mRNA_P-fluviatile_contig13.1720.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1720.1
Unique NamemRNA_P-fluviatile_contig13.1720.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:1009783..1010332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size550
Cds size324
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1720.1prot_P-fluviatile_contig13.1720.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 1009958..1010281 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.2019925-UTR-P-fluviatile_contig13:1009782..10099571622815537.2019925-UTR-P-fluviatile_contig13:1009782..1009957Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1009783..1009957 +
1693562173.7997727-UTR-P-fluviatile_contig13:1009782..10099571693562173.7997727-UTR-P-fluviatile_contig13:1009782..1009957Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1009783..1009957 +
1622815537.238764-UTR-P-fluviatile_contig13:1010281..10103321622815537.238764-UTR-P-fluviatile_contig13:1010281..1010332Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1010282..1010332 +
1693562173.8159983-UTR-P-fluviatile_contig13:1010281..10103321693562173.8159983-UTR-P-fluviatile_contig13:1010281..1010332Porterinema fluviatile SAG_2381UTRP-fluviatile_contig13 1010282..1010332 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815537.2190936-CDS-P-fluviatile_contig13:1009957..10102811622815537.2190936-CDS-P-fluviatile_contig13:1009957..1010281Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1009958..1010281 +
1693562173.8079195-CDS-P-fluviatile_contig13:1009957..10102811693562173.8079195-CDS-P-fluviatile_contig13:1009957..1010281Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 1009958..1010281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1720.1

>prot_P-fluviatile_contig13.1720.1 ID=prot_P-fluviatile_contig13.1720.1|Name=mRNA_P-fluviatile_contig13.1720.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
MSTPGILWCCAAGNHCTLGMMDDPNGSYHLIAERFRSLAKECRRQDGSDS
NERRDRREGQYSGRSPRQKRGRVQENVLGDGVRRQRREAASPSHRLAAYN
EQAAVVE*
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mRNA from alignment at P-fluviatile_contig13:1009783..1010332+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1720.1 ID=mRNA_P-fluviatile_contig13.1720.1|Name=mRNA_P-fluviatile_contig13.1720.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=550bp|location=Sequence derived from alignment at P-fluviatile_contig13:1009783..1010332+ (Porterinema fluviatile SAG_2381)
CGCCGTACTCCGGAGCTTGCATGGGGCTCCCGACCGGGCTTGTCCCACTT
TCGTACGAGCGCTGCCCAGTGGTGCTGTGAACCCTGCAGAGCACACGCAG
TCAGAAGCGGGGGAGGGATGGTCTAAAAGCGATAATTGTTCCAGGGCCAT
ATGTTCAGCTAAGTCGTCGCCGCTTATGTCTACACCGGGTATCCTCTGGT
GCTGTGCGGCGGGCAATCATTGCACTTTGGGGATGATGGATGATCCAAAC
GGTTCGTACCATCTGATAGCAGAGCGGTTCAGGAGCCTCGCCAAAGAATG
TCGCCGACAAGATGGCTCAGATTCGAACGAGAGGCGAGATCGTCGCGAAG
GACAGTACTCGGGACGCTCACCACGGCAAAAAAGGGGCCGGGTACAAGAA
AATGTGCTCGGTGATGGTGTACGGCGTCAGAGGAGAGAAGCAGCAAGCCC
ATCACACAGACTAGCGGCTTACAACGAACAAGCTGCAGTAGTGGAATAGC
AAACGGAGCAAAGATAGCGCGCGGAGAGCAGTATCATGGTCTACTGCAGT
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:1009783..1010332+

>mRNA_P-fluviatile_contig13.1720.1 ID=mRNA_P-fluviatile_contig13.1720.1|Name=mRNA_P-fluviatile_contig13.1720.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig13:1009783..1010332+ (Porterinema fluviatile SAG_2381)
ATGTCTACACCGGGTATCCTCTGGTGCTGTGCGGCGGGCAATCATTGCAC
TTTGGGGATGATGGATGATCCAAACGGTTCGTACCATCTGATAGCAGAGC
GGTTCAGGAGCCTCGCCAAAGAATGTCGCCGACAAGATGGCTCAGATTCG
AACGAGAGGCGAGATCGTCGCGAAGGACAGTACTCGGGACGCTCACCACG
GCAAAAAAGGGGCCGGGTACAAGAAAATGTGCTCGGTGATGGTGTACGGC
GTCAGAGGAGAGAAGCAGCAAGCCCATCACACAGACTAGCGGCTTACAAC
GAACAAGCTGCAGTAGTGGAATAGATGTCTACACCGGGTATCCTCTGGTG
CTGTGCGGCGGGCAATCATTGCACTTTGGGGATGATGGATGATCCAAACG
GTTCGTACCATCTGATAGCAGAGCGGTTCAGGAGCCTCGCCAAAGAATGT
CGCCGACAAGATGGCTCAGATTCGAACGAGAGGCGAGATCGTCGCGAAGG
ACAGTACTCGGGACGCTCACCACGGCAAAAAAGGGGCCGGGTACAAGAAA
ATGTGCTCGGTGATGGTGTACGGCGTCAGAGGAGAGAAGCAGCAAGCCCA
TCACACAGACTAGCGGCTTACAACGAACAAGCTGCAGTAGTGGAATAG
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