mRNA_P-fluviatile_contig13.1688.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1688.1
Unique NamemRNA_P-fluviatile_contig13.1688.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig13.1688.1 vs. uniprot
Match: A0A6H5KLY6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLY6_9PHAE)

HSP 1 Score: 445 bits (1144), Expect = 1.580e-150
Identity = 229/378 (60.58%), Postives = 274/378 (72.49%), Query Frame = 2
Query:   74 TMCKRALCKSSRSRHFTGAPITASE----------EGTSNNGRSEYFKSSPDSCAGSASSFDWGSAFTERAFRALKACEFFERSGVRHLCVSKCYFKAYEPFRRWHALRLEVARAGSSTRVLDGWSIRMDGGEKAHHSWCIGYISPDGREYASAKLALGALGLGRAATLCPTSSPTLRRNRGSSSGSPQQALAAHNATRHYPDGPAYLLKNPPAGAFPASPFGLIEELLTDDPWKLLIGCIMLNQTSRSQTDRVLWDFLEHFPTAAVAASASVEGVARIVAPLGLQKRRPVAIIRFSQEYLSKPWKKPEELFWVGKYASDAHKIFIERRWQEVHPEDHALNWLVEWMRGTQEV*RAHRTSQPTVPLLEELKLDFTSRS 1177
            T  KRA C    SRHF      AS+          +G     RSEYF S+PDSCAGSASSFDWGSAFTE+AF ALK+CE FE +GVRH+C ++CYF+AYEP R+WHALRL VAR G+ST VL GW ++MD G+ A  SW I Y++PDG  +   K  L ALGLG   +  PTS P+LRR   + + SPQ   AA    RH+P+G AYLLKNP AG FP SPFGLIEELLTDDPWKLLIGCIMLNQT+RSQ D VL  FLE FPTA VAA+ASV+ + R+VAPLGLQ+RRP+AIIRFSQEYLSK W   +EL+WVGKYA+DAHKIFIER+W+EV P+DHALNW VEWMRG Q+       ++ +VP LE +  D ++ +
Sbjct:   20 TRRKRAPCPRVSSRHFDTESKAASKASADQLPKAFKGLKGERRSEYFTSTPDSCAGSASSFDWGSAFTEKAFFALKSCEHFEHTGVRHMCKNRCYFRAYEPVRKWHALRLAVARVGASTGVLTGWCVQMDRGQTAEDSWRIRYVAPDGSVFPCVKPVLKALGLGHGVSGYPTSPPSLRRKSRTPTTSPQPLPAACATIRHHPNGSAYLLKNPRAGTFPPSPFGLIEELLTDDPWKLLIGCIMLNQTTRSQMDPVLVRFLEKFPTADVAAAASVDEMTRVVAPLGLQERRPIAIIRFSQEYLSKAWTNVKELYWVGKYAADAHKIFIERKWREVQPDDHALNWWVEWMRGAQQAEEPLSAAERSVPALEVVGRDGSANT 397          
BLAST of mRNA_P-fluviatile_contig13.1688.1 vs. uniprot
Match: A0A835Z3C1_9STRA (DNA glycosylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3C1_9STRA)

HSP 1 Score: 142 bits (357), Expect = 7.290e-37
Identity = 68/129 (52.71%), Postives = 89/129 (68.99%), Query Frame = 2
Query:  695 PASPFGLIEELLTDDPWKLLIGCIMLNQTSRSQTDRVLWDFLEHFPTAAVAASASVEGVARIVAPLGLQKRRPVAIIRFSQEYLSKPWKKPEELFWVGKYASDAHKIFIERRWQEVHPEDHALNWLVEW 1081
            P SPFGL+EELL  DPW+LL+ CIMLNQTSR Q D VL  FL+  PT   AA A    +A ++ PLGL K+RPVA++RFS+EYL+  W+    L WVG+Y  DA+ IF+ ++W+ V P+D  L   V+W
Sbjct:    2 PLSPFGLLEELLWYDPWRLLMACIMLNQTSRRQVDPVLAQFLDTHPTPESAAKADPTALAPMLKPLGLNKKRPVAVVRFSREYLA--WRSGRALHWVGQYGVDAYDIFVLQKWETVTPDDSVLRCYVDW 128          
BLAST of mRNA_P-fluviatile_contig13.1688.1 vs. uniprot
Match: E1Z2K4_CHLVA (ENDO3c domain-containing protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z2K4_CHLVA)

HSP 1 Score: 137 bits (346), Expect = 3.230e-35
Identity = 63/130 (48.46%), Postives = 88/130 (67.69%), Query Frame = 2
Query:  695 PASPFGLIEELLTDDPWKLLIGCIMLNQTSRSQTDRVLWDFLEHFPTAAVAASASVEGVARIVAPLGLQKRRPVAIIRFSQEYLSKPWKKPEELFWVGKYASDAHKIFIERRWQEVHPEDHALNWLVEWM 1084
            P SPFGL+EE L DDPWKLL+ C++LN+TS +Q  +V+W      PT A A +A V+ V  ++ PLGL ++R  AI + SQ+YL K W+ P EL+ +GKYA+DA+ +F   RW+EV PED  L    +W+
Sbjct:    4 PVSPFGLLEEELFDDPWKLLVACMLLNKTSGAQVRKVIWQLFALCPTPAAAIAADVQQVQALIQPLGLFRKRAAAIQQLSQDYLYKQWRDPTELYGIGKYAADAYHMFCRGRWREVAPEDKDLRRYRDWL 133          
BLAST of mRNA_P-fluviatile_contig13.1688.1 vs. uniprot
Match: UPI001B35343A (methyl-CpG-binding domain protein 4 isoform X3 n=1 Tax=Ochotona curzoniae TaxID=130825 RepID=UPI001B35343A)

HSP 1 Score: 139 bits (351), Expect = 2.440e-34
Identity = 93/244 (38.11%), Postives = 128/244 (52.46%), Query Frame = 2
Query:  392 SSTRVLDGWS-IRMDGGEKAHHSWCIGYISPDGREYASAKLALGALGLGRAATLCPTSSP--TLRRNRGSSSGSPQQALAAHNATRHYPDGPAYLLKNPPAGAF-----PASPFGLIEELLTDDPWKLLIGCIMLNQTSRSQTDRVLWDFLEHFPTAAVAASASVEGVARIVAPLGLQKRRPVAIIRFSQEYLSKPWKKPEELFWVGKYASDAHKIFIERRWQEVHPEDHALNWLVEWMRGTQE 1099
            S   V  GW  +  DG E+A         S +G        A   LG G AAT CP S P  T+ R +       ++  + + ++++   G    L  P   AF     P SPF L++E L  DPWKLLI  I LN+TS      VLW+FLE +P+A  A +A    V+ ++ PLGL   R   II+FS EYL+K WK P EL+ +GKY +D+++IF    W++VHPEDH LN   +W+    E
Sbjct:   30 SRDEVATGWERVGEDGIEEAMCG------SSEGNPLLPDPTAAAELG-GTAATECPRSVPEDTIPRTQ-----IERRKTSLYFSSKYNNAG----LSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGRMAIPVLWEFLEKYPSAEAARAADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKQWKYPIELYGIGKYGNDSYRIFCINEWKQVHPEDHKLNKYHDWLWENHE 257          
BLAST of mRNA_P-fluviatile_contig13.1688.1 vs. uniprot
Match: A0A516AGE4_LINPO (Methyl-CpG-binding domain protein 4 n=1 Tax=Lingulodinium polyedra TaxID=160621 RepID=A0A516AGE4_LINPO)

HSP 1 Score: 147 bits (371), Expect = 5.980e-34
Identity = 105/293 (35.84%), Postives = 141/293 (48.12%), Query Frame = 2
Query:  269 KACE-FFERSGVRHLCVSKCYFKAYEPFRRWHALRLEVARAGSSTRVLDGWSIRMDGGEKAHHS--WCIGYISPDGREYASAKLALGAL-------GLGRAATLCPTSSPTLRRNRGSSSGSPQQALAAHNATRHYPDGPAYLLKNPPAGAFPASPFGLIEELLTDDPWKLLIGCIMLNQTSRSQTDRVLWDFLEHFPTAAVAASASVEGVARIVAPLGLQKRRPVAIIRFSQEYLSK--------PWKKPEELFWVGKYASDAHKIFIERRWQEVHPEDHALNWLVEWMRGT 1093
            K C  ++E    RHLC   CYF+ YEP R+ HALR   AR+      L GW+ R+      H S  WC+    P G    SAK A  AL        L  AA+  P+  P      G+S     Q   AH                      P SPFGL+EE+LT +PW+LL+ C++LN+T R   DR+L  F + +P+A     A V  +  I+APLGL ++R   + RFS+EYL          P  +   L  VG+YA DAH++F+  R   V P D  L W VE+ + T
Sbjct:  901 KQCNVYWETGSCRHLCEHLCYFREYEPARQLHALRCR-ARSHPLRPSLQGWTARL---ALTHESPFWCVVLHDPSGAVRGSAKDAWTALVNDALDAPLPGAASAPPSPLPLSSSQAGASE---MQHSFAH----------------------PRSPFGLVEEVLTGEPWQLLVACLLLNRTGRIVVDRLLGRFFQRWPSAEALVGADVAELESILAPLGLHRKRSRMLCRFSREYLEAVAELGSPLPLSRLRRLHGVGRYAYDAHELFV--RGVLVQPTDIYLGWFVEYHQQT 1162          
BLAST of mRNA_P-fluviatile_contig13.1688.1 vs. uniprot
Match: A0A7R9TQ64_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TQ64_9VIRI)

HSP 1 Score: 139 bits (349), Expect = 7.920e-34
Identity = 68/138 (49.28%), Postives = 93/138 (67.39%), Query Frame = 2
Query:  680 PAGAFPASPFGLIEELLTDDPWKLLIGCIMLNQTSRSQTDRVLWDFLEHFPTA-AVAASASVEGVARIVAPLGLQKRRPVAIIRFSQEYLSKPWKKPEELFWVGKYASDAHKIFIERRWQEVHPEDHALNWLVEWMRG 1090
            P    P SP+GL+EEL   +PWKLL+ C++LN T+R Q DRVL      +PTA A+AA+     + R++APLGLQ+RR  +++RFS+EY  KPW    EL  VGKYA+DA+ IFI  RW+E  P+DHALN+   ++  
Sbjct:  136 PGWLAPHSPYGLLEELYRREPWKLLVSCMLLNCTTRLQVDRVLPALFNRYPTARALAAAPDAAELERLLAPLGLQRRRSKSLLRFSREYTEKPWADVMELHGVGKYAADAYAIFILGRWRETRPDDHALNFYHRFLES 273          
BLAST of mRNA_P-fluviatile_contig13.1688.1 vs. uniprot
Match: A0A2P6VLS1_9CHLO (Methyl-binding domain 4 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VLS1_9CHLO)

HSP 1 Score: 140 bits (352), Expect = 1.210e-33
Identity = 79/190 (41.58%), Postives = 108/190 (56.84%), Query Frame = 2
Query:  524 LGLGRAATLCPTSSPTLRRNRGSSSGSPQQALAAHNATRHYPDGPAYLLKNPPAGAFPASPFGLIEELLTDDPWKLLIGCIMLNQTSRSQTDRVLWDFLEHFPTAAVAASASVEGVARIVAPLGLQKRRPVAIIRFSQEYLSKPWKKPEELFWVGKYASDAHKIFIERRWQEVHPEDHALNWLVEWMRGT 1093
            LGL  A     TS P      GSS  +P  A       +   D P   L  PP      SP+GL+EE L DDPWKLL+ C++LN+TS +Q  +V+W+     PT A A +A V+ V  ++ PLGL ++R +AI + S EYL K W+ P EL+ +GKYA+DA+ +F   RW+EV P+D  L    EW+  T
Sbjct:  143 LGLSAAKRRRSTSHPA-----GSSPSAPSPAAGTAQQAQQEAD-PRLCLWEPPV-----SPYGLLEEELYDDPWKLLVACMLLNKTSGAQVRKVIWELFSLCPTPAAAIAADVQQVQNLIQPLGLFRKRALAIQQLSHEYLYKVWRDPTELYGIGKYAADAYLMFSRGRWREVQPDDKDLKRYHEWLEST 321          
BLAST of mRNA_P-fluviatile_contig13.1688.1 vs. uniprot
Match: UPI0009A268CF (methyl-CpG-binding domain protein 4 isoform X1 n=2 Tax=Rhincodon typus TaxID=259920 RepID=UPI0009A268CF)

HSP 1 Score: 142 bits (359), Expect = 2.340e-33
Identity = 68/135 (50.37%), Postives = 91/135 (67.41%), Query Frame = 2
Query:  695 PASPFGLIEELLTDDPWKLLIGCIMLNQTSRSQTDRVLWDFLEHFPTAAVAASASVEGVARIVAPLGLQKRRPVAIIRFSQEYLSKPWKKPEELFWVGKYASDAHKIFIERRWQEVHPEDHALNWLVEWMRGTQE 1099
            P SPF L++E L  DPWKLLI  I+LN+TS  +   VLWDFLE +P+A VA  A  + +A ++ PLGL + R  AII+FS E+L+K WK P EL  +GKY +D+++IF  + W+EV P DH LN   EW+   QE
Sbjct:  377 PRSPFKLVQETLFHDPWKLLIATILLNKTSGKKAIPVLWDFLERYPSAEVARVADWKEIAALLKPLGLYELRAKAIIKFSDEFLTKQWKYPIELHGIGKYGNDSYRIFCVKEWKEVQPRDHKLNKYWEWLWANQE 511          
BLAST of mRNA_P-fluviatile_contig13.1688.1 vs. uniprot
Match: A0A061RHZ0_9CHLO (Methyl-CpG-binding domain protein 4 n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RHZ0_9CHLO)

HSP 1 Score: 136 bits (343), Expect = 4.370e-33
Identity = 62/133 (46.62%), Postives = 89/133 (66.92%), Query Frame = 2
Query:  695 PASPFGLIEELLTDDPWKLLIGCIMLNQTSRSQTDRVLWDFLEHFPTAAVAASASVEGVARIVAPLGLQKRRPVAIIRFSQEYLSKPWKKPEELFWVGKYASDAHKIFIERRWQEVHPEDHALNWLVEWMRGT 1093
            P SP+GLI+E + DDPWK+++ CI+LN+TS +Q  RV+WD     PT   A +  +  + +++ PLGL ++R   I RFS++YL+K WK P EL  VGKYA+DA+ IF E  W++V P D  LN   EW++ T
Sbjct:  127 PQSPYGLIQEQVYDDPWKVMLCCILLNKTSITQVRRVIWDLFRMCPTPEAAIATDLAEIEQLILPLGLHRKRARDIKRFSEDYLTKDWKSPYELHSVGKYAADAYSIFCEGAWRDVEPCDKELNKYHEWLKAT 259          
BLAST of mRNA_P-fluviatile_contig13.1688.1 vs. uniprot
Match: D4A9W8_RAT (Methyl-CpG-binding domain protein 4 n=5 Tax=Tetrapoda TaxID=32523 RepID=D4A9W8_RAT)

HSP 1 Score: 141 bits (356), Expect = 8.710e-33
Identity = 66/135 (48.89%), Postives = 88/135 (65.19%), Query Frame = 2
Query:  695 PASPFGLIEELLTDDPWKLLIGCIMLNQTSRSQTDRVLWDFLEHFPTAAVAASASVEGVARIVAPLGLQKRRPVAIIRFSQEYLSKPWKKPEELFWVGKYASDAHKIFIERRWQEVHPEDHALNWLVEWMRGTQE 1099
            P SPF L++E L  DPWKLLI  I LN+TS      VLW+FLE +P+A VA +A    V+ ++ PLGL   R   II+FS EYL+KPW+ P EL  +GKY +D+++IF    W++VHPEDH LN   +W+    E
Sbjct:  410 PRSPFNLVQETLFHDPWKLLISTIFLNRTSGKMAIPVLWEFLEKYPSAEVARTADWRDVSELLKPLGLYDLRAKTIIKFSDEYLTKPWRYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHE 544          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1688.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLY6_9PHAE1.580e-15060.58Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z3C1_9STRA7.290e-3752.71DNA glycosylase (Fragment) n=1 Tax=Tribonema minus... [more]
E1Z2K4_CHLVA3.230e-3548.46ENDO3c domain-containing protein (Fragment) n=1 Ta... [more]
UPI001B35343A2.440e-3438.11methyl-CpG-binding domain protein 4 isoform X3 n=1... [more]
A0A516AGE4_LINPO5.980e-3435.84Methyl-CpG-binding domain protein 4 n=1 Tax=Lingul... [more]
A0A7R9TQ64_9VIRI7.920e-3449.28Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
A0A2P6VLS1_9CHLO1.210e-3341.58Methyl-binding domain 4 n=1 Tax=Micractinium condu... [more]
UPI0009A268CF2.340e-3350.37methyl-CpG-binding domain protein 4 isoform X1 n=2... [more]
A0A061RHZ0_9CHLO4.370e-3346.62Methyl-CpG-binding domain protein 4 n=1 Tax=Tetras... [more]
D4A9W8_RAT8.710e-3348.89Methyl-CpG-binding domain protein 4 n=5 Tax=Tetrap... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:747517..749769 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score443.0
Seed ortholog evalue1.3e-121
Seed eggNOG ortholog2880.D7FKJ0
Preferred nameMBD4
KEGG koko:K10801
KEGG Pathwayko03410,map03410
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000700,GO:0000785,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003696,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006304,GO:0006305,GO:0006306,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0007049,GO:0007093,GO:0007095,GO:0007154,GO:0007165,GO:0007346,GO:0008150,GO:0008152,GO:0008219,GO:0008263,GO:0008630,GO:0009056,GO:0009058,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009314,GO:0009394,GO:0009628,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0012501,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0018130,GO:0019104,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0022402,GO:0023052,GO:0031570,GO:0031572,GO:0031974,GO:0031981,GO:0032259,GO:0033554,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035556,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043565,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044728,GO:0044773,GO:0044774,GO:0044818,GO:0045008,GO:0045786,GO:0045930,GO:0046386,GO:0046434,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0051726,GO:0055086,GO:0065007,GO:0070013,GO:0071704,GO:0072527,GO:0072529,GO:0090304,GO:0090305,GO:0097159,GO:0097190,GO:0097193,GO:0140097,GO:1901135,GO:1901136,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903047,GO:1990837
EggNOG free text desc.domain protein
EggNOG OGsKOG4161@1,KOG4161@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036,ko03400
Hectar predicted targeting categoryother localisation
Exons4
Model size1526
Cds size1035
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1688.1prot_P-fluviatile_contig13.1688.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 747587..749348 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.979587-UTR-P-fluviatile_contig13:747516..7475861622815546.979587-UTR-P-fluviatile_contig13:747516..747586Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 747517..747586 +
1693562214.5981596-UTR-P-fluviatile_contig13:747516..7475861693562214.5981596-UTR-P-fluviatile_contig13:747516..747586Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 747517..747586 +
1622815547.039689-UTR-P-fluviatile_contig13:749348..7497691622815547.039689-UTR-P-fluviatile_contig13:749348..749769Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 749349..749769 +
1693562214.650747-UTR-P-fluviatile_contig13:749348..7497691693562214.650747-UTR-P-fluviatile_contig13:749348..749769Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 749349..749769 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.9926422-CDS-P-fluviatile_contig13:747586..7480001622815546.9926422-CDS-P-fluviatile_contig13:747586..748000Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 747587..748000 +
1693562214.6103065-CDS-P-fluviatile_contig13:747586..7480001693562214.6103065-CDS-P-fluviatile_contig13:747586..748000Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 747587..748000 +
1622815547.0045617-CDS-P-fluviatile_contig13:748239..7485441622815547.0045617-CDS-P-fluviatile_contig13:748239..748544Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 748240..748544 +
1693562214.6185396-CDS-P-fluviatile_contig13:748239..7485441693562214.6185396-CDS-P-fluviatile_contig13:748239..748544Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 748240..748544 +
1622815547.0183196-CDS-P-fluviatile_contig13:748685..7488311622815547.0183196-CDS-P-fluviatile_contig13:748685..748831Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 748686..748831 +
1693562214.626895-CDS-P-fluviatile_contig13:748685..7488311693562214.626895-CDS-P-fluviatile_contig13:748685..748831Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 748686..748831 +
1622815547.0291915-CDS-P-fluviatile_contig13:749178..7493481622815547.0291915-CDS-P-fluviatile_contig13:749178..749348Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 749179..749348 +
1693562214.6355689-CDS-P-fluviatile_contig13:749178..7493481693562214.6355689-CDS-P-fluviatile_contig13:749178..749348Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 749179..749348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1688.1

>prot_P-fluviatile_contig13.1688.1 ID=prot_P-fluviatile_contig13.1688.1|Name=mRNA_P-fluviatile_contig13.1688.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=345bp
MTMCKRALCKSSRSRHFTGAPITASEEGTSNNGRSEYFKSSPDSCAGSAS
SFDWGSAFTERAFRALKACEFFERSGVRHLCVSKCYFKAYEPFRRWHALR
LEVARAGSSTRVLDGWSIRMDGGEKAHHSWCIGYISPDGREYASAKLALG
ALGLGRAATLCPTSSPTLRRNRGSSSGSPQQALAAHNATRHYPDGPAYLL
KNPPAGAFPASPFGLIEELLTDDPWKLLIGCIMLNQTSRSQTDRVLWDFL
EHFPTAAVAASASVEGVARIVAPLGLQKRRPVAIIRFSQEYLSKPWKKPE
ELFWVGKYASDAHKIFIERRWQEVHPEDHALNWLVEWMRGTQEV*
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mRNA from alignment at P-fluviatile_contig13:747517..749769+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1688.1 ID=mRNA_P-fluviatile_contig13.1688.1|Name=mRNA_P-fluviatile_contig13.1688.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2253bp|location=Sequence derived from alignment at P-fluviatile_contig13:747517..749769+ (Porterinema fluviatile SAG_2381)
CAGTTTCTTTCGGCCATCGCGCCACACAGAGCGCCTGAACTCCTCTGCAG CTTTTGGAAGTTGTGTTCGCATGACGATGTGTAAACGGGCGCTATGCAAA AGCTCGAGAAGCAGACACTTTACGGGTGCACCTATAACCGCTTCGGAAGA GGGCACATCGAACAATGGGCGAAGTGAATATTTTAAATCATCCCCTGATT CATGCGCCGGTAGCGCGAGTAGCTTTGACTGGGGCTCTGCTTTCACGGAG CGGGCGTTCCGAGCCCTGAAAGCCTGTGAGTTCTTCGAGCGGTCTGGGGT TCGGCATCTCTGCGTATCGAAATGCTACTTCAAAGCCTACGAGCCCTTCC GGCGCTGGCATGCGCTTCGCTTGGAGGTAGCACGGGCTGGATCGTCGACA CGGGTCCTGGATGGGTGGTCGATTCGAATGGACGGAGGAGAGAAAGCTCA TCACTCTTGGTGCATCGGATATATTTCGCCGGACGTGAGTCGCTTCACTC ATGATGCCAGTGGAGTACTGGAGCTTGTGCTGCATTTCATTTTCGGGTCA GTTTGTTTGAAATCTCGCCTCTAGGTGGAGCGCGCAGATCTGTTGCACAT CGCACACAAGCCTCAAGATCGACGCATGACGCGGTTAGTTCCCCTTGCTG ATCGTTTCCATTAGCGCGTCACACGCTCTCAATATTTGAACAGAAGCTTC TCTTTGCCCTCTGTGTGCGTCAGGGAAGGGAATATGCTTCGGCCAAGTTG GCGCTTGGGGCCTTGGGCTTAGGACGGGCCGCGACCTTGTGTCCGACGTC GTCCCCGACCTTGCGACGAAACAGGGGAAGTTCATCAGGTTCACCGCAGC AGGCACTCGCTGCACATAACGCGACTAGGCACTATCCAGATGGACCTGCG TATCTGCTCAAGAACCCACCAGCTGGAGCATTTCCTGCCTCTCCATTCGG GCTCATAGAAGAGCTGCTCACGGACGATCCCTGGAAGCTGCTTATCGGGT GTATAATGCTGAACCAAACTAGCAGATCGCAGGTGACTTTGCAATGTCAA CACGGCTTACTTCCGGGCGAAAAGCGATGGAGTTGACAATGAGCCGCCTG CTGGATAGTGTGTATGCTGACCCGTACCCGCTCTTTGCATCACTTCGATT TCCCCCCCCCATTTCCGAGGCAGACGGACAGAGTGCTTTGGGATTTCCTC GAGCATTTTCCGACAGCCGCTGTAGCGGCGTCAGCCAGCGTCGAGGGAGT TGCCCGGATTGTGGCCCCTCTAGGACTTCAGAAAAGGAGGCCCGTCGCAA TCATACGTTTTTCACGTGAGAAATGTTTCGAACAAATTGAAGCTTGAAAG CCGCTGTCTGCCTGACTTTCAGCTTTCGGTCCATGTATTGTAGCATCCCG CAGCGGCACCCCTCTAACAGCTTAAGCCGTGCGAAAAAAAGTGCTCGTGT TCTTCACATGATTCGAAGCGTAATCCCAATGCATTCTCCTGTTGCGTCCG CGCCAAAGCCACGTGATATCTGAAACGAGCGGGATTGGGGGTGCCAGCTC CAGTCTCGCAACCTAGCAGTACCTGTGATCGATGGAGCGAGATTCCGGTG TCGACTCTCACGAGAGCAACCTCATTTTTTTTGTCCCGCGTATTCGTCCG CACGCCCTCTAGAGGAATACCTGTCCAAGCCCTGGAAAAAACCAGAGGAG CTGTTCTGGGTGGGAAAGTATGCCTCTGATGCCCACAAGATTTTTATCGA ACGAAGGTGGCAAGAAGTACACCCCGAAGACCATGCACTCAACTGGTTGG TGGAATGGATGCGCGGCACTCAGGAAGTTTAGAGAGCCCATCGTACATCT CAGCCCACAGTTCCTTTGCTTGAGGAGCTTAAGTTGGACTTCACCTCGAG AAGCGACGCTGTGGACTGCAGCGTGGAACTTAGCGAAGGTAGAAGTGGAC GGATTCAGGATCACGCTCGCGGGCGACATGCCGGCGAAAATGTTTTGACA AAAATGACTGCTCCGAGTGTTCAAGCTGTCTGAGATTCCTACGGCTTCCG GTGTATTCGCTGTCTGTTAAACCCGAATGCGTCCGTCGTGGATGAAGTTT ACCAAGAAAGGAGCAAGCATGTATAGCGGAGGTCATTGGAAGTTCATCGA CATCTCAAGGACGCTTCCGTGTGGCACAGTGTGCTTCTACTGTTGCCGTT GGATCATCTACGACCGCACTTGAAATTCGACAGTTCAAGCGAAGAAAGGT CCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:747517..749769+

>mRNA_P-fluviatile_contig13.1688.1 ID=mRNA_P-fluviatile_contig13.1688.1|Name=mRNA_P-fluviatile_contig13.1688.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2070bp|location=Sequence derived from alignment at P-fluviatile_contig13:747517..749769+ (Porterinema fluviatile SAG_2381)
ATGACGATGTGTAAACGGGCGCTATGCAAAAGCTCGAGAAGCAGACACTT
TACGGGTGCACCTATAACCGCTTCGGAAGAGGGCACATCGAACAATGGGC
GAAGTGAATATTTTAAATCATCCCCTGATTCATGCGCCGGTAGCGCGAGT
AGCTTTGACTGGGGCTCTGCTTTCACGGAGCGGGCGTTCCGAGCCCTGAA
AGCCTGTGAGTTCTTCGAGCGGTCTGGGGTTCGGCATCTCTGCGTATCGA
AATGCTACTTCAAAGCCTACGAGCCCTTCCGGCGCTGGCATGCGCTTCGC
TTGGAGGTAGCACGGGCTGGATCGTCGACACGGGTCCTGGATGGGTGGTC
GATTCGAATGGACGGAGGAGAGAAAGCTCATCACTCTTGGTGCATCGGAT
ATATTTCGCCGGACATGACGATGTGTAAACGGGCGCTATGCAAAAGCTCG
AGAAGCAGACACTTTACGGGTGCACCTATAACCGCTTCGGAAGAGGGCAC
ATCGAACAATGGGCGAAGTGAATATTTTAAATCATCCCCTGATTCATGCG
CCGGTAGCGCGAGTAGCTTTGACTGGGGCTCTGCTTTCACGGAGCGGGCG
TTCCGAGCCCTGAAAGCCTGTGAGTTCTTCGAGCGGTCTGGGGTTCGGCA
TCTCTGCGTATCGAAATGCTACTTCAAAGCCTACGAGCCCTTCCGGCGCT
GGCATGCGCTTCGCTTGGAGGTAGCACGGGCTGGATCGTCGACACGGGTC
CTGGATGGGTGGTCGATTCGAATGGACGGAGGAGAGAAAGCTCATCACTC
TTGGTGCATCGGATATATTTCGCCGGACGGAAGGGAATATGCTTCGGCCA
AGTTGGCGCTTGGGGCCTTGGGCTTAGGACGGGCCGCGACCTTGTGTCCG
ACGTCGTCCCCGACCTTGCGACGAAACAGGGGAAGTTCATCAGGTTCACC
GCAGCAGGCACTCGCTGCACATAACGCGACTAGGCACTATCCAGATGGAC
CTGCGTATCTGCTCAAGAACCCACCAGCTGGAGCATTTCCTGCCTCTCCA
TTCGGGCTCATAGAAGAGCTGCTCACGGACGATCCCTGGAAGCTGCTTAT
CGGGTGTATAATGCTGAACCAAACTAGCAGATCGGAAGGGAATATGCTTC
GGCCAAGTTGGCGCTTGGGGCCTTGGGCTTAGGACGGGCCGCGACCTTGT
GTCCGACGTCGTCCCCGACCTTGCGACGAAACAGGGGAAGTTCATCAGGT
TCACCGCAGCAGGCACTCGCTGCACATAACGCGACTAGGCACTATCCAGA
TGGACCTGCGTATCTGCTCAAGAACCCACCAGCTGGAGCATTTCCTGCCT
CTCCATTCGGGCTCATAGAAGAGCTGCTCACGGACGATCCCTGGAAGCTG
CTTATCGGGTGTATAATGCTGAACCAAACTAGCAGATCGCAGACGGACAG
AGTGCTTTGGGATTTCCTCGAGCATTTTCCGACAGCCGCTGTAGCGGCGT
CAGCCAGCGTCGAGGGAGTTGCCCGGATTGTGGCCCCTCTAGGACTTCAG
AAAAGGAGGCCCGTCGCAATCATACGTTTTTCACGCAGACGGACAGAGTG
CTTTGGGATTTCCTCGAGCATTTTCCGACAGCCGCTGTAGCGGCGTCAGC
CAGCGTCGAGGGAGTTGCCCGGATTGTGGCCCCTCTAGGACTTCAGAAAA
GGAGGCCCGTCGCAATCATACGTTTTTCACAGGAATACCTGTCCAAGCCC
TGGAAAAAACCAGAGGAGCTGTTCTGGGTGGGAAAGTATGCCTCTGATGC
CCACAAGATTTTTATCGAACGAAGGTGGCAAGAAGTACACCCCGAAGACC
ATGCACTCAACTGGTTGGTGGAATGGATGCGCGGCACTCAGGAAGTTTAG
AGGAATACCTGTCCAAGCCCTGGAAAAAACCAGAGGAGCTGTTCTGGGTG
GGAAAGTATGCCTCTGATGCCCACAAGATTTTTATCGAACGAAGGTGGCA
AGAAGTACACCCCGAAGACCATGCACTCAACTGGTTGGTGGAATGGATGC
GCGGCACTCAGGAAGTTTAG
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