mRNA_P-fluviatile_contig90.15428.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig90.15428.1
Unique NamemRNA_P-fluviatile_contig90.15428.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig90.15428.1 vs. uniprot
Match: A0A1E7F0G0_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F0G0_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.300e-18
Identity = 37/52 (71.15%), Postives = 43/52 (82.69%), Query Frame = 2 
Query:    2 GVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 157
            G++RHSDKHA   IP+AQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:    3 GIHRHSDKHATGKIPKAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 54
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BLAST of mRNA_P-fluviatile_contig90.15428.1 vs. uniprot
Match: A0A524MI88_9PROT (Uncharacterized protein n=1 Tax=Nitrosomonadales bacterium TaxID=2026761 RepID=A0A524MI88_9PROT)

HSP 1 Score: 79.3 bits (194), Expect = 1.000e-17
Identity = 37/52 (71.15%), Postives = 42/52 (80.77%), Query Frame = 2 
Query:    2 GVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDIRR 157
            GV+ HS +HA  HIPEAQ AFK+LMIH +LQ A RIAFRCVLHRCG+ DI R
Sbjct:   68 GVHEHSTRHATGHIPEAQCAFKILMIHEVLQFALRIAFRCVLHRCGNLDIHR 119
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BLAST of mRNA_P-fluviatile_contig90.15428.1 vs. uniprot
Match: B8CEF4_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CEF4_THAPS)

HSP 1 Score: 76.6 bits (187), Expect = 4.060e-17
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 2 
Query:    2 GVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 151
            GV+ HSDKHA  H P+AQ AFK LMIH +LQ A RIAFRCVLHRCG QDI
Sbjct:   28 GVSGHSDKHALGHYPKAQCAFKSLMIHEVLQFALRIAFRCVLHRCGIQDI 77
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BLAST of mRNA_P-fluviatile_contig90.15428.1 vs. uniprot
Match: K0S3C5_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S3C5_THAOC)

HSP 1 Score: 71.2 bits (173), Expect = 4.610e-15
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 2 
Query:    2 GVNRHSDKHAPRHIPEAQDAFKVLMIHWILQVARRIAFRCVLHRCGSQDI 151
            GV  HSDKHA  + P+AQ AFK+LMIH +LQ   RIA RCVLHRCG QDI
Sbjct:   21 GVQGHSDKHALGNYPKAQCAFKILMIHEVLQFVLRIAVRCVLHRCGIQDI 70
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BLAST of mRNA_P-fluviatile_contig90.15428.1 vs. uniprot
Match: K5UIC4_PHACS (Uncharacterized protein n=1 Tax=Phanerochaete carnosa (strain HHB-10118-sp) TaxID=650164 RepID=K5UIC4_PHACS)

HSP 1 Score: 64.7 bits (156), Expect = 1.360e-12
Identity = 33/44 (75.00%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:   43 PGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVLQR 174
            PGSARCVQ FDDSL+SA   TYRISLRSSS+ EPR P LKV+ R
Sbjct:    6 PGSARCVQRFDDSLNSAIHITYRISLRSSSMREPRDPLLKVVYR 49
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BLAST of mRNA_P-fluviatile_contig90.15428.1 vs. uniprot
Match: R1EX34_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX34_EMIHU)

HSP 1 Score: 65.5 bits (158), Expect = 3.470e-12
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   16 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 168
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
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BLAST of mRNA_P-fluviatile_contig90.15428.1 vs. uniprot
Match: R1ESX1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ESX1_EMIHU)

HSP 1 Score: 65.5 bits (158), Expect = 3.550e-12
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   16 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 168
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
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BLAST of mRNA_P-fluviatile_contig90.15428.1 vs. uniprot
Match: A0A0E9NCQ7_SAICN (Uncharacterized protein n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NCQ7_SAICN)

HSP 1 Score: 67.4 bits (163), Expect = 4.630e-12
Identity = 33/42 (78.57%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:   43 PGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 168
            PGSA CVQ FDDSL+SA   TYRISLRSSS+WEPR P LKVL
Sbjct:  127 PGSAMCVQRFDDSLNSAIHITYRISLRSSSMWEPRDPLLKVL 168
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BLAST of mRNA_P-fluviatile_contig90.15428.1 vs. uniprot
Match: R1D6I6_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D6I6_EMIHU)

HSP 1 Score: 65.5 bits (158), Expect = 4.830e-12
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   16 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 168
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
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BLAST of mRNA_P-fluviatile_contig90.15428.1 vs. uniprot
Match: R1D5C4_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D5C4_EMIHU)

HSP 1 Score: 65.5 bits (158), Expect = 4.830e-12
Identity = 34/51 (66.67%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   16 LRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRHPSLKVL 168
            L + C +A PG A CVQ FDDSL+SA R TYRISLRSSSL EPR+PS  V+
Sbjct:    5 LEETCVRAEPGCAICVQRFDDSLNSAIRTTYRISLRSSSLREPRYPSAGVV 55
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig90.15428.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1E7F0G0_9STRA1.300e-1871.15Uncharacterized protein (Fragment) n=2 Tax=Fragila... [more]
A0A524MI88_9PROT1.000e-1771.15Uncharacterized protein n=1 Tax=Nitrosomonadales b... [more]
B8CEF4_THAPS4.060e-1774.00Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0S3C5_THAOC4.610e-1568.00Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K5UIC4_PHACS1.360e-1275.00Uncharacterized protein n=1 Tax=Phanerochaete carn... [more]
R1EX34_EMIHU3.470e-1266.67Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1ESX1_EMIHU3.550e-1266.67Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A0E9NCQ7_SAICN4.630e-1278.57Uncharacterized protein n=1 Tax=Saitoella complica... [more]
R1D6I6_EMIHU4.830e-1266.67Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
R1D5C4_EMIHU4.830e-1266.67Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig90contigP-fluviatile_contig90:61042..61218 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score66.6
Seed ortholog evalue4.4e-09
Seed eggNOG ortholog5217.XP_007006354.1
EggNOG OGs2E6PU@1,2SDCQ@2759,3ABW1@33154,3Q3AX@4751,3VC7G@5204
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size179
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622817356.3551462-CDS-P-fluviatile_contig90:61041..612181622817356.3551462-CDS-P-fluviatile_contig90:61041..61218Porterinema fluviatile SAG_2381CDSP-fluviatile_contig90 61042..61218 -
1693572207.6829696-CDS-P-fluviatile_contig90:61041..612181693572207.6829696-CDS-P-fluviatile_contig90:61041..61218Porterinema fluviatile SAG_2381CDSP-fluviatile_contig90 61042..61218 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig90.15428.1prot_P-fluviatile_contig90.15428.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig90 61042..61218 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig90.15428.1

>prot_P-fluviatile_contig90.15428.1 ID=prot_P-fluviatile_contig90.15428.1|Name=mRNA_P-fluviatile_contig90.15428.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=59bp
WCQQTLRQACSQAYPGSARCVQSFDDSLDSASRKTYRISLRSSSLWEPRH
PSLKVLQR*
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mRNA from alignment at P-fluviatile_contig90:61042..61218-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig90.15428.1 ID=mRNA_P-fluviatile_contig90.15428.1|Name=mRNA_P-fluviatile_contig90.15428.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=177bp|location=Sequence derived from alignment at P-fluviatile_contig90:61042..61218- (Porterinema fluviatile SAG_2381)
TGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGCATATCCCGGAAG
CGCAAGATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCGCA
AGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGACAT
CCGTCGCTGAAAGTTTTACAACGTTAA
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Coding sequence (CDS) from alignment at P-fluviatile_contig90:61042..61218-

>mRNA_P-fluviatile_contig90.15428.1 ID=mRNA_P-fluviatile_contig90.15428.1|Name=mRNA_P-fluviatile_contig90.15428.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=354bp|location=Sequence derived from alignment at P-fluviatile_contig90:61042..61218- (Porterinema fluviatile SAG_2381)
TGGTGTCAACAGACACTCCGACAAGCATGCTCCCAGGCATATCCCGGAAG
CGCAAGATGCGTTCAAAGTTTTGATGATTCACTGGATTCTGCAAGTCGCA
AGACGTATCGCATTTCGCTGCGTTCTTCATCGTTGTGGGAGCCAAGACAT
CCGTCGCTGAAAGTTTTACAACGTTAATGGTGTCAACAGACACTCCGACA
AGCATGCTCCCAGGCATATCCCGGAAGCGCAAGATGCGTTCAAAGTTTTG
ATGATTCACTGGATTCTGCAAGTCGCAAGACGTATCGCATTTCGCTGCGT
TCTTCATCGTTGTGGGAGCCAAGACATCCGTCGCTGAAAGTTTTACAACG
TTAA
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