mRNA_P-fluviatile_contig13.1952.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1952.1
Unique NamemRNA_P-fluviatile_contig13.1952.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3074107..3075025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size919
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1952.1prot_P-fluviatile_contig13.1952.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3074312..3074992 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.0354836-UTR-P-fluviatile_contig13:3074106..30743111622815538.0354836-UTR-P-fluviatile_contig13:3074106..3074311Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3074107..3074311 +
1693562174.1332235-UTR-P-fluviatile_contig13:3074106..30743111693562174.1332235-UTR-P-fluviatile_contig13:3074106..3074311Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3074107..3074311 +
1622815538.0801656-UTR-P-fluviatile_contig13:3074992..30750251622815538.0801656-UTR-P-fluviatile_contig13:3074992..3075025Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3074993..3075025 +
1693562174.1476707-UTR-P-fluviatile_contig13:3074992..30750251693562174.1476707-UTR-P-fluviatile_contig13:3074992..3075025Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 3074993..3075025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.0476148-CDS-P-fluviatile_contig13:3074311..30749921622815538.0476148-CDS-P-fluviatile_contig13:3074311..3074992Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3074312..3074992 +
1693562174.140485-CDS-P-fluviatile_contig13:3074311..30749921693562174.140485-CDS-P-fluviatile_contig13:3074311..3074992Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3074312..3074992 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1952.1

>prot_P-fluviatile_contig13.1952.1 ID=prot_P-fluviatile_contig13.1952.1|Name=mRNA_P-fluviatile_contig13.1952.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=227bp
MILKEADYARNSSSRMKRSLVATTLSSTFSSLSKAGGYEMKTGAQRAKTS
TNTIRLKTIDFDSALPFFSRLLRRQPRRLQERGTGNNKLFTYVTAVRPLL
RVGTPSCLTSRQSCCRSYMWQGRIRFFASAPLPLPRHPAGLESARMRTVT
GDILPTSDPPRPTPAPPINSKRSKKTKALDASMSTRTKTADQESLPPPHR
TAAATAAAVAAETRRIGANNQLTYNK*
back to top

mRNA from alignment at P-fluviatile_contig13:3074107..3075025+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1952.1 ID=mRNA_P-fluviatile_contig13.1952.1|Name=mRNA_P-fluviatile_contig13.1952.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=919bp|location=Sequence derived from alignment at P-fluviatile_contig13:3074107..3075025+ (Porterinema fluviatile SAG_2381)
GCATCCTCGCGCTAGGGAGGGCGGGGGGGCACGGACGCAAGTCGCCACTA
CCATAGGCTTATCCCCATTCTGCTACATATTTCATTTAATGCTACTTTCG
AAAAAAATGGCATTTTTCTGTGTGCTTTTCCTAAATGGCCCAATCACATT
CTCAGAATGCTTCTAAAATGGCGAATTACGCTCGTTTCGGTCATTGCTGT
AAATCATGATCCTGAAAGAGGCCGATTATGCTAGAAATTCTTCGAGTAGA
ATGAAGAGAAGCCTAGTCGCCACAACATTATCGTCAACATTCAGTTCTCT
GAGCAAGGCAGGCGGATATGAGATGAAAACAGGGGCACAAAGAGCGAAAA
CAAGCACAAACACAATAAGACTGAAAACCATAGATTTTGATTCCGCCCTC
CCGTTTTTTTCGAGACTGCTACGACGACAGCCACGAAGATTACAGGAGCG
GGGTACAGGGAACAACAAACTCTTTACTTACGTTACTGCGGTTCGACCCT
TATTACGTGTTGGCACGCCTTCCTGTCTGACCTCGCGGCAGAGCTGCTGC
CGCAGTTACATGTGGCAAGGCAGAATACGCTTCTTTGCTTCCGCCCCCTT
GCCCCTCCCCCGTCACCCCGCAGGCTTAGAGTCGGCGCGAATGCGCACGG
TCACCGGTGACATTCTTCCAACTTCTGACCCGCCCCGGCCTACCCCCGCA
CCACCAATAAACTCGAAAAGAAGCAAGAAAACGAAAGCGCTAGATGCGTC
GATGTCAACTCGAACAAAAACGGCAGACCAGGAATCATTACCGCCCCCGC
ATCGCACCGCCGCCGCTACTGCCGCCGCCGTTGCCGCAGAAACGCGTCGT
ATCGGCGCAAACAACCAACTGACTTACAACAAATAGTCCCCAGAAACGAC
GCTGGCGAGCGATCCGAGC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig13:3074107..3075025+

>mRNA_P-fluviatile_contig13.1952.1 ID=mRNA_P-fluviatile_contig13.1952.1|Name=mRNA_P-fluviatile_contig13.1952.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1362bp|location=Sequence derived from alignment at P-fluviatile_contig13:3074107..3075025+ (Porterinema fluviatile SAG_2381)
ATGATCCTGAAAGAGGCCGATTATGCTAGAAATTCTTCGAGTAGAATGAA
GAGAAGCCTAGTCGCCACAACATTATCGTCAACATTCAGTTCTCTGAGCA
AGGCAGGCGGATATGAGATGAAAACAGGGGCACAAAGAGCGAAAACAAGC
ACAAACACAATAAGACTGAAAACCATAGATTTTGATTCCGCCCTCCCGTT
TTTTTCGAGACTGCTACGACGACAGCCACGAAGATTACAGGAGCGGGGTA
CAGGGAACAACAAACTCTTTACTTACGTTACTGCGGTTCGACCCTTATTA
CGTGTTGGCACGCCTTCCTGTCTGACCTCGCGGCAGAGCTGCTGCCGCAG
TTACATGTGGCAAGGCAGAATACGCTTCTTTGCTTCCGCCCCCTTGCCCC
TCCCCCGTCACCCCGCAGGCTTAGAGTCGGCGCGAATGCGCACGGTCACC
GGTGACATTCTTCCAACTTCTGACCCGCCCCGGCCTACCCCCGCACCACC
AATAAACTCGAAAAGAAGCAAGAAAACGAAAGCGCTAGATGCGTCGATGT
CAACTCGAACAAAAACGGCAGACCAGGAATCATTACCGCCCCCGCATCGC
ACCGCCGCCGCTACTGCCGCCGCCGTTGCCGCAGAAACGCGTCGTATCGG
CGCAAACAACCAACTGACTTACAACAAATAGATGATCCTGAAAGAGGCCG
ATTATGCTAGAAATTCTTCGAGTAGAATGAAGAGAAGCCTAGTCGCCACA
ACATTATCGTCAACATTCAGTTCTCTGAGCAAGGCAGGCGGATATGAGAT
GAAAACAGGGGCACAAAGAGCGAAAACAAGCACAAACACAATAAGACTGA
AAACCATAGATTTTGATTCCGCCCTCCCGTTTTTTTCGAGACTGCTACGA
CGACAGCCACGAAGATTACAGGAGCGGGGTACAGGGAACAACAAACTCTT
TACTTACGTTACTGCGGTTCGACCCTTATTACGTGTTGGCACGCCTTCCT
GTCTGACCTCGCGGCAGAGCTGCTGCCGCAGTTACATGTGGCAAGGCAGA
ATACGCTTCTTTGCTTCCGCCCCCTTGCCCCTCCCCCGTCACCCCGCAGG
CTTAGAGTCGGCGCGAATGCGCACGGTCACCGGTGACATTCTTCCAACTT
CTGACCCGCCCCGGCCTACCCCCGCACCACCAATAAACTCGAAAAGAAGC
AAGAAAACGAAAGCGCTAGATGCGTCGATGTCAACTCGAACAAAAACGGC
AGACCAGGAATCATTACCGCCCCCGCATCGCACCGCCGCCGCTACTGCCG
CCGCCGTTGCCGCAGAAACGCGTCGTATCGGCGCAAACAACCAACTGACT
TACAACAAATAG
back to top