mRNA_P-fluviatile_contig13.1709.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-fluviatile_contig13.1709.1
Unique Name	mRNA_P-fluviatile_contig13.1709.1
Type	mRNA
Organism	Porterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)

Homology

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BLAST of mRNA_P-fluviatile_contig13.1709.1 vs. uniprot
Match: D7FKK1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKK1_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 4.040e-84
Identity = 169/329 (51.37%), Postives = 214/329 (65.05%), Query Frame = 1

Query:   55 MTTWKRFTAAVDLNAQSFLKNKKFSREKRTFSWDWHAWNLALVSTPSLLLGFCLHGVEKRMEEEAAIREEIQERTGVSSRGFLIPKKDVRDEVLGMLSAGNQGRTKGAGGKGQGPGGGKGDDATGR---MPADFESIERRLAAIESVLGVKGDSSSAAE-ANVHDRRGPVVDSTPSSATDSNRDRKAVATKTAGNEKNSGDDVAHEQSTFDWAMETASLAVSWVLKTGEREGKRLLKMGQDWMG-GEKQEGVLGTEIPGSKEGETAEERAPQKTLADVHKQGELAAGRTLDSVGTSNPSSERQKRADAGGESTRSTEAGWRRGKLDEID 1026
            M  WKRFT AVD +AQSFLKNKKFSREKR F+WDWHAWNLA VSTPSL+L + LHGVEK+M E+AAIREEIQERTGVSSRGFLIPKK+VR+EVLGMLSAGNQ     AGG+G     G G+   G    +PAD ESIE RLA IE +L ++G SSS+   A + +  GP+ DST S  + S + ++  + + A ++ +S      E ST D A+ET S A SW+L+TGE +GK     G+ WM   E+QE    +E PGS++  T  +  P    ADV ++ +LAA    + V  S+  S  ++ A    +S  S    WRRGKLDE D
Sbjct:    1 MAIWKRFTGAVDSSAQSFLKNKKFSREKRKFTWDWHAWNLAFVSTPSLVLAYYLHGVEKQMLEDAAIREEIQERTGVSSRGFLIPKKEVREEVLGMLSAGNQ--PGNAGGEG-----GAGEQQLGHERHVPADSESIEGRLATIERMLSMQGGSSSSTPGAGIDNGSGPMTDSTLSGTSGSGQGKRVHSARNAASKADSSSGA--EVSTLDRAIETVSAAGSWLLQTGEAQGKXXXXXGRSWMAEDERQEDATPSEKPGSRKIGTGHQE-PGANHADVRRREDLAAKALAERVANSSAGSTGEESALVESDSKGSHSGAWRRGKLDEND 319

The following BLAST results are available for this feature:

BLAST of mRNA_P-fluviatile_contig13.1709.1 vs. uniprot

BLAST of mRNA_P-fluviatile_contig13.1709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FKK1_ECTSI	4.040e-84	51.37	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-fluviatile_contig13	contig	P-fluviatile_contig13:901520..903867 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Porterinema fluviatile SAG_2381	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-12_001790.1
Exons	4
Model size	1114
Cds size	984
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-fluviatile_contig13.1709.1	prot_P-fluviatile_contig13.1709.1	Porterinema fluviatile SAG_2381	polypeptide	P-fluviatile_contig13 901574..903791 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815549.9483964-UTR-P-fluviatile_contig13:901519..901573	1622815549.9483964-UTR-P-fluviatile_contig13:901519..901573	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig13 901520..901573 +
1693562223.2852278-UTR-P-fluviatile_contig13:901519..901573	1693562223.2852278-UTR-P-fluviatile_contig13:901519..901573	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig13 901520..901573 +
1622815550.0072324-UTR-P-fluviatile_contig13:903791..903867	1622815550.0072324-UTR-P-fluviatile_contig13:903791..903867	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig13 903792..903867 +
1693562223.326771-UTR-P-fluviatile_contig13:903791..903867	1693562223.326771-UTR-P-fluviatile_contig13:903791..903867	Porterinema fluviatile SAG_2381	UTR	P-fluviatile_contig13 903792..903867 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622815549.9601452-CDS-P-fluviatile_contig13:901573..901650	1622815549.9601452-CDS-P-fluviatile_contig13:901573..901650	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 901574..901650 +
1693562223.293033-CDS-P-fluviatile_contig13:901573..901650	1693562223.293033-CDS-P-fluviatile_contig13:901573..901650	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 901574..901650 +
1622815549.9713285-CDS-P-fluviatile_contig13:902212..902474	1622815549.9713285-CDS-P-fluviatile_contig13:902212..902474	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 902213..902474 +
1693562223.300446-CDS-P-fluviatile_contig13:902212..902474	1693562223.300446-CDS-P-fluviatile_contig13:902212..902474	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 902213..902474 +
1622815549.9852238-CDS-P-fluviatile_contig13:902859..903010	1622815549.9852238-CDS-P-fluviatile_contig13:902859..903010	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 902860..903010 +
1693562223.3083382-CDS-P-fluviatile_contig13:902859..903010	1693562223.3083382-CDS-P-fluviatile_contig13:902859..903010	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 902860..903010 +
1622815549.9959357-CDS-P-fluviatile_contig13:903297..903791	1622815549.9959357-CDS-P-fluviatile_contig13:903297..903791	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 903298..903791 +
1693562223.318683-CDS-P-fluviatile_contig13:903297..903791	1693562223.318683-CDS-P-fluviatile_contig13:903297..903791	Porterinema fluviatile SAG_2381	CDS	P-fluviatile_contig13 903298..903791 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-fluviatile_contig13:901520..903867+
coding sequence from alignment at P-fluviatile_contig13:901520..903867+

protein sequence of mRNA_P-fluviatile_contig13.1709.1

>prot_P-fluviatile_contig13.1709.1 ID=prot_P-fluviatile_contig13.1709.1|Name=mRNA_P-fluviatile_contig13.1709.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=328bp
MTTWKRFTAAVDLNAQSFLKNKKFSREKRTFSWDWHAWNLALVSTPSLLL
GFCLHGVEKRMEEEAAIREEIQERTGVSSRGFLIPKKDVRDEVLGMLSAG
NQGRTKGAGGKGQGPGGGKGDDATGRMPADFESIERRLAAIESVLGVKGD
SSSAAEANVHDRRGPVVDSTPSSATDSNRDRKAVATKTAGNEKNSGDDVA
HEQSTFDWAMETASLAVSWVLKTGEREGKRLLKMGQDWMGGEKQEGVLGT
EIPGSKEGETAEERAPQKTLADVHKQGELAAGRTLDSVGTSNPSSERQKR
ADAGGESTRSTEAGWRRGKLDEIDEHR*

mRNA from alignment at P-fluviatile_contig13:901520..903867+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-fluviatile_contig13.1709.1 ID=mRNA_P-fluviatile_contig13.1709.1|Name=mRNA_P-fluviatile_contig13.1709.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2348bp|location=Sequence derived from alignment at P-fluviatile_contig13:901520..903867+ (Porterinema fluviatile SAG_2381)
ATCAGCACTCAGCACAGCTTCACAGCGCGTTGACGGAAGGCTAACAGCGC
CAGAATGACGACGTGGAAGAGATTCACTGCAGCGGTGGATTTGAATGCTC
AGTCATTCCTCAAGAACAAGAAGTTCAGCAGGTAAGAACAAACCTAAGGT
GTACTGCTCTGCTGGATGCTGCTCCACGCGACGCCGGCACCGAGGTATGG
CGCCGTCACCAGTGCTTGTGCCGTCCAAGAGCGCGGTTTGTGAAGCTCGA
TGCCCTCTCTAGCTCTGCCGTTATTCTTGGCGAGTCCATTTGACATTTTC
GCCTTCTATCAACAGGGCCCGGCTGGAGAATATCGTGATTTGGTCCAAGC
AGCACAGCAGCACTTTACCGCGTACGCGCCCAAAGGACGCTCGGCTTGTC
CACAACAGGCTGGGTGGTTGCGACAACACATTGTCAGCGCCACTCTAAAG
ACGTATCGGCGTTCATGGATGCGGAGAATCGAACTCATTTGAAAATCGGC
GTATAGAGTGTGGTATCTTCCGTCATATCCTTGAAAACCCCGGAAACGAG
TTCAACAGCGCACAAAACAGCGAACAAAGCAGCGAACAAAGCAGCGTGGT
TTCGCAGCATCTACGCATGCATTAGTCTACACCGATATCATAGCGACGCT
ATCTTCACCTCTTTATTCTCCACTTCATGTTGCACACCCACAGGGAAAAA
AGGACGTTCTCTTGGGATTGGCATGCGTGGAACTTGGCCCTCGTGTCCAC
CCCTTCCCTGCTGCTAGGCTTCTGCCTCCATGGGGTCGAGAAGCGAATGG
AGGAGGAAGCGGCCATTCGGGAGGAGATTCAGGAACGCACGGGAGTTAGC
AGCCGCGGCTTTTTGATACCGAAGAAGGACGTTCGAGATGAGGTGCTGGG
TATGCTGAGCGCAGGAAACCAGGGCAGGACGAAGGGCGCTGGCGGCAAAG
GACAGGTACCACATTCCCTGACGCTATCTCGATGATTGACAGTCGCCGCA
TCATTTATTTTCTCCGCTCGCCAAGTGTTTGTTCGGATCGCCGATGCGGA
TTGGGTTATGTCGGGGGATAAAGCAATGCTCTTGTTTAGTTGAGGAATCA
ATTTGGACGTCAAACGTGCATTAGGGCGGAGTTGGGCAATAGATTCTTAC
GGACCTGTAGCTGTTGTCTTACCAGCACCCATCGCGGGAAACTCGTGGCG
GATCACGATGCATTCCTCTCTCCCATGAACCCCACGTACCCCAGAGCACC
GACAAACGAACACCATCAGCCTGCTCCTTCAAACTCTCCCTGTTCTCGCA
TCCCTCGTGTCGGTTGGCTTGCTCCGAACTGATTGGTTAGGGCCCCGGCG
GAGGCAAAGGGGATGATGCTACGGGCAGGATGCCCGCCGACTTCGAATCC
ATTGAACGTAGACTGGCTGCCATTGAGAGCGTTCTCGGTGTCAAGGGCGA
TTCCAGCTCGGCAGCAGAAGCGAACGTCCACGACAGACGAGGTGAGACTG
GTCGAAGGGGACGCGCAAGAGAGGGCACCGTCCCATGCAGCGGGGGACGC
AGAGTGTTTTTTCCCGAAAGAAACGCTAATGACGGAGAGGCTGCGAGAGC
GTTCTCTGAAATGTCTTGACCTAATTCAGAACAAAACCGTCGATTCATCG
ATCTGAGATAGGCATGCGTGGCGATTGTTCCTGCTGTTCCCGCCATCAAT
ACAGCAACATCAATGCAGCGCTCTGTCTCTGCAACCCTGACAAGAAGTCT
CCTTCGACAATCCGTCCCGTATTCGCAGGGCCAGTTGTGGATTCGACTCC
CAGCAGCGCAACTGATTCCAACCGAGATAGGAAAGCCGTCGCGACGAAAA
CGGCAGGAAATGAAAAAAACTCCGGAGATGACGTAGCGCACGAGCAATCG
ACCTTCGACTGGGCGATGGAGACCGCATCACTCGCGGTTAGCTGGGTGCT
CAAAACGGGCGAGAGAGAAGGAAAACGCCTCTTGAAAATGGGCCAGGATT
GGATGGGCGGGGAAAAACAGGAAGGCGTACTCGGAACGGAAATCCCTGGG
TCAAAGGAGGGCGAGACGGCTGAGGAACGTGCGCCACAAAAAACACTGGC
GGATGTTCACAAGCAGGGGGAGCTGGCTGCAGGAAGGACTTTGGATAGCG
TCGGTACGAGTAATCCAAGTAGCGAAAGGCAAAAAAGAGCAGATGCCGGG
GGCGAGAGCACGAGGAGCACGGAGGCGGGGTGGCGCCGAGGGAAGTTGGA
TGAAATTGACGAGCACAGATGACCCTGTTTTCTTCTTCGAACAGTTGCAT
TGCCAAGAGTTTCTCATGACAAATATATCAAGGCCGGCTTTTCCCATG

Coding sequence (CDS) from alignment at P-fluviatile_contig13:901520..903867+

>mRNA_P-fluviatile_contig13.1709.1 ID=mRNA_P-fluviatile_contig13.1709.1|Name=mRNA_P-fluviatile_contig13.1709.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1968bp|location=Sequence derived from alignment at P-fluviatile_contig13:901520..903867+ (Porterinema fluviatile SAG_2381)
ATGACGACGTGGAAGAGATTCACTGCAGCGGTGGATTTGAATGCTCAGTC
ATTCCTCAAGAACAAGAAGTTCAGCAGATGACGACGTGGAAGAGATTCAC
TGCAGCGGTGGATTTGAATGCTCAGTCATTCCTCAAGAACAAGAAGTTCA
GCAGGGAAAAAAGGACGTTCTCTTGGGATTGGCATGCGTGGAACTTGGCC
CTCGTGTCCACCCCTTCCCTGCTGCTAGGCTTCTGCCTCCATGGGGTCGA
GAAGCGAATGGAGGAGGAAGCGGCCATTCGGGAGGAGATTCAGGAACGCA
CGGGAGTTAGCAGCCGCGGCTTTTTGATACCGAAGAAGGACGTTCGAGAT
GAGGTGCTGGGTATGCTGAGCGCAGGAAACCAGGGCAGGACGAAGGGCGC
TGGCGGCAAAGGACAGGGAAAAAAGGACGTTCTCTTGGGATTGGCATGCG
TGGAACTTGGCCCTCGTGTCCACCCCTTCCCTGCTGCTAGGCTTCTGCCT
CCATGGGGTCGAGAAGCGAATGGAGGAGGAAGCGGCCATTCGGGAGGAGA
TTCAGGAACGCACGGGAGTTAGCAGCCGCGGCTTTTTGATACCGAAGAAG
GACGTTCGAGATGAGGTGCTGGGTATGCTGAGCGCAGGAAACCAGGGCAG
GACGAAGGGCGCTGGCGGCAAAGGACAGGGCCCCGGCGGAGGCAAAGGGG
ATGATGCTACGGGCAGGATGCCCGCCGACTTCGAATCCATTGAACGTAGA
CTGGCTGCCATTGAGAGCGTTCTCGGTGTCAAGGGCGATTCCAGCTCGGC
AGCAGAAGCGAACGTCCACGACAGACGAGGGCCCCGGCGGAGGCAAAGGG
GATGATGCTACGGGCAGGATGCCCGCCGACTTCGAATCCATTGAACGTAG
ACTGGCTGCCATTGAGAGCGTTCTCGGTGTCAAGGGCGATTCCAGCTCGG
CAGCAGAAGCGAACGTCCACGACAGACGAGGGCCAGTTGTGGATTCGACT
CCCAGCAGCGCAACTGATTCCAACCGAGATAGGAAAGCCGTCGCGACGAA
AACGGCAGGAAATGAAAAAAACTCCGGAGATGACGTAGCGCACGAGCAAT
CGACCTTCGACTGGGCGATGGAGACCGCATCACTCGCGGTTAGCTGGGTG
CTCAAAACGGGCGAGAGAGAAGGAAAACGCCTCTTGAAAATGGGCCAGGA
TTGGATGGGCGGGGAAAAACAGGAAGGCGTACTCGGAACGGAAATCCCTG
GGTCAAAGGAGGGCGAGACGGCTGAGGAACGTGCGCCACAAAAAACACTG
GCGGATGTTCACAAGCAGGGGGAGCTGGCTGCAGGAAGGACTTTGGATAG
CGTCGGTACGAGTAATCCAAGTAGCGAAAGGCAAAAAAGAGCAGATGCCG
GGGGCGAGAGCACGAGGAGCACGGAGGCGGGGTGGCGCCGAGGGAAGTTG
GATGAAATTGACGAGCACAGATGAGGCCAGTTGTGGATTCGACTCCCAGC
AGCGCAACTGATTCCAACCGAGATAGGAAAGCCGTCGCGACGAAAACGGC
AGGAAATGAAAAAAACTCCGGAGATGACGTAGCGCACGAGCAATCGACCT
TCGACTGGGCGATGGAGACCGCATCACTCGCGGTTAGCTGGGTGCTCAAA
ACGGGCGAGAGAGAAGGAAAACGCCTCTTGAAAATGGGCCAGGATTGGAT
GGGCGGGGAAAAACAGGAAGGCGTACTCGGAACGGAAATCCCTGGGTCAA
AGGAGGGCGAGACGGCTGAGGAACGTGCGCCACAAAAAACACTGGCGGAT
GTTCACAAGCAGGGGGAGCTGGCTGCAGGAAGGACTTTGGATAGCGTCGG
TACGAGTAATCCAAGTAGCGAAAGGCAAAAAAGAGCAGATGCCGGGGGCG
AGAGCACGAGGAGCACGGAGGCGGGGTGGCGCCGAGGGAAGTTGGATGAA
ATTGACGAGCACAGATGA