mRNA_P-fluviatile_contig13.1778.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1778.1
Unique NamemRNA_P-fluviatile_contig13.1778.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1569847..1570220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size376
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.4448013-UTR-P-fluviatile_contig13:1569846..15699021622815537.4448013-UTR-P-fluviatile_contig13:1569846..1569902Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1569847..1569902 +
1693562173.9204123-UTR-P-fluviatile_contig13:1569846..15699021693562173.9204123-UTR-P-fluviatile_contig13:1569846..1569902Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1569847..1569902 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.457253-CDS-P-fluviatile_contig13:1569902..15702201622815537.457253-CDS-P-fluviatile_contig13:1569902..1570220Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1569903..1570220 +
1693562173.932648-CDS-P-fluviatile_contig13:1569902..15702201693562173.932648-CDS-P-fluviatile_contig13:1569902..1570220Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1569903..1570220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1778.1prot_P-fluviatile_contig13.1778.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1569903..1570220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1778.1

>prot_P-fluviatile_contig13.1778.1 ID=prot_P-fluviatile_contig13.1778.1|Name=mRNA_P-fluviatile_contig13.1778.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=106bp
MNVFLPDLSTHRAVNLEPRRLRSIYIVLLLVTFLTPLLFATEVGRAHHNT
KEVNRKQPSRIRHHRAKFASRHDPTQRTPQSPHRLRPTLKTLADNRKDWR
SLRKRE
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mRNA from alignment at P-fluviatile_contig13:1569847..1570220+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1778.1 ID=mRNA_P-fluviatile_contig13.1778.1|Name=mRNA_P-fluviatile_contig13.1778.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=374bp|location=Sequence derived from alignment at P-fluviatile_contig13:1569847..1570220+ (Porterinema fluviatile SAG_2381)
TCCAGTACTTTTTTTGCCTGCCATGTGGAAAATTAAATCTTCTTGAGCGT
AAATGAATGAACGTCTTTCTTCCCGACTTGTCGACCCATCGAGCGGTGAA
TCTTGAACCGCGTAGACTGAGGTCAATATATATCGTGTTGTTACTGGTCA
CGTTTCTTACTCCTCTCTTGTTTGCAACGGAAGTCGGCCGAGCCCACCAT
AACACGAAGGAGGTAAACAGAAAACAACCGAGCAGAATAAGACACCACCG
AGCAAAATTCGCAAGTCGACACGATCCGACGCAACGCACACCACAAAGCC
CGCACCGACTCCGACCCACGCTTAAAACACTCGCCGACAACAGGAAGGAT
TGGCGAAGCTTAAGAAAAAGGGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:1569847..1570220+

>mRNA_P-fluviatile_contig13.1778.1 ID=mRNA_P-fluviatile_contig13.1778.1|Name=mRNA_P-fluviatile_contig13.1778.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=636bp|location=Sequence derived from alignment at P-fluviatile_contig13:1569847..1570220+ (Porterinema fluviatile SAG_2381)
ATGAACGTCTTTCTTCCCGACTTGTCGACCCATCGAGCGGTGAATCTTGA
ACCGCGTAGACTGAGGTCAATATATATCGTGTTGTTACTGGTCACGTTTC
TTACTCCTCTCTTGTTTGCAACGGAAGTCGGCCGAGCCCACCATAACACG
AAGGAGGTAAACAGAAAACAACCGAGCAGAATAAGACACCACCGAGCAAA
ATTCGCAAGTCGACACGATCCGACGCAACGCACACCACAAAGCCCGCACC
GACTCCGACCCACGCTTAAAACACTCGCCGACAACAGGAAGGATTGGCGA
AGCTTAAGAAAAAGGGAGATGAACGTCTTTCTTCCCGACTTGTCGACCCA
TCGAGCGGTGAATCTTGAACCGCGTAGACTGAGGTCAATATATATCGTGT
TGTTACTGGTCACGTTTCTTACTCCTCTCTTGTTTGCAACGGAAGTCGGC
CGAGCCCACCATAACACGAAGGAGGTAAACAGAAAACAACCGAGCAGAAT
AAGACACCACCGAGCAAAATTCGCAAGTCGACACGATCCGACGCAACGCA
CACCACAAAGCCCGCACCGACTCCGACCCACGCTTAAAACACTCGCCGAC
AACAGGAAGGATTGGCGAAGCTTAAGAAAAAGGGAG
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