mRNA_P-fluviatile_contig13.1980.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig13.1980.1
Unique NamemRNA_P-fluviatile_contig13.1980.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig13.1980.1 vs. uniprot
Match: A0A6H5JAT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT0_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 1.070e-6
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   82 GEDGRMHFYAAARAPDKATCEYHLKKIEE 168
            G  GRMHFY AARAPDKATCE+HL KI++
Sbjct:  308 GPGGRMHFYQAARAPDKATCEFHLNKIKD 336
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig13.1980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JAT0_9PHAE1.070e-675.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig13contigP-fluviatile_contig13:3360940..3361435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size171
Cds size168
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815536.6174417-CDS-P-fluviatile_contig13:3360941..33610221622815536.6174417-CDS-P-fluviatile_contig13:3360941..3361022Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3360942..3361022 -
1693562172.6643584-CDS-P-fluviatile_contig13:3360941..33610221693562172.6643584-CDS-P-fluviatile_contig13:3360941..3361022Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3360942..3361022 -
1622815536.6300728-CDS-P-fluviatile_contig13:3361348..33614351622815536.6300728-CDS-P-fluviatile_contig13:3361348..3361435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3361349..3361435 -
1693562172.6825576-CDS-P-fluviatile_contig13:3361348..33614351693562172.6825576-CDS-P-fluviatile_contig13:3361348..3361435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig13 3361349..3361435 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig13.1980.1prot_P-fluviatile_contig13.1980.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig13 3360942..3361435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig13.1980.1

>prot_P-fluviatile_contig13.1980.1 ID=prot_P-fluviatile_contig13.1980.1|Name=mRNA_P-fluviatile_contig13.1980.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=56bp
GPTGDAGPGGTPSVRGAYAEEPRGCWTGEDGRMHFYAAARAPDKATCEYH
LKKIEE
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mRNA from alignment at P-fluviatile_contig13:3360940..3361435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig13.1980.1 ID=mRNA_P-fluviatile_contig13.1980.1|Name=mRNA_P-fluviatile_contig13.1980.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=496bp|location=Sequence derived from alignment at P-fluviatile_contig13:3360940..3361435- (Porterinema fluviatile SAG_2381)
GGCCCTACCGGAGACGCTGGGCCAGGCGGAACGCCTTCGGTGCGGGGAGC
ATATGCTGAAGAACCACGGGGCTGTTGGACCGGTGAGGTGAAGAAGGGTC
GTGTGGTGCTTAGATGTTTGCCTGACTTGCAGTTGGTACCAAGGGATGCG
ATCCATGGCCAGCTCGTACATGAAGTAAAGTTTCCTCCGCGTCTTGGACA
CGTCTCGTGTGTTGAGGGTGAACTGGTGAACGTGTTAAGCGGCGGTGTGT
AATGCCTGTTTGACGCGGGGTGTGCCGTGTAGTTCCTCTCCATTGCATTG
CCTTGTTGTACCACCCTTCGTAGAGGGCCAACTGCACCGTCACGACGAAA
TGTACGCTGTACGTATCTCACTCTTCCCATGCCGCTACCCGCCGGCGTTT
TTTGTGTGCGTAGGACGGGCGTATGCACTTCTACGCGGCGGCGAGGGCGC
CGGACAAGGCCACCTGCGAGTACCACCTCAAGAAGATCGAGGAGCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig13:3360940..3361435-

>mRNA_P-fluviatile_contig13.1980.1 ID=mRNA_P-fluviatile_contig13.1980.1|Name=mRNA_P-fluviatile_contig13.1980.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=336bp|location=Sequence derived from alignment at P-fluviatile_contig13:3360940..3361435- (Porterinema fluviatile SAG_2381)
GGCCCTACCGGAGACGCTGGGCCAGGCGGAACGCCTTCGGTGCGGGGAGC
ATATGCTGAAGAACCACGGGGCTGTTGGACCGGTGAGGGCCCTACCGGAG
ACGCTGGGCCAGGCGGAACGCCTTCGGTGCGGGGAGCATATGCTGAAGAA
CCACGGGGCTGTTGGACCGGTGAGGACGGGCGTATGCACTTCTACGCGGC
GGCGAGGGCGCCGGACAAGGCCACCTGCGAGTACCACCTCAAGAAGATCG
AGGAGGACGGGCGTATGCACTTCTACGCGGCGGCGAGGGCGCCGGACAAG
GCCACCTGCGAGTACCACCTCAAGAAGATCGAGGAG
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