SAG_2381)
ATGTGTATTGCGTTCACACTTTCAACAGAAGCTTCGGAACGACGAATGCG
CGGGTCAATAGTTGCCGTCCTCGGCTTGTACGGAGTAGCTCGTGGTCGAG
CTTTTGCGCCGCCGTCTACCTTAGTGTTAGGGTACAGGAAACAGCCGCTG
CGTGCGTTACTGTTCAGCCCCGAACGAGACGATGGCGGGCCCATCGTGAC
CACGGCGTCTTCAACAAAGCCGGCAGCAGGGTGGGGCTCGTGGGAGAAAG
TTGTGTCTCAGCGTGTGGAGCAGGAAGAAGTACTGAAGAAGCTCGAACCT
CCAGCAGGACTTCACGTCCGAACGATAACGAAGGGCGACATTCCGACTGT
CAGTAGATGTGTATTGCGTTCACACTTTCAACAGAAGCTTCGGAACGACG
AATGCGCGGGTCAATAGTTGCCGTCCTCGGCTTGTACGGAGTAGCTCGTG
GTCGAGCTTTTGCGCCGCCGTCTACCTTAGTGTTAGGGTACAGGAAACAG
CCGCTGCGTGCGTTACTGTTCAGCCCCGAACGAGACGATGGCGGGCCCAT
CGTGACCACGGCGTCTTCAACAAAGCCGGCAGCAGGGTGGGGCTCGTGGG
AGAAAGTTGTGTCTCAGCGTGTGGAGCAGGAAGAAGTACTGAAGAAGCTC
GAACCTCCAGCAGGACTTCACGTCCGAACGATAACGAAGGGCGACATTCC
GACTGTCAGTAGACTTTGCATCGACACATTCAGAGGGCCGTTCCAGTGGT
TCGAGCTTCCCTTGCAGCTAATCCAGACTTTGCATCGACACATTCAGAGG
GCCGTTCCAGTGGTTCGAGCTTCCCTTGCAGCTAATCCAGGAGTTCGTCT
TTTTCGGCCAGATCCAGGGCCGCCTAGGTCGCGTCACGCGGAACGAGATC
AAGCACAGCATGGTCATCGCCGAAGACACGCGCCAAGCCGGTCCCGGTCC
CGGTCCCGGCGGTAGCGGCGGCGGCGGCAGGGGCAGGGGCAGGGGCAAGG
TGGTGGGCTTCCTCGAGATAGGGATGCTGCCCAAGCCCACCTCGTCCGAG
GAGAGCGCCATTGCGGGCGAGGCACTGACGGCGGCTAGAGCGGCGGCCGC
GCTGGCAGCAGCAGCGGCGGCTGCAAACGCGAAGAACGTTCACAAAGCAG
GAGGCGAGAAGGTCGGCGGGCTGCCGTCGCCGCCGGACACGAGGTTAGAT
CCCGTCGCAGGAGAGGCGGCGGCGGCGGCGGCGGAGTTCGTCTTTTTCGG
CCAGATCCAGGGCCGCCTAGGTCGCGTCACGCGGAACGAGATCAAGCACA
GCATGGTCATCGCCGAAGACACGCGCCAAGCCGGTCCCGGTCCCGGTCCC
GGCGGTAGCGGCGGCGGCGGCAGGGGCAGGGGCAGGGGCAAGGTGGTGGG
CTTCCTCGAGATAGGGATGCTGCCCAAGCCCACCTCGTCCGAGGAGAGCG
CCATTGCGGGCGAGGCACTGACGGCGGCTAGAGCGGCGGCCGCGCTGGCA
GCAGCAGCGGCGGCTGCAAACGCGAAGAACGTTCACAAAGCAGGAGGCGA
GAAGGTCGGCGGGCTGCCGTCGCCGCCGGACACGAGGTTAGATCCCGTCG
CAGGAGAGGCGGCGGCGGCGGCGGCGGGGCGGGAGCTTCCGGGGGGTGGG
GGTGACGGCAGCACGACAGCGATCAGCATGCGGAGGCAGCCGGACGTGGC
GTACTTAGCGAACGTCGTGGTCGACAGGCGGCAGCGGCGGAGGGGGATCG
GCCGCACGATGGTAAACTCGGCCATCCAGATCGTGAGGGAACTGTGGCCC
GCGGAGGAAAGGATTTACGTCTCTGTCGAGCAGGGGCGGGAGCTTCCGGG
GGGTGGGGGTGACGGCAGCACGACAGCGATCAGCATGCGGAGGCAGCCGG
ACGTGGCGTACTTAGCGAACGTCGTGGTCGACAGGCGGCAGCGGCGGAGG
GGGATCGGCCGCACGATGGTAAACTCGGCCATCCAGATCGTGAGGGAACT
GTGGCCCGCGGAGGAAAGGATTTACGTCTCTGTCGAGCAGGGCAACGACG
TCGCCCTCGCCTTGTATCAAGGGATGGGCTTCGAGCTGGCCGCGATTGAG
GACGAGATGATGGCGAGAAGCCGAAGACGCCCGCCTCGGATATACCTCTC
CAAGCCCTTACGCGATTAGGGCAACGACGTCGCCCTCGCCTTGTATCAAG
GGATGGGCTTCGAGCTGGCCGCGATTGAGGACGAGATGATGGCGAGAAGC
CGAAGACGCCCGCCTCGGATATACCTCTCCAAGCCCTTACGCGATTAG
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