mRNA_P-fluviatile_contig96.15500.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig96.15500.1
Unique NamemRNA_P-fluviatile_contig96.15500.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig96.15500.1 vs. uniprot
Match: A0A6H5KUM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUM2_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 2.260e-14
Identity = 63/124 (50.81%), Postives = 77/124 (62.10%), Query Frame = 1 
Query:  109 ISDHNDGGGVPSGSAQGDEQQSAE-MASLRADVGSLTGQVSQLTALVTGLLD-SRQEEPAGTEESAADRSNAMESAEAGPANSEEGASSQVGTTQGETDLREPDREPGPSGRHSGEAAVLNPLE 474
            +S   DGG   S SA  D ++S E + +LR  V SLT Q+SQL +LV   +  S++EEPAGT E AADR +A ESA A   N+E GA   +G+ Q    LREP RE GPSGRHSGEA    P E
Sbjct:    1 MSGRKDGGDSSSDSAAQDRKRSREELVALRTQVSSLTDQMSQLMSLVEDTMKASKKEEPAGTMEGAADRGDARESAAAESTNAEGGAP-WIGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQE 123
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BLAST of mRNA_P-fluviatile_contig96.15500.1 vs. uniprot
Match: A0A6H5KNY4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY4_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 3.510e-14
Identity = 63/124 (50.81%), Postives = 76/124 (61.29%), Query Frame = 1 
Query:  109 ISDHNDGGGVPSGSAQGDEQQSAE-MASLRADVGSLTGQVSQLTALVTGLLD-SRQEEPAGTEESAADRSNAMESAEAGPANSEEGASSQVGTTQGETDLREPDREPGPSGRHSGEAAVLNPLE 474
            +S   DGG   S SA  D ++S E + +LR  V SLT Q+SQL +LV   +  S++EEPAGT E AADR +A ESA A   N+E GA    G+ Q    LREP RE GPSGRHSGEA    P E
Sbjct:    1 MSGRKDGGDSSSDSAAEDRKRSREELVALRTQVSSLTDQMSQLMSLVEDTMKASKREEPAGTMEGAADRGDARESAAAESTNAEGGAP-WTGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQE 123
[Close]
BLAST of mRNA_P-fluviatile_contig96.15500.1 vs. uniprot
Match: A0A6H5KG88_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG88_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.000e-13
Identity = 62/124 (50.00%), Postives = 76/124 (61.29%), Query Frame = 1 
Query:  109 ISDHNDGGGVPSGSAQGDEQQSAE-MASLRADVGSLTGQVSQLTALVTGLLD-SRQEEPAGTEESAADRSNAMESAEAGPANSEEGASSQVGTTQGETDLREPDREPGPSGRHSGEAAVLNPLE 474
            +S  NDGG   + SA  D ++S E + +LR  V SLT Q+SQL +LV    + S++EEPAGT E AADR +A ESA     N+E GA    G+ Q    LREP RE GPSGRHSGEA    P E
Sbjct:    1 MSGRNDGGDSSNDSAAEDRKRSREELVALRTQVSSLTDQMSQLMSLVEDTTEASKKEEPAGTMEGAADRGDARESAAVESTNAEGGAP-WTGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQE 123
[Close]
BLAST of mRNA_P-fluviatile_contig96.15500.1 vs. uniprot
Match: A0A6H5LCX0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCX0_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.910e-13
Identity = 61/124 (49.19%), Postives = 76/124 (61.29%), Query Frame = 1 
Query:  109 ISDHNDGGGVPSGSAQGDEQQSAE-MASLRADVGSLTGQVSQLTALVTGLLD-SRQEEPAGTEESAADRSNAMESAEAGPANSEEGASSQVGTTQGETDLREPDREPGPSGRHSGEAAVLNPLE 474
            +S  ++GG   S SA  D ++S E + +L   VGSLT Q+SQL +LV   +  S++EEPAGT E AADR +A ESA     N+E GA    G+ Q    LREP RE GPSGRHSGEA    P E
Sbjct:    1 MSGRSNGGDSSSDSAAEDRKRSREELVALTTQVGSLTDQMSQLMSLVEDTMKASKKEEPAGTMEGAADRGDARESAAPESTNAEGGAP-WTGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQE 123
[Close]
BLAST of mRNA_P-fluviatile_contig96.15500.1 vs. uniprot
Match: A0A6H5JZU0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 4.080e-13
Identity = 62/124 (50.00%), Postives = 75/124 (60.48%), Query Frame = 1 
Query:  109 ISDHNDGGGVPSGSAQGDEQQSAE-MASLRADVGSLTGQVSQLTALVTGLLD-SRQEEPAGTEESAADRSNAMESAEAGPANSEEGASSQVGTTQGETDLREPDREPGPSGRHSGEAAVLNPLE 474
            +S   DGG   S SA  D + S E + +LR  V  LT Q+SQL +LV  ++  S++EEPAGT E AADR +A ESA A   N+E GA    G+ Q    LREP RE GPSGRHSGEA    P E
Sbjct:    1 MSGRKDGGDSSSDSAAEDRKGSREELVALRTQVSLLTDQMSQLMSLVEDIMKASKKEEPAGTMEGAADRGDARESAAAESTNAEGGAP-WTGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQE 123
[Close]
BLAST of mRNA_P-fluviatile_contig96.15500.1 vs. uniprot
Match: A0A6H5K0G8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0G8_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.390e-13
Identity = 62/124 (50.00%), Postives = 75/124 (60.48%), Query Frame = 1 
Query:  109 ISDHNDGGGVPSGSAQGDEQQSAE-MASLRADVGSLTGQVSQLTALVTGLLD-SRQEEPAGTEESAADRSNAMESAEAGPANSEEGASSQVGTTQGETDLREPDREPGPSGRHSGEAAVLNPLE 474
            +S   DGG   S SA  D ++S E + +LR  V SLT Q+SQL +LV   +  S++E PAGT E AADR +A ESA A   N+E GA    G+ Q    LREP RE GPSGRHSGEA    P E
Sbjct:    1 MSGRKDGGDSSSDSAAEDRKRSREELVALRTQVSSLTDQMSQLMSLVEDTMKASKKEGPAGTMEGAADRGDARESAAAESTNAEGGAP-WTGSAQDGRYLREPVRESGPSGRHSGEAGGFVPQE 123
[Close]
BLAST of mRNA_P-fluviatile_contig96.15500.1 vs. uniprot
Match: A0A6H5K761_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K761_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 7.150e-13
Identity = 61/124 (49.19%), Postives = 75/124 (60.48%), Query Frame = 1 
Query:  109 ISDHNDGGGVPSGSAQGDEQQSAE-MASLRADVGSLTGQVSQLTALVTGLLD-SRQEEPAGTEESAADRSNAMESAEAGPANSEEGASSQVGTTQGETDLREPDREPGPSGRHSGEAAVLNPLE 474
            +S   DGG   S SA  D ++  E + +LR  V SLT Q+SQL +LV   +  S++EEPAGT E AADR +A ESA A   N+E GA    G+ Q    LREP RE GPSGRH+GEA    P E
Sbjct:    1 MSGRKDGGDSSSDSAAEDRKRPREELVALRTQVCSLTDQMSQLMSLVEDTMKASKKEEPAGTMEGAADRGDARESAAAESTNAEGGAP-WTGSAQDGRYLREPIREYGPSGRHTGEAGGFVPQE 123
[Close]
BLAST of mRNA_P-fluviatile_contig96.15500.1 vs. uniprot
Match: A0A6H5K3C5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3C5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 8.470e-13
Identity = 61/122 (50.00%), Postives = 75/122 (61.48%), Query Frame = 1 
Query:  109 ISDHNDGGGVPSGSAQGDEQQSAE-MASLRADVGSLTGQVSQLTALVTGLLD-SRQEEPAGTEESAADRSNAMESAEAGPANSEEGASSQVGTTQGETDLREPDREPGPSGRHSGEAAVLNP 468
            +S   DG    S SA  D ++S E + +LR  V SLT Q+SQL +LV   +  S++EEPAGT E AAD  +A ESA A   N+E GA    G+ Q    LREP RE GPSGRHSGEA  L+P
Sbjct:    1 MSGRKDGDDSSSDSAAEDRKRSREELVTLRTQVSSLTDQMSQLMSLVEDAMKASKKEEPAGTMEGAADCGDARESAAAESTNAEGGAP-WTGSAQDGRYLREPIRESGPSGRHSGEAGALSP 121
[Close]
BLAST of mRNA_P-fluviatile_contig96.15500.1 vs. uniprot
Match: A0A6H5KG71_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG71_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.550e-12
Identity = 61/124 (49.19%), Postives = 75/124 (60.48%), Query Frame = 1 
Query:  109 ISDHNDGGGVPSGSAQGDEQQSAE-MASLRADVGSLTGQVSQLTALVTGLLD-SRQEEPAGTEESAADRSNAMESAEAGPANSEEGASSQVGTTQGETDLREPDREPGPSGRHSGEAAVLNPLE 474
            +S   DGG   S SA  + ++S E + +LR    SLT Q+SQL +LV   +  S++EEPAGT E AADR +A ESA A   N+E GA    G+ Q    LREP RE GPSGRHSGEA    P E
Sbjct:    1 MSGRKDGGDPSSDSAADNRKRSREELVALRTQDSSLTDQMSQLMSLVEDTMKASKEEEPAGTMEGAADRGDAWESAAAESTNAEGGAP-WTGSVQDGRYLREPVRESGPSGRHSGEAGGFVPQE 123
[Close]
BLAST of mRNA_P-fluviatile_contig96.15500.1 vs. uniprot
Match: A0A6H5L8M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8M7_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 1.630e-12
Identity = 61/124 (49.19%), Postives = 72/124 (58.06%), Query Frame = 1 
Query:  109 ISDHNDGGGVPSGSAQGDEQQSAE-MASLRADVGSLTGQVSQLTALVTGLLD-SRQEEPAGTEESAADRSNAMESAEAGPANSEEGASSQVGTTQGETDLREPDREPGPSGRHSGEAAVLNPLE 474
            +S   DGG   S SA  D ++S E + +LR  V SLT Q  QL +LV   +  S +EEPAGT E AAD  +A ESA A   N+E GA    G+ Q    LREP RE GPSGRHSGEA    P E
Sbjct:    1 MSGSKDGGDSSSDSAAEDRKRSREELVALRTQVNSLTDQTGQLMSLVEDTMKTSNKEEPAGTMEGAADLGDARESAAAESTNAEVGAP-WTGSAQDGRYLREPVRECGPSGRHSGEAGGFVPQE 123
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig96.15500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUM2_9PHAE2.260e-1450.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNY4_9PHAE3.510e-1450.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG88_9PHAE1.000e-1350.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LCX0_9PHAE1.910e-1349.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU0_9PHAE4.080e-1350.00CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K0G8_9PHAE6.390e-1350.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K761_9PHAE7.150e-1349.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3C5_9PHAE8.470e-1350.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KG71_9PHAE1.550e-1249.19CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L8M7_9PHAE1.630e-1249.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig96contigP-fluviatile_contig96:4051..4524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_009000.1
Hectar predicted targeting categoryother localisation
Exons1
Model size474
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817361.1658413-CDS-P-fluviatile_contig96:4050..45241622817361.1658413-CDS-P-fluviatile_contig96:4050..4524Porterinema fluviatile SAG_2381CDSP-fluviatile_contig96 4051..4524 +
1693572242.680092-CDS-P-fluviatile_contig96:4050..45241693572242.680092-CDS-P-fluviatile_contig96:4050..4524Porterinema fluviatile SAG_2381CDSP-fluviatile_contig96 4051..4524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig96.15500.1prot_P-fluviatile_contig96.15500.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig96 4051..4524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig96.15500.1

>prot_P-fluviatile_contig96.15500.1 ID=prot_P-fluviatile_contig96.15500.1|Name=mRNA_P-fluviatile_contig96.15500.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=158bp
HIPLACLIKEITQVFPFQVKDIHQYTSVVPRGSPFGISDHNDGGGVPSGS
AQGDEQQSAEMASLRADVGSLTGQVSQLTALVTGLLDSRQEEPAGTEESA
ADRSNAMESAEAGPANSEEGASSQVGTTQGETDLREPDREPGPSGRHSGE
AAVLNPLE
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mRNA from alignment at P-fluviatile_contig96:4051..4524+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig96.15500.1 ID=mRNA_P-fluviatile_contig96.15500.1|Name=mRNA_P-fluviatile_contig96.15500.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=474bp|location=Sequence derived from alignment at P-fluviatile_contig96:4051..4524+ (Porterinema fluviatile SAG_2381)
CACATTCCTCTTGCGTGTCTAATAAAAGAGATTACACAAGTCTTCCCCTT
CCAAGTAAAGGACATACACCAATACACTAGTGTGGTCCCTCGAGGGAGTC
CATTCGGAATCTCAGACCACAATGACGGGGGCGGTGTCCCCAGTGGTTCT
GCGCAGGGAGACGAACAGCAGTCGGCAGAAATGGCGAGTTTACGCGCGGA
TGTAGGTTCGCTGACAGGCCAGGTCAGCCAGCTGACTGCGCTGGTAACAG
GATTGCTAGATAGCAGGCAGGAGGAGCCAGCCGGCACCGAGGAGAGTGCC
GCTGACCGCAGCAACGCCATGGAGAGTGCTGAGGCGGGACCTGCAAACTC
CGAAGAAGGGGCGTCGTCGCAGGTGGGAACTACGCAGGGCGAGACGGACC
TGCGCGAACCAGATCGAGAGCCTGGTCCATCCGGACGGCACAGCGGCGAA
GCGGCGGTCTTAAACCCCCTCGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig96:4051..4524+

>mRNA_P-fluviatile_contig96.15500.1 ID=mRNA_P-fluviatile_contig96.15500.1|Name=mRNA_P-fluviatile_contig96.15500.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=948bp|location=Sequence derived from alignment at P-fluviatile_contig96:4051..4524+ (Porterinema fluviatile SAG_2381)
CACATTCCTCTTGCGTGTCTAATAAAAGAGATTACACAAGTCTTCCCCTT
CCAAGTAAAGGACATACACCAATACACTAGTGTGGTCCCTCGAGGGAGTC
CATTCGGAATCTCAGACCACAATGACGGGGGCGGTGTCCCCAGTGGTTCT
GCGCAGGGAGACGAACAGCAGTCGGCAGAAATGGCGAGTTTACGCGCGGA
TGTAGGTTCGCTGACAGGCCAGGTCAGCCAGCTGACTGCGCTGGTAACAG
GATTGCTAGATAGCAGGCAGGAGGAGCCAGCCGGCACCGAGGAGAGTGCC
GCTGACCGCAGCAACGCCATGGAGAGTGCTGAGGCGGGACCTGCAAACTC
CGAAGAAGGGGCGTCGTCGCAGGTGGGAACTACGCAGGGCGAGACGGACC
TGCGCGAACCAGATCGAGAGCCTGGTCCATCCGGACGGCACAGCGGCGAA
GCGGCGGTCTTAAACCCCCTCGAGCACATTCCTCTTGCGTGTCTAATAAA
AGAGATTACACAAGTCTTCCCCTTCCAAGTAAAGGACATACACCAATACA
CTAGTGTGGTCCCTCGAGGGAGTCCATTCGGAATCTCAGACCACAATGAC
GGGGGCGGTGTCCCCAGTGGTTCTGCGCAGGGAGACGAACAGCAGTCGGC
AGAAATGGCGAGTTTACGCGCGGATGTAGGTTCGCTGACAGGCCAGGTCA
GCCAGCTGACTGCGCTGGTAACAGGATTGCTAGATAGCAGGCAGGAGGAG
CCAGCCGGCACCGAGGAGAGTGCCGCTGACCGCAGCAACGCCATGGAGAG
TGCTGAGGCGGGACCTGCAAACTCCGAAGAAGGGGCGTCGTCGCAGGTGG
GAACTACGCAGGGCGAGACGGACCTGCGCGAACCAGATCGAGAGCCTGGT
CCATCCGGACGGCACAGCGGCGAAGCGGCGGTCTTAAACCCCCTCGAG
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